Rmu_sc0002245.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002245.1
OG0000990
Physical Location & Seq
Forward (+)
101727 .. 104305
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002245.1_g000026.1.cds

Sequence Viewer

Length: 1110 bp
atgttacaatggcccgtttttgctcatcaggcccctgatttttcttgcgaaaaatttggaagagggtacatcgtagctgtcgtacgacccagtaggactaattatgtcccaaagaagaaaaattatggtcgaccaaacaccaagagaggttgtacctgccactttatggtgaaacgcttaattgctgaaccgtcagtagcgcttcttgtatataattctgttaagcatgtggataagaaaggactgtcatgccatggcccagaagataagatggctgctggaacacgcgctatgtttgccccatacatctttgaggatctacgccttcgtgtgctatctttgctatatgtcggggtctccgtggagaccataatgcagagacacactgaatccgtagagagacagggtggtccatttaatcgtgatgaccccttaacccataggtatgttcgcagacaggagaggatcattcgacgttctacatatgaattggatgcggatgatgcagttagcatcggcatgtgggtggaaaaccatcagaatagcattttcttctatgaggatttctccgagacggaccctttcactttgggcattcaaacagactggcagctgcaacagatgattcgctttggcaatcacagccttatagcctctgatccaaggttcggaacaaacaaattaaagtatcctgttcacagtctccttgtatttaaccaggacaacaaggccattccgacgaaagatacttcatggaagttggctggcttcatagtggatgatcctcaggctgatgtacactctatcagaaatcgtacttcagattccccgacgcctcatccgtcatcgtttcaaggacaaaaagaccctagcgtcttcttcttcttcctcgtaccgccgcctcaggcgccgcttctgaaaaaagagaacgctccgtcgcctaggcgacgcttttccagcagcacgcgtcattttgatcaagcgaggcaatttccggtcgcctcacaccggagcgcgcctgacaagacccgccccgaattccacccaggaatccgaagtggccctgcgggacccacctttaaaggagatttaccaaaaatttcggcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

42.06

Weight (kDa)

9.65

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 408, 872
Acc36I ACCTGC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 907
AccB7I CCANNNNNTGG 1 cut(s) 166
AccI GTMKAC 1 cut(s) 130
AccII CGCG 3 cut(s) 288, 967, 1016
AciI CCGC 6 cut(s) 497, 896, 899, 911, 1030, 1067
AclWI GGATC 4 cut(s) 324, 473, 653, 776
AcsI RAATTY 3 cut(s) 53, 1037, 1098
AcuI CTGAAG 1 cut(s) 804
AcyI GRCGYC 2 cut(s) 833, 908
AfaI GTAC 6 cut(s) 68, 84, 154, 798, 817, 894
AfeI AGCGCT 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 166, 668, 1008
AflIII ACRYGT 1 cut(s) 965
AgsI TTSAA 2 cut(s) 599, 854
AjnI CCWGG 2 cut(s) 717, 1045
AluBI AGCT 2 cut(s) 77, 613
AluI AGCT 2 cut(s) 77, 613
Alw26I GTCTC 6 cut(s) 359, 361, 373, 394, 566, 707
AlwI GGATC 4 cut(s) 324, 473, 653, 776
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 5 cut(s) 11, 30, 256, 729, 1060
ApeKI GCWGC 4 cut(s) 275, 610, 613, 960
ApoI RAATTY 3 cut(s) 53, 1037, 1098
AspA2I CCTAGG 1 cut(s) 941
AspLEI GCGC 5 cut(s) 202, 290, 910, 1016, 1018
AspS9I GGNCC 7 cut(s) 12, 31, 257, 410, 577, 1061, 1070
