Rmu_sc0001444.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001444.1
OG0000990
Physical Location & Seq
Forward (+)
19316 .. 20610
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001444.1_g000006.1.cds

Sequence Viewer

Length: 1047 bp
atggctagatgggatgagattctgtctcttcctgtacagaatcctccaactttggagttttctgctgctgatcttgtgtggtcgaaggtgaaaggttggtgtgacaagaaagatggagttgctgtaatcccctatgccagagttgatgcttttgtgaggggtgaatcttcgaacaaagagtgtccgacgagatttcatgttgaagcgaggcggcggcggcaggcaaagacgaattgcaaaccaaaggttgatggcatccttgaatacattctgatgggcggctctatacgacccagtaggactaattatgtcccaaagaagaaaaattctggtcgaccaaacaccaagagaggttgtacctgccactttatggtgaaacgcttaattgctgaaccgtcagtagcacttcttgtatataattctgttaagcatgtggataagaaaggactgccatgccatggcccagaagataagatggctgctggaacgcgcgctatgtttgccccatacatctctgaggatctacgccttcgtgtgctatctttgctatatgtgggggtctccgtggggaccataatgcagagagacagggtggtccatgagaggatcattcgacgttctacatatgaattggatgcggatgatgcagttagcatcagcatgtgggtggaaaaccatcagaatagcattttcttctatgagcatttctccgagacggaccctttcactttgggcattcaaacagactggcagctgcaacagatgattcgctttggcaatcacagccttgtagcctctgattcaaggttcggaacaaacaaattaaagtatcctgttcacagtctccttgtatttaaccaagacaacaaggccattccggtggcatggatagtgagtccaaaatttgcaagttctaatacccataaatggatgagagctcttttcaatagagttcagacgaaagatccttcatggaagttggctgggttcatagtggatgatcctcaggctgatgtacacactatcaggtgctcagtcattgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.63

Weight (kDa)

9.54

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
Acc36I ACCTGC 1 cut(s) 368
AccB7I CCANNNNNTGG 2 cut(s) 370, 458
AccI GTMKAC 1 cut(s) 334
AccII CGCG 2 cut(s) 490, 492
AciI CCGC 5 cut(s) 211, 214, 217, 279, 638
AclWI GGATC 4 cut(s) 528, 614, 959, 995
AcsI RAATTY 2 cut(s) 325, 902
AfaI GTAC 3 cut(s) 36, 358, 1017
AfiI CCNNNNNNNGG 3 cut(s) 370, 458, 927
AgsI TTSAA 5 cut(s) 203, 263, 740, 804, 946
AluBI AGCT 2 cut(s) 754, 938
AluI AGCT 2 cut(s) 754, 938
Alw21I GWGCWC 2 cut(s) 940, 1034
Alw26I GTCTC 5 cut(s) 30, 565, 579, 707, 848
AlwI GGATC 4 cut(s) 528, 614, 959, 995
AoxI GGCC 2 cut(s) 460, 870
ApeKI GCWGC 4 cut(s) 65, 479, 751, 754
ApoI RAATTY 2 cut(s) 325, 902
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 2 cut(s) 492, 494
AspS9I GGNCC 4 cut(s) 461, 570, 595, 718
AsuHPI GGTGA 3 cut(s) 100, 173, 385
AsuII TTCGAA 1 cut(s) 170
AvaII GGWCC 3 cut(s) 570, 595, 718
AxyI CCTNAGG 1 cut(s) 1005
BanII GRGCYC 1 cut(s) 940
Bbv12I GWGCWC 2 cut(s) 940, 1034
BbvI GCAGC 4 cut(s) 52, 466, 741, 763
BccI CCATC 6 cut(s) 3, 107, 245, 268, 469, 684
BciVI GTATCC 1 cut(s) 840
BcoDI GTCTC 5 cut(s) 30, 565, 579, 707, 848
BfaI CTAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 368
BfuI GTATCC 1 cut(s) 840
BisI GCNGC 8 cut(s) 66, 212, 215, 218, 280, 480, 752, 755
BlsI GCNGC 8 cut(s) 67, 213, 216, 219, 281, 481, 753, 756
Bme18I GGWCC 3 cut(s) 570, 595, 718
