Rh5DG570700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000990
Physical Location & Seq
Reverse (-)
87690573 .. 87690848
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG570700.1

Sequence Viewer

Length: 276 bp
ATGGCTAGATGGGATGAGATTCTGTCTCTTCCTGTACAGAATCCTCCGACCTTGGAGTTTTCTGCTGCTGATCTTGTGTGGTCGAAGGTGGAAGGTTGGCGTGACAAGAAAGATAGAGTTGCTGTAATCCCCTATGCCAGAGTTGATGCTTTTGTGAGGGGTGAATCTTTGAACAAAGAGTGTCCGACAAGATTTCATGTTGAAGCGAGGCGACGGCGGCAGGCAAAGACTAATTGCAAACCAAAGGTTGATGGCATCCTTGAATATATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.58

Weight (kDa)

9.34

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 217
AfaI GTAC 1 cut(s) 36
AgsI TTSAA 3 cut(s) 172, 203, 263
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 173
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 3, 245
BceAI ACGGC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 66, 218
BlsI GCNGC 2 cut(s) 67, 219
BmsI GCATC 2 cut(s) 136, 264
BsaJI CCNNGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 19, 255
BseXI GCAGC 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 30
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 222
BstF5I GGATG 2 cut(s) 19, 255
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 52
BtsCI GGATG 2 cut(s) 19, 255
Cac8I GCNNGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 197
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 1 cut(s) 35
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 135, 198, 267
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 66, 218
FokI GGATG 2 cut(s) 26, 242
Fsp4HI GCNGC 2 cut(s) 66, 218
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 66, 218
Hin1II CATG 1 cut(s) 200
HinfI GANTC 3 cut(s) 19, 40, 164
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 48, 186
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 2 cut(s) 79, 86
HpyCH4V TGCA 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 45, 151, 206
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 2 cut(s) 136, 264
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 1 cut(s) 20
MluCI AATT 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 71, 209
MnlI CCTC 3 cut(s) 54, 150, 201
MroXI GAANNNNTTC 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 1 cut(s) 70
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 3 cut(s) 19, 40, 164
PkrI GCNGC 2 cut(s) 67, 219
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SatI GCNGC 2 cut(s) 66, 218
Sau3AI GATC 1 cut(s) 70
SetI ASST 4 cut(s) 53, 90, 97, 249
SfaNI GCATC 2 cut(s) 136, 264
Sse9I AATT 1 cut(s) 232
SsiI CCGC 1 cut(s) 217
SspMI CTAG 1 cut(s) 6
StyI CCWWGG 1 cut(s) 51
TaqI TCGA 1 cut(s) 83
TasI AATT 1 cut(s) 232
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 3 cut(s) 19, 40, 164
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.