RLG00000037036

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000990
Physical Location & Seq
Reverse (-)
87720208 .. 87721266
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037036

Sequence Viewer

Length: 663 bp
ATGGATGGCATGGACTTTGTGGAGCATTGCGCATTAACCAATCCCAACGGTAACCACAGCCATGATATCGATATTGAGCCTACTGTTATTTCCAAAAGATCTCCGGACAATACTGTTTTTAACAAGATCTCTGCATCTTCATCTATGCCTGTTGAATCAGAAATGGTTGAAGTGGCTGAAACTTCAGGTTTCATTTTAGAAAATGATAGAATGGAAATTGGAAGTGAGAATGGAAGCACAAGTAAGCACAATCTGTTTGCTAATAATCCTTCCACCTTGGACGGCGTTCGTGGTTGTATGATAAATGGTTCAGATTGTAGTCGGGATTCCGAGTCAGTTGGCAATGCGATGGTTGTGTACTCAGAATCATTGCTCAAGTTCTCATCAACATCAAGTTGCAACAAGGAAGAGCTGCCTGTTGAGAATGGGGCTACTGAAACTGGGTCTGGTGAGAAGCCATCTTCAATCACTGAATCTTATCTTAAAAAGTGTAAACTTCAAGAGGGTGCTGAAATCATCAACAACAATGAGGTGATCCACCAGGCAGTTATCAGTGACATCAATGTTACTTCTGTAAAGGGAAATGCTCGAGATATTTCTTGTAATGTTCTTACATGGAGGAAGGAAAACGATAGCCAGGGTAATGGCAATTTTGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

23.69

Weight (kDa)

