Rh5BG562100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000990
Physical Location & Seq
Reverse (-)
89144465 .. 89144707
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG562100.1

Sequence Viewer

Length: 243 bp
ATGGTTGTGTACTCGGAACCATTGCTCAAGTTCTCATCAACATCATGTTGCAACAAGGAAGAGCAGCCTGTTGAGAATGGGGCCACTGAAATTGGGTCTAGTGAGAAGCCATCTTCAATCATTGAATCTCATCTTAAAAAGTGTGAACTTCAAGAGGGTTCCGAAATCATCAACAACAATGAGGTGACCCGCCAGCCCGTTGTCAGTGACATCAATGTTACTTCTGCCAAGGGAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.65

Weight (kDa)

4.72

Isoelectric Point (pI)

65.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 190
AfaI GTAC 1 cut(s) 11
AgsI TTSAA 3 cut(s) 117, 125, 152
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 196
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 118
BfaI CTAG 1 cut(s) 99
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 3 cut(s) 18, 82, 160
BpuEI CTTGAG 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 83
BsnI GGCC 1 cut(s) 83
BspACI CCGC 1 cut(s) 190
BspANI GGCC 1 cut(s) 83
BspLI GGNNCC 3 cut(s) 18, 82, 160
BspQI GCTCTTC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 184
BstPI GGTNACC 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 84, 211
Cac8I GCNNGC 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 1 cut(s) 45
CviJI RGCY 4 cut(s) 67, 83, 109, 196
CviKI_1 RGCY 4 cut(s) 67, 83, 109, 196
CviQI GTAC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 228
Eco91I GGTNACC 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 48
FaiI YATR 1 cut(s) 46
FatI CATG 1 cut(s) 44
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 1 cut(s) 99
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 1 cut(s) 83
Hin1II CATG 1 cut(s) 48
HinfI GANTC 1 cut(s) 125
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 10, 146
Hpy188I TCNGA 2 cut(s) 16, 163
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 2 cut(s) 10, 146
HpyCH4V TGCA 1 cut(s) 51
Hsp92II CATG 1 cut(s) 48
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 2 cut(s) 81, 206
Lsp1109I GCAGC 1 cut(s) 76
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 3 cut(s) 184, 206, 217
MboII GAAGA 2 cut(s) 71, 105
MluCI AATT 1 cut(s) 90
MnlI CCTC 2 cut(s) 148, 175
MseI TTAA 1 cut(s) 135
NlaIII CATG 1 cut(s) 48
NlaIV GGNNCC 3 cut(s) 18, 82, 160
NmuCI GTSAC 2 cut(s) 184, 206
PciSI GCTCTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 66
PspEI GGTNACC 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 18, 82, 160
PspPI GGNCC 1 cut(s) 81
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 81
SetI ASST 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 90
SsiI CCGC 1 cut(s) 190
SspMI CTAG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 228
TasI AATT 1 cut(s) 90
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 91, 211
TseFI GTSAC 2 cut(s) 184, 206
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 2 cut(s) 184, 206
TspRI CASTG 2 cut(s) 91, 211
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.