MD15G1114100.v1.1

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000990
Physical Location & Seq
Reverse (-)
8038285 .. 8039692
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1114100.v1.1.491

Sequence Viewer

Length: 276 bp
ATGGAGGACATTCTTAACCTCCCGGTACAAGATACTCGGCATGCAGAGTTTTCCGCAGCTCATATCAAATGGGTGAAAGTAGAAGGCGGTCGCCAAGGTGGTGATGATATCGCCCTGATCCCATTTGCTAGAGTGGGTGATTTTGTAAAAGGAGAATGTTCAAGTGCTGAATGCCCTGCTAGCTTCCGTGTCGAGTCAAGAAGGAAGATACATGAGGGGAGTATCAGCAAGCCAAGGGCCATCAAAATGGAGATGCTCGCATGCATGGGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MULE SWIM

Protein Analysis

92

Amino Acids

10.03

Weight (kDa)

6.82

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 54, 87
AclWI GGATC 1 cut(s) 112
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 1 cut(s) 162
AluBI AGCT 2 cut(s) 59, 183
AluI AGCT 2 cut(s) 59, 183
AlwI GGATC 1 cut(s) 112
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 85, 113, 149
AsuNHI GCTAGC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 68
BccI CCATC 1 cut(s) 248
BcnI CCSGG 1 cut(s) 23
BfaI CTAG 2 cut(s) 129, 180
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 243
BmtI GCTAGC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 94, 233
BseDI CCNNGG 2 cut(s) 94, 233
BseXI GCAGC 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 23
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 239
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 2 cut(s) 54, 87
BspANI GGCC 1 cut(s) 239
BspOI GCTAGC 1 cut(s) 183
BspPI GGATC 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 94, 233
BssMI GATC 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 94, 233
BstC8I GCNNGC 5 cut(s) 42, 181, 230, 258, 262
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNSI RCATGY 2 cut(s) 44, 264
BstSCI CCNGG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 247
BsuRI GGCC 1 cut(s) 239
Cac8I GCNNGC 5 cut(s) 42, 181, 230, 258, 262
Cfr13I GGNCC 1 cut(s) 237
Csp6I GTAC 1 cut(s) 26
CviAII CATG 4 cut(s) 41, 212, 261, 265
CviJI RGCY 5 cut(s) 59, 183, 232, 239, 271
CviKI_1 RGCY 5 cut(s) 59, 183, 232, 239, 271
CviQI GTAC 1 cut(s) 26
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 94, 233
Eco32I GATATC 1 cut(s) 109
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 2 cut(s) 94, 233
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 2 cut(s) 94, 233
FaeI CATG 4 cut(s) 44, 215, 264, 268
FaiI YATR 5 cut(s) 42, 63, 213, 262, 266
FatI CATG 4 cut(s) 40, 211, 260, 264
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 129, 180
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 23
Hin1II CATG 4 cut(s) 44, 215, 264, 268
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 23
HphI GGTGA 3 cut(s) 85, 113, 149
Hpy188III TCNNGA 1 cut(s) 198
HpyAV CCTTC 2 cut(s) 77, 195
HpyCH4V TGCA 2 cut(s) 44, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92II CATG 4 cut(s) 44, 215, 264, 268
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 3 cut(s) 36, 128, 189
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 129, 180
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 1 cut(s) 217
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 2 cut(s) 29, 208
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 180
NciI CCSGG 1 cut(s) 23
NdeII GATC 1 cut(s) 117
NheI GCTAGC 1 cut(s) 179
NlaIII CATG 4 cut(s) 44, 215, 264, 268
NmeAIII GCCGAG 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 266
NspI RCATGY 2 cut(s) 44, 264
PaeI GCATGC 2 cut(s) 44, 264
PctI GAATGC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 237
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 117
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 23
SetI ASST 4 cut(s) 21, 61, 100, 185
SfaNI GCATC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 245
SphI GCATGC 2 cut(s) 44, 264
SsiI CCGC 2 cut(s) 54, 87
SspMI CTAG 2 cut(s) 129, 180
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 2 cut(s) 94, 233
TaqI TCGA 1 cut(s) 192
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 176
XceI RCATGY 2 cut(s) 44, 264
XspI CTAG 2 cut(s) 129, 180
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.