Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024012.1

Orthogroup ID

OG0000990

Physical Location & Seq

Genomic Coordinates Forward (+)

5 .. 1429

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024012.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggtgaaacgcttaattgctgaaccgtcagtagcgcttcttgtatataattctgttaagcatgtggataagaaagggttgccatgccatggccctgaagataagatgtcttctggaacgcgcgctatgtttgccccatacatctctgaggatctacgccttcgtgtgctatctttgctatatgtgggggtctccgtggagaccataatgcagagacatgctgaatctgtagagagacagggtggtccatgtaatcgtgatgacctcttaacccataggtacgttcgcagacaggagaggatcattcgacgttctacatatgaattggatgcggatgatgcagttagcatcggcatgtgggtggaaaaccatcagaatatcattttcttctatgaggatttctccgagacggaccctttcactttgggcattcaaacagactggcagctgcaacagatgattcgctttggcaatcacagccttatagcctctgattcaaggttcggaacaaacaaattaaagtatcctgttcacagtctccttgtatttaaccaagacaacaaggccattccggtagcatggatatgctcagtgctaataagcttttggcgggttcgtcatggatggcataagaacttggtaaagaaatgtttggaggacgagacgcgagctacaatatcaagaaggcttcatcaggcagtagataacatatgtcaacaacgaggaacagatggtttgtttgcggatttcatggaagattttgttgatgcatcagattttgtggattactttaaggcaacctggtatcctagaataggttggtcactatcatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

32.22

Weight (kDa)

