Rh5BG561800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000990
Physical Location & Seq
Reverse (-)
89083312 .. 89084232
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG561800.1

Sequence Viewer

Length: 921 bp
ATGGATGTTGACCCATCATCGATCTGTATTTCTCCACCTGGGTTACATTCTGTTGATGAAGTTGTGTCTAGCCATGTCCTCTCACGAAGCAGACAGAGGCCCTTGTTTAGCACAGAAACTGAAGATTTGCTTTCCGCAGATGATCCTATCACTAATTCAAGTGAATATGAGGATGATATGTTAGATGAAAATTGTGAAAAAAATGTGGTGAGTACGGATCCACTCTCCCTTCACATCCCTTGTTCAACAATGGAGTTTGTGGAGCAATGCACAGTACGCCATTCTAGTGATCTCCACAGCCATGAAGTCAATCCCGCCATTGTTTCAAAAGTACATAATGACATTACAGTATATAATAATACCTCCCCATCTTCATCTGTGCCCGTTGAACCACAAGCTTCAGGTGTCATAGAAAATGAGAGCATGGAAATTGGAAGTGTGGACGGAGTGGTCTTTGTGGAGCATTGCGCATCAACCAATCCTAATGGTAACCACAGCCATGATATCGATACTGCGCCTACTGTTATTTCCAAAAGATCCCCTGACAATACTGTTTATAACAAGACCTCTGCATCTGCATCTATGCCTGTTGAATCAGAAATGGTTGTAGTGGCCGAAACTTCAGGTATCATTTTAGAAAATGATAGAATGGAAATTGGAAGTGAGAATGGAAGCACAATCTGTGCTGATAATCCTTCCACCTTGGACGGCGTTCGTGGTTGTATGATAAATGGTTCAGATTGTAGTCAGGATTCAGAATCAGTTGGCAGTGCGATGGTTGTGTACTCAGAACCATTGCTCAAGTTCTCATCAACATCAAGTTGCAACAAGGAAGAGCTGCCTGTTGAGAATGGGGTTACTGAAACTCTTCAATCACTGAATCTCATCTTAAAAAGTGTAAACTTCAAGAGGGTGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

32.89

Weight (kDa)