BmgT120I GGNCC 4 cut(s) 461, 570, 595, 718
BmiI GGNNCC 2 cut(s) 571, 720
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 5 cut(s) 136, 264, 625, 634, 663
BmuI ACTGGG 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 692, 724
Bpu14I TTCGAA 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 2 cut(s) 457, 564
BsaWI WCCGGW 1 cut(s) 877
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 458, 927
Bse1I ACTGG 2 cut(s) 294, 752
Bse21I CCTNAGG 1 cut(s) 1005
BseDI CCNNGG 2 cut(s) 457, 564
BseGI GGATG 6 cut(s) 19, 255, 640, 646, 936, 1003
BseLI CCNNNNNNNGG 3 cut(s) 370, 458, 927
BseMII CTCAG 3 cut(s) 507, 1019, 1047
BseNI ACTGG 2 cut(s) 294, 752
BsePI GCGCGC 1 cut(s) 490
BseXI GCAGC 4 cut(s) 52, 466, 741, 763
BseYI CCCAGC 1 cut(s) 983
Bsh1236I CGCG 2 cut(s) 490, 492
BshFI GGCC 2 cut(s) 462, 872
BsiHKAI GWGCWC 2 cut(s) 940, 1034
BsiSI CCGG 1 cut(s) 878
BslFI GGGAC 2 cut(s) 296, 583
BslI CCNNNNNNNGG 3 cut(s) 370, 458, 927
BsmAI GTCTC 5 cut(s) 30, 565, 579, 707, 848
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 2 cut(s) 296, 583
BsmI GAATGC 1 cut(s) 735
BsnI GGCC 2 cut(s) 462, 872
Bso31I GGTCTC 1 cut(s) 565
Bsp119I TTCGAA 1 cut(s) 170
Bsp1286I GDGCHC 2 cut(s) 940, 1034
Bsp1407I TGTACA 2 cut(s) 34, 1015
Bsp143I GATC 5 cut(s) 70, 520, 606, 964, 1000
Bsp19I CCATGG 1 cut(s) 457
BspACI CCGC 5 cut(s) 211, 214, 217, 279, 638
BspANI GGCC 2 cut(s) 462, 872
BspCNI CTCAG 3 cut(s) 508, 1018, 1046
BspFNI CGCG 2 cut(s) 490, 492
BspLI GGNNCC 2 cut(s) 571, 720
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 4 cut(s) 528, 614, 959, 995
BspT104I TTCGAA 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 565
BsrGI TGTACA 2 cut(s) 34, 1015
BsrI ACTGG 2 cut(s) 294, 752
BssECI CCNNGG 2 cut(s) 457, 564
BssHII GCGCGC 1 cut(s) 490
BssMI GATC 5 cut(s) 70, 520, 606, 964, 1000
BssT1I CCWWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 396, 842
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 2 cut(s) 34, 1015
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 222, 492
BstDEI CTNAG 3 cut(s) 516, 1005, 1033
BstDSI CCRYGG 2 cut(s) 457, 564
BstF5I GGATG 6 cut(s) 19, 255, 640, 646, 936, 1003
BstFNI CGCG 2 cut(s) 490, 492
BstHHI GCGC 2 cut(s) 492, 494
BstKTI GATC 5 cut(s) 73, 523, 609, 967, 1003
BstMAI GTCTC 5 cut(s) 30, 565, 579, 707, 848
BstMBI GATC 5 cut(s) 70, 520, 606, 964, 1000
BstMWI GCNNNNNNNGC 5 cut(s) 217, 500, 544, 644, 783
BstNSI RCATGY 2 cut(s) 434, 664
BstUI CGCG 2 cut(s) 490, 492
BstV1I GCAGC 4 cut(s) 52, 466, 741, 763
BstX2I RGATCY 2 cut(s) 520, 964
BstXI CCANNNNNNTGG 1 cut(s) 880
BstYI RGATCY 2 cut(s) 520, 964
Bsu36I CCTNAGG 1 cut(s) 1005
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 2 cut(s) 462, 872
BtgI CCRYGG 2 cut(s) 457, 564
BtsCI GGATG 6 cut(s) 19, 255, 640, 646, 936, 1003