6.8

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13970 AT4G13970
fragaria_vesca	FvH4_3g45511 FvH4_3g45511
malus_domestica	MD09G1283600.v1.1 MD15G1114100.v1.1 MD17G1276900.v1.1 MD17G1277000.v1.1
prunus_persica	Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1
pyrus_communis	pycom09g19150 pycom15g10240 pycom17g27460 pycom17g27470
rosa_chinensis	RchiOBHm_Chr5g0069181 RchiOBHm_Chr5g0083411 RchiOBHm_Chr5g0083541 RchiOBHm_Chr5g0083621 RchiOBHm_Chr5g0083661
rosa_laevigata	RLG00000037036 RLG00000037037
rosa_multiflora	Rmu_sc0001444.1_g000006 Rmu_sc0001444.1_g000007 Rmu_sc0002245.1_g000017 Rmu_sc0002245.1_g000026 Rmu_sc0002245.1_g000039 Rmu_sc0006217.1_g000003 Rmu_sc0024012.1_g000001 Rmu_sc0042520.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001100 Rroxscaffold_3G00218200
rosa_rugosa	Rorug05G0484900 Rorug05G0484900 Rorug05G0485000
rosa_samantha	Rh5AG534600 Rh5AG534700 Rh5AG535800 Rh5AG536400 Rh5AG536500 Rh5AG537000 Rh5AG538000 Rh5BG561800 Rh5BG562100 Rh5BG562400 Rh5BG562500 Rh5BG562600 Rh5BG562900 Rh5BG563000 Rh5CG584200 Rh5CG584500 Rh5CG584800 Rh5CG585300 Rh5DG570500 Rh5DG570700 Rh5DG571100 Rh5DG571300
rosa_wichuraiana	Rw5G049860 Rw5G050490 Rw5G050520 Rw5G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	243
AccB7I	CCANNNNNTGG	1 cut(s)	89
AccII	CGCG	3 cut(s)	121, 123, 667
AciI	CCGC	3 cut(s)	332, 610, 743
AclWI	GGATC	2 cut(s)	159, 308
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	281
AfeI	AGCGCT	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	89, 815
AgsI	TTSAA	2 cut(s)	434, 498
AjnI	CCWGG	1 cut(s)	800
AluBI	AGCT	3 cut(s)	448, 603, 671
AluI	AGCT	3 cut(s)	448, 603, 671
Alw26I	GTCTC	7 cut(s)	194, 196, 208, 229, 401, 542, 656
AlwI	GGATC	2 cut(s)	159, 308
Aor51HI	AGCGCT	1 cut(s)	36
AoxI	GGCC	2 cut(s)	91, 564
ApeKI	GCWGC	2 cut(s)	445, 448
AspLEI	GCGC	3 cut(s)	37, 123, 125
AspS9I	GGNCC	3 cut(s)	92, 245, 412
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	245, 412
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	435, 457
BccI	CCATC	3 cut(s)	378, 618, 725
BciT130I	CCWGG	1 cut(s)	802
BciVI	GTATCC	2 cut(s)	534, 816
BcoDI	GTCTC	7 cut(s)	194, 196, 208, 229, 401, 542, 656
BfaI	CTAG	1 cut(s)	810
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	38
BfuI	GTATCC	2 cut(s)	534, 816
BisI	GCNGC	2 cut(s)	446, 449
BlsI	GCNGC	2 cut(s)	447, 450
Bme1390I	CCNGG	1 cut(s)	802
Bme18I	GGWCC	2 cut(s)	245, 412
BmgT120I	GGNCC	3 cut(s)	92, 245, 412
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	802
BmsI	GCATC	5 cut(s)	319, 328, 357, 757, 779
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BsaI	GGTCTC	2 cut(s)	194, 196
BsaJI	CCNNGG	2 cut(s)	88, 195
BsaWI	WCCGGW	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 815
Bse1I	ACTGG	1 cut(s)	446
BseBI	CCWGG	1 cut(s)	802
BseDI	CCNNGG	2 cut(s)	88, 195
BseGI	GGATG	3 cut(s)	334, 340, 629
BseLI	CCNNNNNNNGG	2 cut(s)	89, 815
BseMII	CTCAG	2 cut(s)	138, 603
BseNI	ACTGG	1 cut(s)	446
BsePI	GCGCGC	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	435, 457
Bsh1236I	CGCG	3 cut(s)	121, 123, 667
BshFI	GGCC	2 cut(s)	93, 566
BsiSI	CCGG	1 cut(s)	572
BslI	CCNNNNNNNGG	2 cut(s)	89, 815
BsmAI	GTCTC	7 cut(s)	194, 196, 208, 229, 401, 542, 656
BsmBI	CGTCTC	2 cut(s)	401, 656
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	93, 566
Bso31I	GGTCTC	2 cut(s)	194, 196
Bsp143I	GATC	2 cut(s)	151, 300
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	3 cut(s)	332, 610, 743
BspANI	GGCC	2 cut(s)	93, 566
BspCNI	CTCAG	2 cut(s)	139, 602
BspFNI	CGCG	3 cut(s)	121, 123, 667
BspLI	GGNNCC	1 cut(s)	414
BspPI	GGATC	2 cut(s)	159, 308
BspTNI	GGTCTC	2 cut(s)	194, 196
BsrI	ACTGG	1 cut(s)	446
BssECI	CCNNGG	2 cut(s)	88, 195
BssHII	GCGCGC	1 cut(s)	121
BssMI	GATC	2 cut(s)	151, 300
BssT1I	CCWWGG	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	802
Bst4CI	ACNGT	2 cut(s)	27, 536
BstC8I	GCNNGC	2 cut(s)	123, 669
BstDEI	CTNAG	2 cut(s)	147, 589
BstDSI	CCRYGG	2 cut(s)	88, 195
BstENI	CCTNNNNNAGG	1 cut(s)	813
BstF5I	GGATG	3 cut(s)	334, 340, 629
BstFNI	CGCG	3 cut(s)	121, 123, 667
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	3 cut(s)	37, 123, 125
BstKTI	GATC	2 cut(s)	154, 303
BstMAI	GTCTC	7 cut(s)	194, 196, 208, 229, 401, 542, 656
BstMBI	GATC	2 cut(s)	151, 300
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 175, 338, 477
BstNI	CCWGG	1 cut(s)	802
BstNSI	RCATGY	3 cut(s)	65, 221, 358
BstSCI	CCNGG	1 cut(s)	800
BstSFI	CTRYAG	1 cut(s)	228
BstUI	CGCG	3 cut(s)	121, 123, 667
BstV1I	GCAGC	2 cut(s)	435, 457
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	2 cut(s)	534, 816
BsuRI	GGCC	2 cut(s)	93, 566
BtgI	CCRYGG	2 cut(s)	88, 195
BtsCI	GGATG	3 cut(s)	334, 340, 629
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	123, 669
CfoI	GCGC	3 cut(s)	37, 123, 125
Cfr13I	GGNCC	3 cut(s)	92, 245, 412
CseI	GACGC	1 cut(s)	673
CsiI	ACCWGGT	1 cut(s)	800