4.35

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AasI GACNNNNNNGTC 1 cut(s) 449
Acc16I TGCGCA 1 cut(s) 469
AccB1I GGYRCC 1 cut(s) 913
AciI CCGC 2 cut(s) 135, 315
AclWI GGATC 4 cut(s) 137, 212, 225, 531
AcoI YGGCCR 1 cut(s) 612
AcuI CTGAAG 3 cut(s) 141, 384, 606
AfaI GTAC 4 cut(s) 214, 276, 333, 785
AgsI TTSAA 7 cut(s) 159, 246, 327, 389, 593, 872, 907
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 398, 838
AluI AGCT 2 cut(s) 398, 838
AlwI GGATC 4 cut(s) 137, 212, 225, 531
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 2 cut(s) 98, 612
ApeKI GCWGC 1 cut(s) 838
Asp700I GAANNNNTTC 1 cut(s) 867
AspLEI GCGC 2 cut(s) 470, 517
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 384
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 913
BbvI GCAGC 1 cut(s) 825
BccI CCATC 3 cut(s) 22, 376, 769
BceAI ACGGC 2 cut(s) 724, 901
BciT130I CCWGG 1 cut(s) 39
BfaI CTAG 2 cut(s) 69, 285
BisI GCNGC 1 cut(s) 839
BlsI GCNGC 1 cut(s) 840
Bme1390I CCNGG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 2 cut(s) 219, 915
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 3 cut(s) 479, 581, 587
BpuEI CTTGAG 1 cut(s) 785
Bsa29I ATCGAT 2 cut(s) 20, 507
BsaJI CCNNGG 2 cut(s) 38, 702
Bse3DI GCAATG 3 cut(s) 272, 463, 794
BseBI CCWGG 1 cut(s) 39
BseCI ATCGAT 2 cut(s) 20, 507
BseDI CCNNGG 2 cut(s) 38, 702
BseGI GGATG 3 cut(s) 10, 178, 234
BseMI GCAATG 3 cut(s) 272, 463, 794
BseMII CTCAG 1 cut(s) 801
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 1 cut(s) 825
BshFI GGCC 2 cut(s) 100, 614
BshNI GGYRCC 1 cut(s) 913
BshVI ATCGAT 2 cut(s) 20, 507
BsnI GGCC 2 cut(s) 100, 614
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 5 cut(s) 21, 142, 217, 289, 536
BspACI CCGC 2 cut(s) 135, 315
BspANI GGCC 2 cut(s) 100, 614
BspCNI CTCAG 1 cut(s) 800
BspDI ATCGAT 2 cut(s) 20, 507
BspLI GGNNCC 2 cut(s) 219, 915
BspPI GGATC 4 cut(s) 137, 212, 225, 531
BspQI GCTCTTC 1 cut(s) 828
BspT107I GGYRCC 1 cut(s) 913
BsrDI GCAATG 3 cut(s) 272, 463, 794
BssECI CCNNGG 2 cut(s) 38, 702
BssMI GATC 5 cut(s) 21, 142, 217, 289, 536
BssT1I CCWWGG 1 cut(s) 702
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 4 cut(s) 274, 349, 523, 553
Bst6I CTCTTC 2 cut(s) 828, 873
BstDEI CTNAG 1 cut(s) 787
BstEII GGTNACC 1 cut(s) 488
BstF5I GGATG 3 cut(s) 10, 178, 234
BstHHI GCGC 2 cut(s) 470, 517
BstKTI GATC 5 cut(s) 24, 145, 220, 292, 539
BstMBI GATC 5 cut(s) 21, 142, 217, 289, 536
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstNI CCWGG 1 cut(s) 39
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 825
BstX2I RGATCY 2 cut(s) 217, 536
BstYI RGATCY 2 cut(s) 217, 536
Bsu15I ATCGAT 2 cut(s) 20, 507
BsuRI GGCC 2 cut(s) 100, 614
BsuTUI ATCGAT 2 cut(s) 20, 507
BtgZI GCGATG 1 cut(s) 788
BtsCI GGATG 3 cut(s) 10, 178, 234
BtsI GCAGTG 1 cut(s) 775
BtsIMutI CAGTG 2 cut(s) 775, 875
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 2 cut(s) 470, 517
Cfr13I GGNCC 1 cut(s) 99
ClaI ATCGAT 2 cut(s) 20, 507
Csp6I GTAC 4 cut(s) 213, 275, 332, 784
CviAII CATG 4 cut(s) 74, 302, 424, 500
CviJI RGCY 7 cut(s) 72, 100, 300, 398, 498, 614, 838
CviKI_1 RGCY 7 cut(s) 72, 100, 300, 398, 498, 614, 838
CviQI GTAC 4 cut(s) 213, 275, 332, 784
DdeI CTNAG 1 cut(s) 787
DpnI GATC 5 cut(s) 23, 144, 219, 291, 538
DpnII GATC 5 cut(s) 21, 142, 217, 289, 536
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 828, 873
EarI CTCTTC 2 cut(s) 828, 873
Eco130I CCWWGG 1 cut(s) 702
Eco32I GATATC 1 cut(s) 505
Eco57I CTGAAG 3 cut(s) 141, 384, 606
Eco91I GGTNACC 1 cut(s) 488
EcoO109I RGGNCCY 1 cut(s) 99
