Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000990

Physical Location & Seq

Genomic Coordinates Reverse (-)

6697760 .. 6698339

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g10240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTACAACTTCTGGGCTAGTTGGAGAATCATGAAGGGCCATGAACACAAGTTGGCAAGACTGGAGGACATTCTTAACCTCCCGGTACAAGATCCTCGGCGTGCAGAGTTTTCTGCAGCTCATATCAAATGGGTGAAAGTAGAAGGCGGTCGCCAAGGTGGTGATGGTATCGCCCTGATCCCATTTGCTAGAGTGGGTGATTTTGTAAAGGGAGAATCTTCAAGTGCTGAATGCCTGCTAGCGCTTCCGTGTCGAGTCAAGAAGGAAGATACTCGAGGGGAGTATCAGCAAGCCAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MULE SWIM

Protein Analysis

101

Amino Acids

11.27

Weight (kDa)

9.03

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13970 AT4G13970
fragaria_vesca	FvH4_3g45511 FvH4_3g45511
malus_domestica	MD09G1283600.v1.1 MD15G1114100.v1.1 MD17G1276900.v1.1 MD17G1277000.v1.1
prunus_persica	Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1
pyrus_communis	pycom09g19150 pycom15g10240 pycom17g27460 pycom17g27470
rosa_chinensis	RchiOBHm_Chr5g0069181 RchiOBHm_Chr5g0083411 RchiOBHm_Chr5g0083541 RchiOBHm_Chr5g0083621 RchiOBHm_Chr5g0083661
rosa_laevigata	RLG00000037036 RLG00000037037
rosa_multiflora	Rmu_sc0001444.1_g000006 Rmu_sc0001444.1_g000007 Rmu_sc0002245.1_g000017 Rmu_sc0002245.1_g000026 Rmu_sc0002245.1_g000039 Rmu_sc0006217.1_g000003 Rmu_sc0024012.1_g000001 Rmu_sc0042520.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001100 Rroxscaffold_3G00218200
rosa_rugosa	Rorug05G0484900 Rorug05G0484900 Rorug05G0485000
rosa_samantha	Rh5AG534600 Rh5AG534700 Rh5AG535800 Rh5AG536400 Rh5AG536500 Rh5AG537000 Rh5AG538000 Rh5BG561800 Rh5BG562100 Rh5BG562400 Rh5BG562500 Rh5BG562600 Rh5BG562900 Rh5BG563000 Rh5CG584200 Rh5CG584500 Rh5CG584800 Rh5CG585300 Rh5DG570500 Rh5DG570700 Rh5DG571100 Rh5DG571300
rosa_wichuraiana	Rw5G049860 Rw5G050490 Rw5G050520 Rw5G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	86, 172
AfaI	GTAC	2 cut(s)	5, 87
AfeI	AGCGCT	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	222
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	2 cut(s)	86, 172
Ama87I	CYCGRG	1 cut(s)	273
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	3 cut(s)	145, 173, 209
AsuNHI	GCTAGC	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	83
BfaI	CTAG	3 cut(s)	18, 189, 239
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	83
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	83
BmtI	GCTAGC	1 cut(s)	242
BpmI	CTGGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	95, 154, 294
Bse1I	ACTGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	95, 154, 294
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	273
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	91, 177
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	86, 172
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	95, 154, 294
BssMI	GATC	2 cut(s)	91, 177
BssT1I	CCWWGG	2 cut(s)	154, 294
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	4 cut(s)	102, 236, 240, 291
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	94, 180
BstMBI	GATC	2 cut(s)	91, 177
BstMCI	CGRYCG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	128
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	39
Cac8I	GCNNGC	4 cut(s)	102, 236, 240, 291
CciI	TCATGA	1 cut(s)	30
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	4, 86
CviAII	CATG	2 cut(s)	31, 41
CviJI	RGCY	4 cut(s)	17, 39, 119, 293
CviKI_1	RGCY	4 cut(s)	17, 39, 119, 293
CviQI	GTAC	2 cut(s)	4, 86
DpnI	GATC	2 cut(s)	93, 179
DpnII	GATC	2 cut(s)	91, 177
Eco130I	CCWWGG	2 cut(s)	154, 294
Eco47III	AGCGCT	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	154, 294
ErhI	CCWWGG	2 cut(s)	154, 294
FaeI	CATG	2 cut(s)	34, 44
FaiI	YATR	3 cut(s)	32, 42, 123
FatI	CATG	2 cut(s)	30, 40
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	3 cut(s)	18, 189, 239
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	83
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	34, 44
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	3 cut(s)	27, 215, 255
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	3 cut(s)	145, 173, 209
Hpy188III	TCNNGA	2 cut(s)	31, 259
HpyAV	CCTTC	3 cut(s)	28, 137, 256
HpyCH4V	TGCA	2 cut(s)	104, 116
Hsp92II	CATG	2 cut(s)	34, 44
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	2 cut(s)	91, 177
LpnPI	CCDG	4 cut(s)	47, 96, 188, 248
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	3 cut(s)	18, 189, 239
MalI	GATC	2 cut(s)	93, 179
MboI	GATC	2 cut(s)	91, 177
MboII	GAAGA	2 cut(s)	210, 278
MflI	RGATCY	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	4 cut(s)	58, 89, 105, 269
MseI	TTAA	1 cut(s)	75
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	91, 177
NheI	GCTAGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	34, 44
NmeAIII	GCCGAG	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	273
PagI	TCATGA	1 cut(s)	30
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	27, 215
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	2 cut(s)	5, 87
RsaNI	GTAC	2 cut(s)	4, 86
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	91, 177
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	3 cut(s)	81, 121, 160
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	3 cut(s)	18, 189, 239
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	154, 294
TaqI	TCGA	2 cut(s)	253, 274
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	27, 215
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	47, 57
TspGWI	ACGGA	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XhoI	CTCGAG	1 cut(s)	273
XspI	CTAG	3 cut(s)	18, 189, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.