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	9 cut(s)	62, 84, 89, 218, 249, 355, 579, 620, 751
CviJI	RGCY	8 cut(s)	93, 448, 480, 488, 566, 603, 671, 688
CviKI_1	RGCY	8 cut(s)	93, 448, 480, 488, 566, 603, 671, 688
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	147, 589
DpnI	GATC	2 cut(s)	153, 302
DpnII	GATC	2 cut(s)	151, 300
DrdI	GACNNNNNNGTC	1 cut(s)	243
DseDI	GACNNNNNNGTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	88
Eco31I	GGTCTC	2 cut(s)	194, 196
Eco47I	GGWCC	2 cut(s)	245, 412
Eco47III	AGCGCT	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	800
EcoT14I	CCWWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	88
Esp3I	CGTCTC	2 cut(s)	401, 656
FaeI	CATG	9 cut(s)	65, 87, 92, 221, 252, 358, 582, 623, 754
FatI	CATG	9 cut(s)	61, 83, 88, 217, 248, 354, 578, 619, 750
FauI	CCCGC	1 cut(s)	603
FauNDI	CATATG	2 cut(s)	319, 710
Fnu4HI	GCNGC	2 cut(s)	446, 449
FokI	GGATG	3 cut(s)	341, 347, 636
Fsp4HI	GCNGC	2 cut(s)	446, 449
FspBI	CTAG	1 cut(s)	810
GlaI	GCGC	3 cut(s)	36, 122, 124
GluI	GCNGC	2 cut(s)	446, 449
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	93, 566
HapII	CCGG	1 cut(s)	572
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	3 cut(s)	37, 123, 125
Hin1II	CATG	9 cut(s)	65, 87, 92, 221, 252, 358, 582, 623, 754
Hin6I	GCGC	3 cut(s)	35, 121, 123
HinP1I	GCGC	3 cut(s)	35, 121, 123
HincII	GTYRAC	1 cut(s)	716
HindII	GTYRAC	1 cut(s)	716
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	3 cut(s)	224, 460, 494
HpaII	CCGG	1 cut(s)	572
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	532, 716
Hpy188I	TCNGA	6 cut(s)	148, 375, 406, 493, 506, 775
Hpy188III	TCNNGA	3 cut(s)	114, 257, 681
Hpy8I	GTNNAC	2 cut(s)	532, 716
Hpy99I	CGWCG	1 cut(s)	312
HpyAV	CCTTC	2 cut(s)	170, 678
HpyCH4III	ACNGT	2 cut(s)	27, 536
HpyCH4IV	ACGT	2 cut(s)	282, 310
HpyCH4V	TGCA	4 cut(s)	211, 341, 451, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 175, 338, 477
HpyF3I	CTNAG	2 cut(s)	147, 589
HpySE526I	ACGT	2 cut(s)	282, 310
Hsp92II	CATG	9 cut(s)	65, 87, 92, 221, 252, 358, 582, 623, 754
HspAI	GCGC	3 cut(s)	35, 121, 123
Kzo9I	GATC	2 cut(s)	151, 300
Lsp1109I	GCAGC	2 cut(s)	435, 457
LweI	GCATC	5 cut(s)	319, 328, 357, 757, 779
MabI	ACCWGGT	1 cut(s)	800
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	2 cut(s)	282, 310
MaeIII	GTNAC	1 cut(s)	822
MalI	GATC	2 cut(s)	153, 302
MboI	GATC	2 cut(s)	151, 300
MboII	GAAGA	4 cut(s)	102, 110, 379, 767
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	4 cut(s)	15, 49, 323, 515
MnlI	CCTC	7 cut(s)	142, 275, 291, 388, 499, 649, 716
Mph1103I	ATGCAT	1 cut(s)	772
MseI	TTAA	7 cut(s)	14, 57, 269, 518, 549, 792, 835
MslI	CAYNNNNRTG	3 cut(s)	353, 359, 583
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	1 cut(s)	572
MspR9I	CCNGG	1 cut(s)	802
Mva1269I	GAATGC	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	802
MvnI	CGCG	3 cut(s)	121, 123, 667
MwoI	GCNNNNNNNGC	4 cut(s)	131, 175, 338, 477
NcoI	CCATGG	1 cut(s)	88
NdeI	CATATG	2 cut(s)	319, 710
NdeII	GATC	2 cut(s)	151, 300
NlaIII	CATG	9 cut(s)	65, 87, 92, 221, 252, 358, 582, 623, 754
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	822
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	3 cut(s)	65, 221, 358
PauI	GCGCGC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	3 cut(s)	224, 460, 494
PflMI	CCANNNNNTGG	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	447, 450
Psp6I	CCWGG	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	800
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	3 cut(s)	92, 245, 412
PsuI	RGATCY	1 cut(s)	151
PteI	GCGCGC	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	3 cut(s)	353, 359, 583
SaqAI	TTAA	7 cut(s)	14, 57, 269, 518, 549, 792, 835
SatI	GCNGC	2 cut(s)	446, 449
Sau3AI	GATC	2 cut(s)	151, 300
Sau96I	GGNCC	3 cut(s)	92, 245, 412
ScrFI	CCNGG	1 cut(s)	802
SexAI	ACCWGGT	1 cut(s)	800
SfaNI	GCATC	5 cut(s)	319, 328, 357, 757, 779
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	2 cut(s)	245, 412
SmiMI	CAYNNNNRTG	3 cut(s)	353, 359, 583
Sse9I	AATT	4 cut(s)	15, 49, 323, 515
SsiI	CCGC	3 cut(s)	332, 610, 743
SspMI	CTAG	1 cut(s)	810
StyD4I	CCNGG	1 cut(s)	800
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	27, 536
TaiI	ACGT	2 cut(s)	285, 313
TaqI	TCGA	1 cut(s)	307
TasI	AATT	4 cut(s)	15, 49, 323, 515
TfiI	GAWTC	3 cut(s)	224, 460, 494
Tru1I	TTAA	7 cut(s)	14, 57, 269, 518, 549, 792, 835
Tru9I	TTAA	7 cut(s)	14, 57, 269, 518, 549, 792, 835
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	822
TseI	GCWGC	2 cut(s)	445, 448
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	3 cut(s)	336, 680, 739
TspGWI	ACGGA	2 cut(s)	184, 425
TspRI	CASTG	1 cut(s)	597
Van91I	CCANNNNNTGG	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	245, 412
XagI	CCTNNNNNAGG	1 cut(s)	813
XceI	RCATGY	3 cut(s)	65, 221, 358
XspI	CTAG	1 cut(s)	810
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.