Rh5BG562600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000990
Physical Location & Seq
Reverse (-)
89164166 .. 89164656
491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG562600.1

Sequence Viewer

Length: 408 bp
ATGGCTAGATGGGATGAGATTCTGTCTCTTCCTGTACAGAATCCTCCAACTTTGGAGTTTTCTGCTGCTGATCTTGCGTGGTCGAAGGTGAAAGGTTGGTGTGACAAGAAAGATAGAGTTGCTTTAATCCCCTATGCCAGAGTTGATGCTTTTGTGAGGGGTGAATCTTCGAACAAAGAGTGTCCGACGAGATTTCATGTTGAAGCGAGGCGGCGGCGGCAGGCAAAGACGAATTGCAAACCAAAGGTTGATGGCATCCTTGAATACATTCTATATTGGTGTTCTTTTGTCCTGATGACCACAGGATGGGCGGCTCTATACGACCCAGTAGGACTAATTATGTCCCAAAGAAGAAAAATTCTGGTCGACCAAACACCAAGAGAGGTTGTACCTGCCACTTTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.58

Weight (kDa)

9.32

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AccB7I CCANNNNNTGG 2 cut(s) 306, 402
AccI GTMKAC 1 cut(s) 366
AciI CCGC 4 cut(s) 211, 214, 217, 311
AcsI RAATTY 1 cut(s) 357
AfaI GTAC 2 cut(s) 36, 390
AfiI CCNNNNNNNGG 2 cut(s) 306, 402
AgsI TTSAA 2 cut(s) 203, 263
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 100, 173
AsuII TTCGAA 1 cut(s) 170
BbvI GCAGC 1 cut(s) 52
BccI CCATC 3 cut(s) 3, 245, 300
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 6
BfuAI ACCTGC 1 cut(s) 400
BisI GCNGC 5 cut(s) 66, 212, 215, 218, 312
BlsI GCNGC 5 cut(s) 67, 213, 216, 219, 313
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 2 cut(s) 136, 264
BmuI ACTGGG 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 402
Bse1I ACTGG 1 cut(s) 326
BseGI GGATG 3 cut(s) 19, 255, 311
BseLI CCNNNNNNNGG 2 cut(s) 306, 402
BseNI ACTGG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 52
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 306, 402
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 328
Bsp119I TTCGAA 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 4 cut(s) 211, 214, 217, 311
BspMI ACCTGC 1 cut(s) 400
BspT104I TTCGAA 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 34
BsrI ACTGG 1 cut(s) 326
BssMI GATC 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 222
BstF5I GGATG 3 cut(s) 19, 255, 311
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 74, 217
BstV1I GCAGC 1 cut(s) 52
BtsCI GGATG 3 cut(s) 19, 255, 311
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 35, 389
CviAII CATG 1 cut(s) 197
CviJI RGCY 2 cut(s) 5, 314
CviKI_1 RGCY 2 cut(s) 5, 314
CviQI GTAC 2 cut(s) 35, 389
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
FaeI CATG 1 cut(s) 200
FaiI YATR 6 cut(s) 135, 198, 274, 319, 341, 403
FaqI GGGAC 1 cut(s) 328
FatI CATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 5 cut(s) 66, 212, 215, 218, 312
FokI GGATG 3 cut(s) 26, 242, 318
Fsp4HI GCNGC 5 cut(s) 66, 212, 215, 218, 312
FspBI CTAG 1 cut(s) 6
GluI GCNGC 5 cut(s) 66, 212, 215, 218, 312
Hin1II CATG 1 cut(s) 200
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 3 cut(s) 19, 40, 164
HphI GGTGA 2 cut(s) 100, 173
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 292
Hpy8I GTNNAC 1 cut(s) 367
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 217
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 7 cut(s) 45, 151, 206, 288, 305, 339, 347
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 2 cut(s) 136, 264
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 3 cut(s) 20, 159, 363
MluCI AATT 3 cut(s) 232, 336, 357
MmeI TCCRAC 2 cut(s) 71, 209
MnlI CCTC 4 cut(s) 54, 150, 201, 376
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 74, 217
NdeII GATC 1 cut(s) 70
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 101
NspV TTCGAA 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 3 cut(s) 19, 40, 164
PflMI CCANNNNNTGG 2 cut(s) 306, 402
PkrI GCNGC 5 cut(s) 67, 213, 216, 219, 313
RsaI GTAC 2 cut(s) 36, 390
RsaNI GTAC 2 cut(s) 35, 389
SalI GTCGAC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 5 cut(s) 66, 212, 215, 218, 312
Sau3AI GATC 1 cut(s) 70
SetI ASST 5 cut(s) 90, 97, 249, 387, 394
SfaNI GCATC 2 cut(s) 136, 264
SfuI TTCGAA 1 cut(s) 170
Sse9I AATT 3 cut(s) 232, 336, 357
SsiI CCGC 4 cut(s) 211, 214, 217, 311
SspMI CTAG 1 cut(s) 6
TaqI TCGA 3 cut(s) 83, 170, 366
TasI AATT 3 cut(s) 232, 336, 357
TatI WGTACW 1 cut(s) 34
TauI GCSGC 4 cut(s) 214, 217, 220, 314
TfiI GAWTC 3 cut(s) 19, 40, 164
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 185
Van91I CCANNNNNTGG 2 cut(s) 306, 402
XapI RAATTY 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.