4.61

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 31
AccIII TCCGGA 1 cut(s) 103
AclWI GGATC 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 1 cut(s) 359
AgsI TTSAA 4 cut(s) 155, 170, 465, 500
AjnI CCWGG 2 cut(s) 540, 636
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
AlwI GGATC 1 cut(s) 529
Ama87I CYCGRG 1 cut(s) 588
Aor13HI TCCGGA 1 cut(s) 103
ApeKI GCWGC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 461, 544
AvaI CYCGRG 1 cut(s) 588
BbvI GCAGC 1 cut(s) 399
BccI CCATC 2 cut(s) 343, 466
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 2 cut(s) 542, 638
BglII AGATCT 2 cut(s) 98, 126
BisI GCNGC 1 cut(s) 413
BlsI GCNGC 1 cut(s) 414
Bme1390I CCNGG 2 cut(s) 542, 638
BmeT110I CYCGRG 1 cut(s) 588
BmrFI CCNGG 2 cut(s) 542, 638
BmrI ACTGGG 1 cut(s) 450
BmsI GCATC 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 359
Bsa29I ATCGAT 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 276, 637
BsaWI WCCGGW 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 445
Bse3DI GCAATG 3 cut(s) 25, 349, 368
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 2 cut(s) 542, 638
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 276, 637
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 3 cut(s) 25, 349, 368
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 445
BseXI GCAGC 1 cut(s) 399
BshVI ATCGAT 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 588
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 98, 126, 534
BspCNI CTCAG 1 cut(s) 374
BspDI ATCGAT 1 cut(s) 69
BspEI TCCGGA 1 cut(s) 103
BspPI GGATC 1 cut(s) 529
BspQI GCTCTTC 1 cut(s) 402
BsrDI GCAATG 3 cut(s) 25, 349, 368
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 276, 637
BssMI GATC 3 cut(s) 98, 126, 534
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 542, 638
Bst4CI ACNGT 3 cut(s) 50, 85, 115
Bst6I CTCTTC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 361
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 3 cut(s) 101, 129, 537
BstMBI GATC 3 cut(s) 98, 126, 534
BstNI CCWGG 2 cut(s) 542, 638
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 540, 636
BstV1I GCAGC 1 cut(s) 399
BstX2I RGATCY 2 cut(s) 98, 126
BstXI CCANNNNNNTGG 1 cut(s) 644
BstYI RGATCY 2 cut(s) 98, 126
Bsu15I ATCGAT 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 468, 559
CfoI GCGC 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 69
Csp6I GTAC 1 cut(s) 358
CviAII CATG 3 cut(s) 10, 62, 615
CviJI RGCY 7 cut(s) 60, 79, 176, 412, 431, 457, 636
CviKI_1 RGCY 7 cut(s) 60, 79, 176, 412, 431, 457, 636
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 361
DpnI GATC 3 cut(s) 100, 128, 536
DpnII GATC 3 cut(s) 98, 126, 534
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 588
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EcoRII CCWGG 2 cut(s) 540, 636
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 3 cut(s) 13, 65, 618
FaiI YATR 5 cut(s) 11, 63, 146, 299, 616
FatI CATG 3 cut(s) 9, 61, 614
Fnu4HI GCNGC 1 cut(s) 413
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 413
FspI TGCGCA 1 cut(s) 31
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 413
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 13, 65, 618
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 5 cut(s) 155, 326, 332, 365, 473
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 461, 544
Hpy166II GTNNAC 2 cut(s) 358, 494
Hpy188I TCNGA 4 cut(s) 160, 313, 331, 364
Hpy188III TCNNGA 4 cut(s) 104, 323, 500, 590
Hpy8I GTNNAC 2 cut(s) 358, 494
HpyAV CCTTC 2 cut(s) 279, 616
HpyCH4III ACNGT 3 cut(s) 50, 85, 115
HpyCH4V TGCA 2 cut(s) 134, 399
HpyF3I CTNAG 1 cut(s) 361
Hsp92II CATG 3 cut(s) 13, 65, 618
HspAI GCGC 1 cut(s) 30
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 98, 126, 534
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 399
LweI GCATC 1 cut(s) 143
MaeIII GTNAC 3 cut(s) 50, 554, 565
MalI GATC 3 cut(s) 100, 128, 536
MboI GATC 3 cut(s) 98, 126, 534
MboII GAAGA 3 cut(s) 129, 419, 453
MflI RGATCY 2 cut(s) 98, 126
MluCI AATT 2 cut(s) 216, 649
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 3 cut(s) 496, 523, 612
MroI TCCGGA 1 cut(s) 103
MseI TTAA 3 cut(s) 35, 120, 483
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 542, 638
MvaI CCWGG 2 cut(s) 542, 638
NdeII GATC 3 cut(s) 98, 126, 534
NlaIII CATG 3 cut(s) 13, 65, 618
NmuCI GTSAC 1 cut(s) 554
NsbI TGCGCA 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 588
PciSI GCTCTTC 1 cut(s) 402
PfeI GAWTC 4 cut(s) 155, 326, 365, 473
PkrI GCNGC 1 cut(s) 414
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 2 cut(s) 540, 636
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 540, 636
PsuI RGATCY 2 cut(s) 98, 126
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 3 cut(s) 35, 120, 483
SatI GCNGC 1 cut(s) 413
Sau3AI GATC 3 cut(s) 98, 126, 534
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 2 cut(s) 542, 638
SetI ASST 4 cut(s) 190, 278, 414, 534
SfaNI GCATC 1 cut(s) 143
Sfr274I CTCGAG 1 cut(s) 588
SlaI CTCGAG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 374, 588
SmoI CTYRAG 2 cut(s) 374, 588
Sse9I AATT 2 cut(s) 216, 649
StyD4I CCNGG 2 cut(s) 540, 636
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 50, 85, 115
TaqI TCGA 2 cut(s) 69, 589
TasI AATT 2 cut(s) 216, 649
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 4 cut(s) 155, 326, 365, 473
Tru1I TTAA 3 cut(s) 35, 120, 483
Tru9I TTAA 3 cut(s) 35, 120, 483
TscAI CASTG 2 cut(s) 475, 559
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 2 cut(s) 129, 181
TspRI CASTG 2 cut(s) 475, 559
XhoI CTCGAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.