MD17G1276900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
33729328 .. 33730492
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1276900.v1.1.491

Sequence Viewer

Length: 507 bp
ATGTTTGCCCCTTGTATCTTTGAGGATCTGCTTCTTTGTGTGCAATCTTTGTTCTATGTGAGGGTCTCTGTGGAGACTATAATGCAGAGACATAATGAATCTGTAGAGAAACAGGGTGGTCCATCTAATTGTGATGACCTTTTAACCCATAGGTTTGTTCGGAGGCAGGAGAGGGTCATTCGATGTTCTATTTATGAATTGGATGCTGATAATGCGATTAGCATTAGCATGTGGGTAGAAAACATCAGTCATGTTTTCTTCTATGAGGATTTCTCTGATGTGGACCCTTTCACTTCGGGCATTCAGACAGAGTGGCAGTTGCAACAGATGATTTGCTTCGGTAATCGCAGCCTTATAGCTTCTGATTCAAGTCTCCTTGTATTTAATGAAGACAACAAGACCATTCCGGTGGCATGGATAGTGGCTCCAAAGTTTGGAAGTTCAAATGCCCATAAATGGATGAGAGCTCTTTACAATAGAGTTCAAACGAAAAACCCTGTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.52

Weight (kDa)

5.32

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AclWI GGATC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 434, 456
AgsI TTSAA 3 cut(s) 369, 444, 485
AluBI AGCT 2 cut(s) 359, 467
AluI AGCT 2 cut(s) 359, 467
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 4 cut(s) 68, 70, 82, 377
AlwI GGATC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 119, 283
AvaII GGWCC 2 cut(s) 119, 283
BanII GRGCYC 1 cut(s) 469
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 1 cut(s) 360
BccI CCATC 1 cut(s) 130
BcoDI GTCTC 4 cut(s) 68, 70, 82, 377
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
Bme18I GGWCC 2 cut(s) 119, 283
BmgT120I GGNCC 2 cut(s) 119, 283
BmiI GGNNCC 2 cut(s) 285, 426
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BsaI GGTCTC 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 406
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 456
BseGI GGATG 2 cut(s) 208, 465
BseLI CCNNNNNNNGG 2 cut(s) 434, 456
BseXI GCAGC 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 1 cut(s) 407
BslI CCNNNNNNNGG 2 cut(s) 434, 456
BsmAI GTCTC 4 cut(s) 68, 70, 82, 377
BsmI GAATGC 1 cut(s) 300
Bso31I GGTCTC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 285, 426
BspPI GGATC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 70
BssMI GATC 1 cut(s) 25
BstF5I GGATG 2 cut(s) 208, 465
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 4 cut(s) 68, 70, 82, 377
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 409
BstYI RGATCY 1 cut(s) 25
BtsCI GGATG 2 cut(s) 208, 465
Cfr13I GGNCC 2 cut(s) 119, 283
CviAII CATG 3 cut(s) 229, 251, 414
CviJI RGCY 4 cut(s) 351, 359, 425, 467
CviKI_1 RGCY 4 cut(s) 351, 359, 425, 467
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 119, 283
Eco53kI GAGCTC 1 cut(s) 467
EcoICRI GAGCTC 1 cut(s) 467
EcoT38I GRGCYC 1 cut(s) 469
FaeI CATG 3 cut(s) 232, 254, 417
FatI CATG 3 cut(s) 228, 250, 413
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 2 cut(s) 215, 472
FriOI GRGCYC 1 cut(s) 469
Fsp4HI GCNGC 1 cut(s) 349
GluI GCNGC 1 cut(s) 349
HapII CCGG 1 cut(s) 407
Hin1II CATG 3 cut(s) 232, 254, 417
HinfI GANTC 2 cut(s) 98, 365
HpaII CCGG 1 cut(s) 407
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 162, 277, 306, 364
Hpy8I GTNNAC 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 43, 85, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
Hsp92II CATG 3 cut(s) 232, 254, 417
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 3 cut(s) 98, 152, 420
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 1 cut(s) 193
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 250, 401
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 2 cut(s) 127, 197
MnlI CCTC 5 cut(s) 16, 54, 156, 165, 259
MseI TTAA 2 cut(s) 143, 384
MslI CAYNNNNRTG 2 cut(s) 227, 407
MspI CCGG 1 cut(s) 407
Mva1269I GAATGC 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 25
NlaIII CATG 3 cut(s) 232, 254, 417
NlaIV GGNNCC 2 cut(s) 285, 426
NspI RCATGY 1 cut(s) 232
PctI GAATGC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 98, 365
PflMI CCANNNNNTGG 1 cut(s) 434
PkrI GCNGC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 285, 426
PspPI GGNCC 2 cut(s) 119, 283
PsuI RGATCY 1 cut(s) 25
RseI CAYNNNNRTG 2 cut(s) 227, 407
SacI GAGCTC 1 cut(s) 469
SaqAI TTAA 2 cut(s) 143, 384
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 2 cut(s) 119, 283
SduI GDGCHC 1 cut(s) 469
SetI ASST 4 cut(s) 141, 155, 361, 469
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 2 cut(s) 119, 283
SmiMI CAYNNNNRTG 2 cut(s) 227, 407
Sse9I AATT 2 cut(s) 127, 197
SstI GAGCTC 1 cut(s) 469
TaqI TCGA 1 cut(s) 181
TasI AATT 2 cut(s) 127, 197
TfiI GAWTC 2 cut(s) 98, 365
Tru1I TTAA 2 cut(s) 143, 384
Tru9I TTAA 2 cut(s) 143, 384
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 3 cut(s) 111, 210, 402
Van91I CCANNNNNTGG 1 cut(s) 434
VpaK11BI GGWCC 2 cut(s) 119, 283
XceI RCATGY 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.