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 3 cut(s) 410, 577, 1070
AvrII CCTAGG 1 cut(s) 941
AxyI CCTNAGG 2 cut(s) 786, 903
BanI GGYRCC 1 cut(s) 907
BbsI GAAGAC 1 cut(s) 868
BbvI GCAGC 4 cut(s) 262, 600, 622, 972
BccI CCATC 2 cut(s) 265, 543
BciT130I CCWGG 2 cut(s) 719, 1047
BciVI GTATCC 1 cut(s) 699
BclI TGATCA 1 cut(s) 976
BcoDI GTCTC 6 cut(s) 359, 361, 373, 394, 566, 707
BfaI CTAG 2 cut(s) 870, 942
BfoI RGCGCY 2 cut(s) 203, 911
BfuAI ACCTGC 1 cut(s) 164
BfuI GTATCC 1 cut(s) 699
BisI GCNGC 6 cut(s) 276, 611, 614, 899, 911, 961
BlnI CCTAGG 1 cut(s) 941
BlsI GCNGC 6 cut(s) 277, 612, 615, 900, 912, 962
Bme1390I CCNGG 2 cut(s) 719, 1047
Bme18I GGWCC 3 cut(s) 410, 577, 1070
BmgT120I GGNCC 7 cut(s) 12, 31, 257, 410, 577, 1061, 1070
BmiI GGNNCC 5 cut(s) 33, 579, 909, 1071, 1072
BmrFI CCNGG 2 cut(s) 719, 1047
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 3 cut(s) 484, 493, 522
BmuI ACTGGG 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 868
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BsaHI GRCGYC 2 cut(s) 833, 908
BsaI GGTCTC 2 cut(s) 359, 361
BsaJI CCNNGG 5 cut(s) 253, 360, 662, 941, 1045
BsaWI WCCGGW 2 cut(s) 994, 1008
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 668, 1008
Bse1I ACTGG 2 cut(s) 90, 611
Bse21I CCTNAGG 2 cut(s) 786, 903
BseBI CCWGG 2 cut(s) 719, 1047
BseDI CCNNGG 5 cut(s) 253, 360, 662, 941, 1045
BseGI GGATG 4 cut(s) 499, 505, 784, 838
BseLI CCNNNNNNNGG 3 cut(s) 166, 668, 1008
BseMII CTCAG 2 cut(s) 800, 917
BseNI ACTGG 2 cut(s) 90, 611
BsePI GCGCGC 1 cut(s) 1014
BseXI GCAGC 4 cut(s) 262, 600, 622, 972
Bsh1236I CGCG 3 cut(s) 288, 967, 1016
Bsh1285I CGRYCG 1 cut(s) 999
BshFI GGCC 5 cut(s) 13, 32, 258, 731, 1062
BshNI GGYRCC 1 cut(s) 907
BsiEI CGRYCG 1 cut(s) 999
BsiSI CCGG 2 cut(s) 995, 1009
BsiWI CGTACG 1 cut(s) 82
BslFI GGGAC 2 cut(s) 92, 1083
BslI CCNNNNNNNGG 3 cut(s) 166, 668, 1008
BsmAI GTCTC 6 cut(s) 359, 361, 373, 394, 566, 707
BsmBI CGTCTC 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 92, 1083
BsmI GAATGC 1 cut(s) 594
BsnI GGCC 5 cut(s) 13, 32, 258, 731, 1062
Bso31I GGTCTC 2 cut(s) 359, 361
Bsp1407I TGTACA 1 cut(s) 796
Bsp143I GATC 5 cut(s) 316, 465, 658, 781, 976
Bsp19I CCATGG 1 cut(s) 253
BspACI CCGC 6 cut(s) 497, 896, 899, 911, 1030, 1067
BspANI GGCC 5 cut(s) 13, 32, 258, 731, 1062
BspCNI CTCAG 2 cut(s) 799, 916
BspFNI CGCG 3 cut(s) 288, 967, 1016
BspLI GGNNCC 5 cut(s) 33, 579, 909, 1071, 1072
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 4 cut(s) 324, 473, 653, 776
