MD17G1277000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000990
Physical Location & Seq
Reverse (-)
33730970 .. 33731440
471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1277000.v1.1.491

Sequence Viewer

Length: 387 bp
ATGTCCCTTCCTGTGCAGAGTCCGCCTGCACTGGAGTTTTCTTCTTCTGATCTTGTGTGGTCAAAGGTAGAAGGTTGGCGGGACAAGAAAGATAGAGTTGCTCTAATTCCGTTCCGTAGAGTTGACGATTTTCTGAGGGGTGAATCCTCTAATAAAGAATGTCCAACAAGATTTTATGTTGAAGCGAGGCAACGATGGCAGCCAAAGACGCCTTACAAACCAAAGGTTGATGGTATTCTTGAGTATATTCTATATTGGTGCTGCTCCTTTGGTCCTGATGACCATAGGAAGGGTGGGCTTGTACGACCCAGCAGGATTAATGTCTCAAAGAAGAAAATGATGGTGGACCGAACACGAAGAGAGGTTGTACCTGCCACTTTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.97

Weight (kDa)

9.75

Isoelectric Point (pI)

63.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
AciI CCGC 2 cut(s) 23, 79
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 2 cut(s) 303, 369
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 328
ApeKI GCWGC 2 cut(s) 199, 261
AseI ATTAAT 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 272, 346
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 2 cut(s) 272, 346
BbvI GCAGC 2 cut(s) 211, 248
BccI CCATC 3 cut(s) 189, 224, 334
BcoDI GTCTC 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 2 cut(s) 200, 262
BlsI GCNGC 2 cut(s) 201, 263
Bme18I GGWCC 2 cut(s) 272, 346
BmgT120I GGNCC 2 cut(s) 272, 346
BpmI CTGGAG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 211, 248
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 2 cut(s) 12, 35
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 2 cut(s) 23, 79
BspCNI CTCAG 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 379
BsrI ACTGG 1 cut(s) 36
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 352
BstACI GRCGYC 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 134
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 3 cut(s) 22, 196, 208
BstV1I GCAGC 2 cut(s) 211, 248
BtsIMutI CAGTG 1 cut(s) 29
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 272, 346
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 302, 368
CviJI RGCY 2 cut(s) 202, 298
CviKI_1 RGCY 2 cut(s) 202, 298
CviQI GTAC 2 cut(s) 302, 368
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
EciI GGCGGA 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 272, 346
FaiI YATR 4 cut(s) 177, 246, 253, 285
FaqI GGGAC 1 cut(s) 95
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 200, 262
Fsp4HI GCNGC 2 cut(s) 200, 262
GluI GCNGC 2 cut(s) 200, 262
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 53
HgaI GACGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 209
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 2 cut(s) 19, 143
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 124, 346
Hpy188I TCNGA 2 cut(s) 49, 135
Hpy188III TCNNGA 2 cut(s) 239, 275
Hpy8I GTNNAC 2 cut(s) 124, 346
HpyAV CCTTC 3 cut(s) 17, 65, 283
HpyCH4V TGCA 2 cut(s) 16, 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 196, 208
HpyF3I CTNAG 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 209
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 6 cut(s) 17, 24, 39, 288, 298, 322
Lsp1109I GCAGC 2 cut(s) 211, 248
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 4 cut(s) 33, 36, 343, 369
MluCI AATT 1 cut(s) 105
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 4 cut(s) 129, 157, 180, 355
MseI TTAA 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 22, 196, 208
NdeII GATC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 201, 263
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 308
PspPI GGNCC 2 cut(s) 272, 346
RsaI GTAC 2 cut(s) 303, 369
RsaNI GTAC 2 cut(s) 302, 368
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 2 cut(s) 200, 262
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 2 cut(s) 272, 346
SchI GAGTC 1 cut(s) 28
SetI ASST 5 cut(s) 69, 76, 228, 366, 373
SinI GGWCC 2 cut(s) 272, 346
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 105
SsiI CCGC 2 cut(s) 23, 79
TaqII GACCGA 1 cut(s) 363
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 199, 261
TspGWI ACGGA 2 cut(s) 99, 104
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 2 cut(s) 272, 346
VspI ATTAAT 1 cut(s) 318
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.