Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000990

Physical Location & Seq

Genomic Coordinates Reverse (-)

87678570 .. 87685584

Gene Structure 7015 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG570500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTGAAACGCTTAATTGTTGAACCGTCAGTAGCGCTTCTTGTATATAATTCTGTTAAGCATGTGGATAAGAAAGGACTGCCATGCCATGGCCCAGAAGATAAGATGGCTGCTGGAACGCGCGCTATGTTTGTCCCATACATCTCTGAGGATCTACGCCTTCGTGTGCTATCTTTGCGATATGTGGGGGTCTCCGTGGAGACCATAATGCAGAGACACACTGAATCCGTAGAGAGACAGGGTGGTCCATGTAATCGTGATGACCTCTTAACCCATAGGTACGTTCGCAGACAGGAGAGGAACATTCGACGTTCTACATATGAATTGGATGCGGATGATGCAGTTAGCATCAGCATGTGGGTGGAAAACCATCAGAATAGCATTTTCTTCTATGAGGATTTCTCCGAGACGGACCCTTTCACTTTGGGCATTCAAACAGACTGGCAGCTGCAACCGATTATTCGCTTTGGCAATCACAGCCTTATAGCCTCTGATTCAAGGTTCGGAACAAACAAATTAAAGGACTGGATTATGCAGTGTGATCCTCCACATGAACCCAAGAAAGCAAAAGTCCCTGTTAAAGAGTATGAATTTAATCAGAAGAAGCTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

23.75

Weight (kDa)