BspT107I GGYRCC 1 cut(s) 907
BspTNI GGTCTC 2 cut(s) 359, 361
BsrGI TGTACA 1 cut(s) 796
BsrI ACTGG 2 cut(s) 90, 611
BssECI CCNNGG 5 cut(s) 253, 360, 662, 941, 1045
BssHII GCGCGC 1 cut(s) 1014
BssMI GATC 5 cut(s) 316, 465, 658, 781, 976
BssNI GRCGYC 2 cut(s) 833, 908
BssT1I CCWWGG 3 cut(s) 253, 662, 941
Bst2UI CCWGG 2 cut(s) 719, 1047
Bst4CI ACNGT 3 cut(s) 192, 246, 701
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 2 cut(s) 833, 908
BstAUI TGTACA 1 cut(s) 796
BstC8I GCNNGC 3 cut(s) 766, 965, 1016
BstDEI CTNAG 2 cut(s) 786, 903
BstDSI CCRYGG 2 cut(s) 253, 360
BstF5I GGATG 4 cut(s) 499, 505, 784, 838
BstFNI CGCG 3 cut(s) 288, 967, 1016
BstH2I RGCGCY 2 cut(s) 203, 911
BstHHI GCGC 5 cut(s) 202, 290, 910, 1016, 1018
BstKTI GATC 5 cut(s) 319, 468, 661, 784, 979
BstMAI GTCTC 6 cut(s) 359, 361, 373, 394, 566, 707
BstMBI GATC 5 cut(s) 316, 465, 658, 781, 976
BstMCI CGRYCG 1 cut(s) 999
BstMWI GCNNNNNNNGC 7 cut(s) 29, 296, 340, 503, 642, 907, 957
BstNI CCWGG 2 cut(s) 719, 1047
BstNSI RCATGY 2 cut(s) 230, 523
BstSCI CCNGG 2 cut(s) 717, 1045
BstUI CGCG 3 cut(s) 288, 967, 1016
BstV1I GCAGC 4 cut(s) 262, 600, 622, 972
BstV2I GAAGAC 1 cut(s) 868
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
Bsu36I CCTNAGG 2 cut(s) 786, 903
BsuI GTATCC 1 cut(s) 699
BsuRI GGCC 5 cut(s) 13, 32, 258, 731, 1062
BtgI CCRYGG 2 cut(s) 253, 360
BtsCI GGATG 4 cut(s) 499, 505, 784, 838
BtsIMutI CAGTG 1 cut(s) 384
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 3 cut(s) 766, 965, 1016
CfoI GCGC 5 cut(s) 202, 290, 910, 1016, 1018
Cfr13I GGNCC 7 cut(s) 12, 31, 257, 410, 577, 1061, 1070
CseI GACGC 4 cut(s) 841, 862, 956, 957
Csp6I GTAC 6 cut(s) 67, 83, 153, 797, 816, 893
CviAII CATG 5 cut(s) 227, 249, 254, 520, 753
CviQI GTAC 6 cut(s) 67, 83, 153, 797, 816, 893
DdeI CTNAG 2 cut(s) 786, 903
DinI GGCGCC 1 cut(s) 909
DpnI GATC 5 cut(s) 318, 467, 660, 783, 978
DpnII GATC 5 cut(s) 316, 465, 658, 781, 976
DraI TTTAAA 1 cut(s) 1081
DrdI GACNNNNNNGTC 2 cut(s) 408, 872
DseDI GACNNNNNNGTC 2 cut(s) 408, 872
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Eco130I CCWWGG 3 cut(s) 253, 662, 941
Eco31I GGTCTC 2 cut(s) 359, 361
Eco47I GGWCC 3 cut(s) 410, 577, 1070
Eco47III AGCGCT 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 804
Eco81I CCTNAGG 2 cut(s) 786, 903
EcoO109I RGGNCCY 2 cut(s) 31, 1070
EcoRI GAATTC 1 cut(s) 1037
EcoRII CCWGG 2 cut(s) 717, 1045
EcoT14I CCWWGG 3 cut(s) 253, 662, 941
EgeI GGCGCC 1 cut(s) 909
EheI GGCGCC 1 cut(s) 909
ErhI CCWWGG 3 cut(s) 253, 662, 941