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 222, 492
CfoI GCGC 2 cut(s) 492, 494
Cfr13I GGNCC 4 cut(s) 461, 570, 595, 718
Csp6I GTAC 3 cut(s) 35, 357, 1016
CviAII CATG 8 cut(s) 197, 431, 453, 458, 599, 661, 885, 972
CviQI GTAC 3 cut(s) 35, 357, 1016
DdeI CTNAG 3 cut(s) 516, 1005, 1033
DpnI GATC 5 cut(s) 72, 522, 608, 966, 1002
DpnII GATC 5 cut(s) 70, 520, 606, 964, 1000
DrdI GACNNNNNNGTC 1 cut(s) 593
DseDI GACNNNNNNGTC 1 cut(s) 593
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 938
Eco130I CCWWGG 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 940
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 3 cut(s) 570, 595, 718
Eco53kI GAGCTC 1 cut(s) 938
Eco81I CCTNAGG 1 cut(s) 1005
EcoICRI GAGCTC 1 cut(s) 938
EcoT14I CCWWGG 1 cut(s) 457
EcoT38I GRGCYC 1 cut(s) 940
ErhI CCWWGG 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 707
FaeI CATG 8 cut(s) 200, 434, 456, 461, 602, 664, 888, 975
FaqI GGGAC 2 cut(s) 296, 583
FatI CATG 8 cut(s) 196, 430, 452, 457, 598, 660, 884, 971
FauNDI CATATG 1 cut(s) 625
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 8 cut(s) 66, 212, 215, 218, 280, 480, 752, 755
FokI GGATG 6 cut(s) 26, 242, 647, 653, 943, 1010
FriOI GRGCYC 1 cut(s) 940
Fsp4HI GCNGC 8 cut(s) 66, 212, 215, 218, 280, 480, 752, 755
FspBI CTAG 1 cut(s) 6
GlaI GCGC 2 cut(s) 491, 493
GluI GCNGC 8 cut(s) 66, 212, 215, 218, 280, 480, 752, 755
GsaI CCCAGC 1 cut(s) 987
HaeIII GGCC 2 cut(s) 462, 872
HapII CCGG 1 cut(s) 878
HhaI GCGC 2 cut(s) 492, 494
Hin1II CATG 8 cut(s) 200, 434, 456, 461, 602, 664, 888, 975
Hin6I GCGC 2 cut(s) 490, 492
HinP1I GCGC 2 cut(s) 490, 492
HincII GTYRAC 1 cut(s) 335
HindII GTYRAC 1 cut(s) 335
HinfI GANTC 6 cut(s) 19, 40, 164, 766, 800, 895
HpaII CCGG 1 cut(s) 878
HphI GGTGA 3 cut(s) 100, 173, 385
Hpy166II GTNNAC 3 cut(s) 335, 838, 1018
Hpy188I TCNGA 8 cut(s) 186, 273, 517, 681, 712, 799, 812, 957
Hpy8I GTNNAC 3 cut(s) 335, 838, 1018
Hpy99I CGWCG 2 cut(s) 190, 618
HpyAV CCTTC 3 cut(s) 79, 539, 978
HpyCH4III ACNGT 2 cut(s) 396, 842
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 5 cut(s) 237, 580, 647, 757, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 217, 500, 544, 644, 783
HpyF3I CTNAG 3 cut(s) 516, 1005, 1033
HpySE526I ACGT 1 cut(s) 616
Hsp92II CATG 8 cut(s) 200, 434, 456, 461, 602, 664, 888, 975
HspAI GCGC 2 cut(s) 490, 492
Kzo9I GATC 5 cut(s) 70, 520, 606, 964, 1000
Lsp1109I GCAGC 4 cut(s) 52, 466, 741, 763
LweI GCATC 5 cut(s) 136, 264, 625, 634, 663
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 1 cut(s) 101
MalI GATC 5 cut(s) 72, 522, 608, 966, 1002
MboI GATC 5 cut(s) 70, 520, 606, 964, 1000
MboII GAAGA 5 cut(s) 20, 159, 331, 479, 685
MflI RGATCY 2 cut(s) 520, 964
MhlI GDGCHC 2 cut(s) 940, 1034