8.38

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13970 AT4G13970
fragaria_vesca	FvH4_3g45511 FvH4_3g45511
malus_domestica	MD09G1283600.v1.1 MD15G1114100.v1.1 MD17G1276900.v1.1 MD17G1277000.v1.1
prunus_persica	Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1
pyrus_communis	pycom09g19150 pycom15g10240 pycom17g27460 pycom17g27470
rosa_chinensis	RchiOBHm_Chr5g0069181 RchiOBHm_Chr5g0083411 RchiOBHm_Chr5g0083541 RchiOBHm_Chr5g0083621 RchiOBHm_Chr5g0083661
rosa_laevigata	RLG00000037036 RLG00000037037
rosa_multiflora	Rmu_sc0001444.1_g000006 Rmu_sc0001444.1_g000007 Rmu_sc0002245.1_g000017 Rmu_sc0002245.1_g000026 Rmu_sc0002245.1_g000039 Rmu_sc0006217.1_g000003 Rmu_sc0024012.1_g000001 Rmu_sc0042520.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001100 Rroxscaffold_3G00218200
rosa_rugosa	Rorug05G0484900 Rorug05G0484900 Rorug05G0485000
rosa_samantha	Rh5AG534600 Rh5AG534700 Rh5AG535800 Rh5AG536400 Rh5AG536500 Rh5AG537000 Rh5AG538000 Rh5BG561800 Rh5BG562100 Rh5BG562400 Rh5BG562500 Rh5BG562600 Rh5BG562900 Rh5BG563000 Rh5CG584200 Rh5CG584500 Rh5CG584800 Rh5CG585300 Rh5DG570500 Rh5DG570700 Rh5DG571100 Rh5DG571300
rosa_wichuraiana	Rw5G049860 Rw5G050490 Rw5G050520 Rw5G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccII	CGCG	2 cut(s)	121, 123
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	2 cut(s)	159, 536
AcsI	RAATTY	1 cut(s)	590
AfaI	GTAC	1 cut(s)	281
AfeI	AGCGCT	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	23, 434, 498
AluBI	AGCT	2 cut(s)	448, 607
AluI	AGCT	2 cut(s)	448, 607
Alw26I	GTCTC	5 cut(s)	194, 196, 208, 229, 401
AlwI	GGATC	2 cut(s)	159, 536
Aor51HI	AGCGCT	1 cut(s)	36
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	110, 445, 448
ApoI	RAATTY	1 cut(s)	590
AspLEI	GCGC	3 cut(s)	37, 123, 125
AspS9I	GGNCC	3 cut(s)	92, 245, 412
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	245, 412
BbvI	GCAGC	3 cut(s)	97, 435, 457
BccI	CCATC	2 cut(s)	100, 378
BcoDI	GTCTC	5 cut(s)	194, 196, 208, 229, 401
BfoI	RGCGCY	1 cut(s)	38
BisI	GCNGC	3 cut(s)	111, 446, 449
BlsI	GCNGC	3 cut(s)	112, 447, 450
Bme18I	GGWCC	2 cut(s)	245, 412
BmgT120I	GGNCC	3 cut(s)	92, 245, 412
BmiI	GGNNCC	1 cut(s)	414
BmsI	GCATC	3 cut(s)	319, 328, 357
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BsaI	GGTCTC	2 cut(s)	194, 196
BsaJI	CCNNGG	2 cut(s)	88, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	446, 530
BseDI	CCNNGG	2 cut(s)	88, 195
BseGI	GGATG	2 cut(s)	334, 340
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	446, 530
BsePI	GCGCGC	1 cut(s)	121
BseXI	GCAGC	3 cut(s)	97, 435, 457
Bsh1236I	CGCG	2 cut(s)	121, 123
BshFI	GGCC	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	119, 557
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	5 cut(s)	194, 196, 208, 229, 401
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	119, 557
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	93
Bso31I	GGTCTC	2 cut(s)	194, 196
Bsp143I	GATC	2 cut(s)	151, 541
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	139
BspFNI	CGCG	2 cut(s)	121, 123
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	159, 536
BspTNI	GGTCTC	2 cut(s)	194, 196
BsrI	ACTGG	2 cut(s)	446, 530
BssECI	CCNNGG	2 cut(s)	88, 195
BssHII	GCGCGC	1 cut(s)	121
BssMI	GATC	2 cut(s)	151, 541
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	2 cut(s)	88, 195
BstF5I	GGATG	2 cut(s)	334, 340
BstFNI	CGCG	2 cut(s)	121, 123
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	3 cut(s)	37, 123, 125
BstKTI	GATC	2 cut(s)	154, 544
BstMAI	GTCTC	5 cut(s)	194, 196, 208, 229, 401
BstMBI	GATC	2 cut(s)	151, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 338, 477
BstNSI	RCATGY	2 cut(s)	65, 358
BstUI	CGCG	2 cut(s)	121, 123
BstV1I	GCAGC	3 cut(s)	97, 435, 457
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	2 cut(s)	88, 195
BtsCI	GGATG	2 cut(s)	334, 340