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 5 cut(s) 230, 252, 257, 523, 756
FaqI GGGAC 2 cut(s) 92, 1083
FatI CATG 5 cut(s) 226, 248, 253, 519, 752
FauI CCCGC 2 cut(s) 1037, 1060
FauNDI CATATG 1 cut(s) 484
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 6 cut(s) 276, 611, 614, 899, 911, 961
FokI GGATG 4 cut(s) 506, 512, 791, 825
Fsp4HI GCNGC 6 cut(s) 276, 611, 614, 899, 911, 961
FspBI CTAG 2 cut(s) 870, 942
GlaI GCGC 5 cut(s) 201, 289, 909, 1015, 1017
GluI GCNGC 6 cut(s) 276, 611, 614, 899, 911, 961
HaeII RGCGCY 2 cut(s) 203, 911
HaeIII GGCC 5 cut(s) 13, 32, 258, 731, 1062
HapII CCGG 2 cut(s) 995, 1009
HgaI GACGC 4 cut(s) 841, 862, 956, 957
HhaI GCGC 5 cut(s) 202, 290, 910, 1016, 1018
Hin1I GRCGYC 2 cut(s) 833, 908
Hin1II CATG 5 cut(s) 230, 252, 257, 523, 756
Hin6I GCGC 5 cut(s) 200, 288, 908, 1014, 1016
HinP1I GCGC 5 cut(s) 200, 288, 908, 1014, 1016
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 4 cut(s) 389, 625, 824, 1050
HpaII CCGG 2 cut(s) 995, 1009
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 131, 697, 799
Hpy188I TCNGA 9 cut(s) 540, 571, 658, 671, 738, 809, 823, 918, 1055
Hpy188III TCNNGA 1 cut(s) 422
Hpy8I GTNNAC 3 cut(s) 131, 697, 799
Hpy99I CGWCG 5 cut(s) 477, 742, 835, 940, 951
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 3 cut(s) 192, 246, 701
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 3 cut(s) 376, 506, 616
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 296, 340, 503, 642, 907, 957
HpyF3I CTNAG 2 cut(s) 786, 903
HpySE526I ACGT 1 cut(s) 475
Hsp92I GRCGYC 2 cut(s) 833, 908
Hsp92II CATG 5 cut(s) 230, 252, 257, 523, 756
HspAI GCGC 5 cut(s) 200, 288, 908, 1014, 1016
KasI GGCGCC 1 cut(s) 907
KflI GGGWCCC 1 cut(s) 1070
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 5 cut(s) 316, 465, 658, 781, 976
LmnI GCTCC 2 cut(s) 937, 1011
Lsp1109I GCAGC 4 cut(s) 262, 600, 622, 972
LweI GCATC 3 cut(s) 484, 493, 522
MaeI CTAG 2 cut(s) 870, 942
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 1 cut(s) 3
MalI GATC 5 cut(s) 318, 467, 660, 783, 978
MboI GATC 5 cut(s) 316, 465, 658, 781, 976
MboII GAAGA 8 cut(s) 72, 127, 275, 544, 868, 871, 874, 877
MflI RGATCY 1 cut(s) 316
MluI ACGCGT 1 cut(s) 965
Mly113I GGCGCC 1 cut(s) 908
MmeI TCCRAC 1 cut(s) 761
MseI TTAA 7 cut(s) 179, 222, 417, 434, 683, 714, 1080
MslI CAYNNNNRTG 3 cut(s) 444, 518, 524
MspA1I CMGCKG 1 cut(s) 613
MspI CCGG 2 cut(s) 995, 1009
MspR9I CCNGG 2 cut(s) 719, 1047
Mva1269I GAATGC 1 cut(s) 594
MvaI CCWGG 2 cut(s) 719, 1047