MluCI AATT 8 cut(s) 232, 304, 325, 384, 418, 629, 821, 902
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 2 cut(s) 71, 209
MnlI CCTC 8 cut(s) 54, 150, 201, 344, 511, 597, 805, 1014
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 5 cut(s) 383, 426, 824, 855, 1045
MslI CAYNNNNRTG 4 cut(s) 272, 659, 665, 878
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 1 cut(s) 878
Mva1269I GAATGC 1 cut(s) 735
MvnI CGCG 2 cut(s) 490, 492
MwoI GCNNNNNNNGC 5 cut(s) 217, 500, 544, 644, 783
NcoI CCATGG 1 cut(s) 457
NdeI CATATG 1 cut(s) 625
NdeII GATC 5 cut(s) 70, 520, 606, 964, 1000
NlaIII CATG 8 cut(s) 200, 434, 456, 461, 602, 664, 888, 975
NlaIV GGNNCC 2 cut(s) 571, 720
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 2 cut(s) 434, 664
NspV TTCGAA 1 cut(s) 170
PauI GCGCGC 1 cut(s) 490
PctI GAATGC 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 5 cut(s) 19, 40, 164, 766, 800
PflMI CCANNNNNTGG 2 cut(s) 370, 458
PkrI GCNGC 8 cut(s) 67, 213, 216, 219, 281, 481, 753, 756
PleI GAGTC 1 cut(s) 903
PpsI GAGTC 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 940
PspFI CCCAGC 1 cut(s) 983
PspN4I GGNNCC 2 cut(s) 571, 720
PspPI GGNCC 4 cut(s) 461, 570, 595, 718
PsuI RGATCY 2 cut(s) 520, 964
PteI GCGCGC 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 754
RsaI GTAC 3 cut(s) 36, 358, 1017
RsaNI GTAC 3 cut(s) 35, 357, 1016
RseI CAYNNNNRTG 4 cut(s) 272, 659, 665, 878
SacI GAGCTC 1 cut(s) 940
SalI GTCGAC 1 cut(s) 333
SaqAI TTAA 5 cut(s) 383, 426, 824, 855, 1045
SatI GCNGC 8 cut(s) 66, 212, 215, 218, 280, 480, 752, 755
Sau3AI GATC 5 cut(s) 70, 520, 606, 964, 1000
Sau96I GGNCC 4 cut(s) 461, 570, 595, 718
SchI GAGTC 1 cut(s) 904
SduI GDGCHC 2 cut(s) 940, 1034
SfaNI GCATC 5 cut(s) 136, 264, 625, 634, 663
SfuI TTCGAA 1 cut(s) 170
SinI GGWCC 3 cut(s) 570, 595, 718
SmiMI CAYNNNNRTG 4 cut(s) 272, 659, 665, 878
Sse9I AATT 8 cut(s) 232, 304, 325, 384, 418, 629, 821, 902
SsiI CCGC 5 cut(s) 211, 214, 217, 279, 638
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 940
StyI CCWWGG 1 cut(s) 457
TaaI ACNGT 2 cut(s) 396, 842
TaiI ACGT 1 cut(s) 619
TaqI TCGA 4 cut(s) 83, 170, 334, 613
TasI AATT 8 cut(s) 232, 304, 325, 384, 418, 629, 821, 902
TatI WGTACW 2 cut(s) 34, 1015
TauI GCSGC 4 cut(s) 214, 217, 220, 282
TfiI GAWTC 5 cut(s) 19, 40, 164, 766, 800
Tru1I TTAA 5 cut(s) 383, 426, 824, 855, 1045
Tru9I TTAA 5 cut(s) 383, 426, 824, 855, 1045
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 4 cut(s) 65, 479, 751, 754
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 4 cut(s) 185, 642, 960, 979
TspGWI ACGGA 2 cut(s) 553, 731
Van91I CCANNNNNTGG 2 cut(s) 370, 458
VpaK11BI GGWCC 3 cut(s) 570, 595, 718
XapI RAATTY 2 cut(s) 325, 902
XceI RCATGY 2 cut(s) 434, 664
XmiI GTMKAC 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.