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	2 cut(s)	219, 542
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	3 cut(s)	37, 123, 125
Cfr13I	GGNCC	3 cut(s)	92, 245, 412
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	6 cut(s)	62, 84, 89, 249, 355, 551
CviJI	RGCY	6 cut(s)	93, 110, 448, 480, 488, 607
CviKI_1	RGCY	6 cut(s)	93, 110, 448, 480, 488, 607
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	2 cut(s)	153, 543
DpnII	GATC	2 cut(s)	151, 541
DrdI	GACNNNNNNGTC	1 cut(s)	243
DseDI	GACNNNNNNGTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	88
Eco31I	GGTCTC	2 cut(s)	194, 196
Eco47I	GGWCC	2 cut(s)	245, 412
Eco47III	AGCGCT	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	6 cut(s)	65, 87, 92, 252, 358, 554
FaqI	GGGAC	2 cut(s)	119, 557
FatI	CATG	6 cut(s)	61, 83, 88, 248, 354, 550
FauNDI	CATATG	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	111, 446, 449
FokI	GGATG	2 cut(s)	341, 347
Fsp4HI	GCNGC	3 cut(s)	111, 446, 449
GlaI	GCGC	3 cut(s)	36, 122, 124
GluI	GCNGC	3 cut(s)	111, 446, 449
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	93
HhaI	GCGC	3 cut(s)	37, 123, 125
Hin1II	CATG	6 cut(s)	65, 87, 92, 252, 358, 554
Hin6I	GCGC	3 cut(s)	35, 121, 123
HinP1I	GCGC	3 cut(s)	35, 121, 123
HinfI	GANTC	2 cut(s)	224, 494
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	6 cut(s)	148, 375, 406, 493, 506, 600
Hpy188III	TCNNGA	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	2 cut(s)	282, 310
HpyCH4V	TGCA	4 cut(s)	211, 341, 451, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 338, 477
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	282, 310
Hsp92II	CATG	6 cut(s)	65, 87, 92, 252, 358, 554
HspAI	GCGC	3 cut(s)	35, 121, 123
Kzo9I	GATC	2 cut(s)	151, 541
LpnPI	CCDG	7 cut(s)	99, 108, 224, 278, 427, 511, 588
Lsp1109I	GCAGC	3 cut(s)	97, 435, 457
LweI	GCATC	3 cut(s)	319, 328, 357
MaeII	ACGT	2 cut(s)	282, 310
MalI	GATC	2 cut(s)	153, 543
MboI	GATC	2 cut(s)	151, 541
MboII	GAAGA	3 cut(s)	110, 379, 613
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	5 cut(s)	15, 49, 323, 515, 590
MnlI	CCTC	6 cut(s)	142, 275, 291, 388, 499, 555
MseI	TTAA	6 cut(s)	14, 57, 269, 518, 579, 594
MslI	CAYNNNNRTG	2 cut(s)	353, 359
MspA1I	CMGCKG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	429
MvnI	CGCG	2 cut(s)	121, 123
MwoI	GCNNNNNNNGC	3 cut(s)	175, 338, 477
NcoI	CCATGG	1 cut(s)	88
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	2 cut(s)	151, 541
NlaIII	CATG	6 cut(s)	65, 87, 92, 252, 358, 554
NlaIV	GGNNCC	1 cut(s)	414
NspI	RCATGY	2 cut(s)	65, 358
PauI	GCGCGC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	224, 494
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	112, 447, 450
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	92, 245, 412
PsuI	RGATCY	1 cut(s)	151
PteI	GCGCGC	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	353, 359
SaqAI	TTAA	6 cut(s)	14, 57, 269, 518, 579, 594
SatI	GCNGC	3 cut(s)	111, 446, 449
Sau3AI	GATC	2 cut(s)	151, 541
Sau96I	GGNCC	3 cut(s)	92, 245, 412
SetI	ASST	7 cut(s)	267, 281, 285, 313, 450, 503, 609
SfaNI	GCATC	3 cut(s)	319, 328, 357
SinI	GGWCC	2 cut(s)	245, 412
SmiMI	CAYNNNNRTG	2 cut(s)	353, 359
Sse9I	AATT	5 cut(s)	15, 49, 323, 515, 590
SsiI	CCGC	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	2 cut(s)	285, 313
TaqI	TCGA	1 cut(s)	307
TasI	AATT	5 cut(s)	15, 49, 323, 515, 590
TfiI	GAWTC	2 cut(s)	224, 494
Tru1I	TTAA	6 cut(s)	14, 57, 269, 518, 579, 594
Tru9I	TTAA	6 cut(s)	14, 57, 269, 518, 579, 594
TscAI	CASTG	2 cut(s)	226, 542
TseI	GCWGC	3 cut(s)	110, 445, 448
TspDTI	ATGAA	3 cut(s)	336, 567, 603
TspGWI	ACGGA	3 cut(s)	184, 217, 425
TspRI	CASTG	2 cut(s)	226, 542
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	245, 412
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	2 cut(s)	65, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.