MvnI CGCG 3 cut(s) 288, 967, 1016
MwoI GCNNNNNNNGC 7 cut(s) 29, 296, 340, 503, 642, 907, 957
NarI GGCGCC 1 cut(s) 908
NcoI CCATGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 484
NdeII GATC 5 cut(s) 316, 465, 658, 781, 976
NlaIII CATG 5 cut(s) 230, 252, 257, 523, 756
NlaIV GGNNCC 5 cut(s) 33, 579, 909, 1071, 1072
NspI RCATGY 2 cut(s) 230, 523
PauI GCGCGC 1 cut(s) 1014
PcsI WCGNNNNNNNCGW 3 cut(s) 78, 357, 839
PctI GAATGC 1 cut(s) 594
PfeI GAWTC 4 cut(s) 389, 625, 824, 1050
Pfl23II CGTACG 1 cut(s) 82
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 6 cut(s) 277, 612, 615, 900, 912, 962
PluTI GGCGCC 1 cut(s) 911
PpuMI RGGWCCY 1 cut(s) 1070
Psp5II RGGWCCY 1 cut(s) 1070
Psp6I CCWGG 2 cut(s) 717, 1045
PspGI CCWGG 2 cut(s) 717, 1045
PspLI CGTACG 1 cut(s) 82
PspN4I GGNNCC 5 cut(s) 33, 579, 909, 1071, 1072
PspPI GGNCC 7 cut(s) 12, 31, 257, 410, 577, 1061, 1070
PspPPI RGGWCCY 1 cut(s) 1070
PsuI RGATCY 1 cut(s) 316
PteI GCGCGC 1 cut(s) 1014
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 6 cut(s) 68, 84, 154, 798, 817, 894
RsaNI GTAC 6 cut(s) 67, 83, 153, 797, 816, 893
RseI CAYNNNNRTG 3 cut(s) 444, 518, 524
SalI GTCGAC 1 cut(s) 129
SaqAI TTAA 7 cut(s) 179, 222, 417, 434, 683, 714, 1080
SatI GCNGC 6 cut(s) 276, 611, 614, 899, 911, 961
Sau3AI GATC 5 cut(s) 316, 465, 658, 781, 976
Sau96I GGNCC 7 cut(s) 12, 31, 257, 410, 577, 1061, 1070
ScrFI CCNGG 2 cut(s) 719, 1047
SetI ASST 8 cut(s) 79, 151, 158, 446, 478, 615, 668, 1079
SfaNI GCATC 3 cut(s) 484, 493, 522
SfoI GGCGCC 1 cut(s) 909
SinI GGWCC 3 cut(s) 410, 577, 1070
SmiMI CAYNNNNRTG 3 cut(s) 444, 518, 524
SsiI CCGC 6 cut(s) 497, 896, 899, 911, 1030, 1067
SspDI GGCGCC 1 cut(s) 907
SspMI CTAG 2 cut(s) 870, 942
StyD4I CCNGG 2 cut(s) 717, 1045
StyI CCWWGG 3 cut(s) 253, 662, 941
TaaI ACNGT 3 cut(s) 192, 246, 701
TaiI ACGT 1 cut(s) 478
TaqI TCGA 2 cut(s) 130, 472
TatI WGTACW 1 cut(s) 796
TauI GCSGC 2 cut(s) 901, 913
TfiI GAWTC 4 cut(s) 389, 625, 824, 1050
Tru1I TTAA 7 cut(s) 179, 222, 417, 434, 683, 714, 1080
Tru9I TTAA 7 cut(s) 179, 222, 417, 434, 683, 714, 1080
TscAI CASTG 1 cut(s) 391
TseI GCWGC 4 cut(s) 275, 610, 613, 960
TspDTI ATGAA 3 cut(s) 501, 741, 760
TspGWI ACGGA 5 cut(s) 349, 382, 590, 831, 924
TspRI CASTG 1 cut(s) 391
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 3 cut(s) 410, 577, 1070
XapI RAATTY 3 cut(s) 53, 1037, 1098
XceI RCATGY 2 cut(s) 230, 523
XmaJI CCTAGG 1 cut(s) 941
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 2 cut(s) 870, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.