EcoO65I GGTNACC 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 37
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 702
ErhI CCWWGG 1 cut(s) 702
FaeI CATG 4 cut(s) 77, 305, 427, 503
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 4 cut(s) 73, 301, 423, 499
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 839
FokI GGATG 3 cut(s) 17, 185, 221
Fsp4HI GCNGC 1 cut(s) 839
FspBI CTAG 2 cut(s) 69, 285
FspI TGCGCA 1 cut(s) 469
GlaI GCGC 2 cut(s) 469, 516
GluI GCNGC 1 cut(s) 839
HaeIII GGCC 2 cut(s) 100, 614
HhaI GCGC 2 cut(s) 470, 517
Hin1II CATG 4 cut(s) 77, 305, 427, 503
Hin6I GCGC 2 cut(s) 468, 515
HinP1I GCGC 2 cut(s) 468, 515
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 4 cut(s) 593, 752, 758, 880
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 4 cut(s) 10, 442, 784, 901
Hpy188I TCNGA 4 cut(s) 598, 739, 757, 790
Hpy188III TCNNGA 3 cut(s) 84, 749, 907
Hpy8I GTNNAC 4 cut(s) 10, 442, 784, 901
HpyAV CCTTC 2 cut(s) 239, 705
HpyCH4III ACNGT 4 cut(s) 274, 349, 523, 553
HpyCH4V TGCA 4 cut(s) 270, 572, 578, 825
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 1 cut(s) 787
Hsp92II CATG 4 cut(s) 77, 305, 427, 503
HspAI GCGC 2 cut(s) 468, 515
Kzo9I GATC 5 cut(s) 21, 142, 217, 289, 536
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 2 cut(s) 262, 460
LpnPI CCDG 8 cut(s) 24, 51, 387, 555, 600, 609, 734, 855
Lsp1109I GCAGC 1 cut(s) 825
LweI GCATC 3 cut(s) 479, 581, 587
MaeI CTAG 2 cut(s) 69, 285
MaeIII GTNAC 3 cut(s) 42, 488, 856
MalI GATC 5 cut(s) 23, 144, 219, 291, 538
MboI GATC 5 cut(s) 21, 142, 217, 289, 536
MboII GAAGA 4 cut(s) 134, 363, 845, 860
MflI RGATCY 2 cut(s) 217, 536
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 4 cut(s) 154, 190, 429, 654
MnlI CCTC 6 cut(s) 89, 90, 163, 373, 577, 903
MroXI GAANNNNTTC 1 cut(s) 867
MseI TTAA 1 cut(s) 890
MslI CAYNNNNRTG 3 cut(s) 285, 300, 498
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 276
NdeII GATC 5 cut(s) 21, 142, 217, 289, 536
NlaIII CATG 4 cut(s) 77, 305, 427, 503
NlaIV GGNNCC 2 cut(s) 219, 915
NsbI TGCGCA 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 828
PdmI GAANNNNTTC 1 cut(s) 867
PfeI GAWTC 4 cut(s) 593, 752, 758, 880
PkrI GCNGC 1 cut(s) 840
PsiI TTATAA 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 37
PspEI GGTNACC 1 cut(s) 488
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 219, 915
PspPI GGNCC 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 2 cut(s) 217, 536
RsaI GTAC 4 cut(s) 214, 276, 333, 785
RsaNI GTAC 4 cut(s) 213, 275, 332, 784
RseI CAYNNNNRTG 3 cut(s) 285, 300, 498
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 1 cut(s) 890
SatI GCNGC 1 cut(s) 839
Sau3AI GATC 5 cut(s) 21, 142, 217, 289, 536
Sau96I GGNCC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 384
SetI ASST 8 cut(s) 40, 365, 400, 406, 569, 628, 704, 840
SfaNI GCATC 3 cut(s) 479, 581, 587
SmiMI CAYNNNNRTG 3 cut(s) 285, 300, 498
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 4 cut(s) 154, 190, 429, 654
SsiI CCGC 2 cut(s) 135, 315
SspMI CTAG 2 cut(s) 69, 285
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 702
TaaI ACNGT 4 cut(s) 274, 349, 523, 553
TaqI TCGA 2 cut(s) 20, 507
TasI AATT 4 cut(s) 154, 190, 429, 654
TatI WGTACW 2 cut(s) 331, 783
TfiI GAWTC 4 cut(s) 593, 752, 758, 880
Tru1I TTAA 1 cut(s) 890
Tru9I TTAA 1 cut(s) 890
TscAI CASTG 2 cut(s) 775, 882
TseI GCWGC 1 cut(s) 838
TspDTI ATGAA 4 cut(s) 72, 201, 318, 363
TspGWI ACGGA 2 cut(s) 230, 459
TspRI CASTG 2 cut(s) 775, 882
XmnI GAANNNNTTC 1 cut(s) 867
XspI CTAG 2 cut(s) 69, 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.