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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2254 |
| Acc36I | ACCTGC | 1 cut(s) | 400 |
| Acc65I | GGTACC | 2 cut(s) | 1127, 2059 |
| AccB1I | GGYRCC | 3 cut(s) | 1127, 2059, 2729 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 306, 402 |
| AccI | GTMKAC | 2 cut(s) | 366, 1092 |
| AccIII | TCCGGA | 1 cut(s) | 2326 |
| AciI | CCGC | 9 cut(s) | 211, 214, 217, 311, 458, 850, 899, 1535, 1685 |
| AclWI | GGATC | 8 cut(s) | 434, 743, 779, 1602, 1922, 1997, 2010, 2752 |
| AcsI | RAATTY | 3 cut(s) | 357, 686, 1037 |
| AcuI | CTGAAG | 3 cut(s) | 1926, 2169, 2391 |
| AcvI | CACGTG | 1 cut(s) | 1277 |
| AfaI | GTAC | 9 cut(s) | 36, 390, 801, 1129, 1273, 1545, 1999, 2061, 2582 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 306, 402, 711, 971, 1149 |
| AflIII | ACRYGT | 2 cut(s) | 1022, 1274 |
| AjnI | CCWGG | 5 cut(s) | 956, 1014, 1330, 1464, 1822 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1318, 1350 |
| Alw21I | GWGCWC | 1 cut(s) | 724 |
| Alw26I | GTCTC | 3 cut(s) | 30, 527, 632 |
| AlwI | GGATC | 8 cut(s) | 434, 743, 779, 1602, 1922, 1997, 2010, 2752 |
| Ama87I | CYCGRG | 1 cut(s) | 2812 |
| Aor13HI | TCCGGA | 1 cut(s) | 2326 |
| AoxI | GGCC | 3 cut(s) | 654, 1467, 1639 |
| ApaI | GGGCCC | 1 cut(s) | 1643 |
| ApeKI | GCWGC | 7 cut(s) | 65, 571, 574, 1028, 1578, 1601, 2635 |
| ApoI | RAATTY | 3 cut(s) | 357, 686, 1037 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 267, 999 |
| Asp718I | GGTACC | 2 cut(s) | 1127, 2059 |
| AspLEI | GCGC | 1 cut(s) | 2255 |
| AspS9I | GGNCC | 5 cut(s) | 538, 1562, 1639, 1640, 1884 |
| AsuHPI | GGTGA | 5 cut(s) | 100, 173, 1219, 2684, 2767 |
| AsuII | TTCGAA | 2 cut(s) | 170, 2111 |
| AsuNHI | GCTAGC | 1 cut(s) | 1010 |
| AvaI | CYCGRG | 1 cut(s) | 2812 |
| AvaII | GGWCC | 3 cut(s) | 538, 1562, 1884 |
| AxyI | CCTNAGG | 1 cut(s) | 789 |
| BaeGI | GKGCMC | 1 cut(s) | 1643 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1119, 1152 |
| BamHI | GGATCC | 1 cut(s) | 2002 |
| BanI | GGYRCC | 3 cut(s) | 1127, 2059, 2729 |
| BanII | GRGCYC | 2 cut(s) | 724, 1643 |
| BbrPI | CACGTG | 1 cut(s) | 1277 |
| BbsI | GAAGAC | 1 cut(s) | 992 |
| Bbv12I | GWGCWC | 1 cut(s) | 724 |
| BbvI | GCAGC | 7 cut(s) | 52, 561, 583, 1040, 1590, 1613, 2622 |
| BceAI | ACGGC | 1 cut(s) | 2521 |
| BciT130I | CCWGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| BciVI | GTATCC | 1 cut(s) | 972 |
| BclI | TGATCA | 2 cut(s) | 1300, 1516 |
| BcoDI | GTCTC | 3 cut(s) | 30, 527, 632 |
| BfaI | CTAG | 5 cut(s) | 6, 1011, 1622, 1724, 1854 |
| BfmI | CTRYAG | 2 cut(s) | 1357, 1414 |
| BfuAI | ACCTGC | 1 cut(s) | 400 |
| BfuI | GTATCC | 1 cut(s) | 972 |
| BglII | AGATCT | 3 cut(s) | 1618, 1909, 2321 |
| Bme1390I | CCNGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| Bme18I | GGWCC | 3 cut(s) | 538, 1562, 1884 |
| BmeT110I | CYCGRG | 1 cut(s) | 2812 |
| BmgT120I | GGNCC | 5 cut(s) | 538, 1562, 1639, 1640, 1884 |
| BmiI | GGNNCC | 8 cut(s) | 540, 1129, 1328, 1379, 1641, 2004, 2061, 2731 |
| BmrFI | CCNGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| BmrI | ACTGGG | 4 cut(s) | 320, 1080, 1637, 2673 |
| BmsI | GCATC | 8 cut(s) | 136, 264, 445, 454, 483, 913, 935, 2366 |
| BmtI | GCTAGC | 1 cut(s) | 1014 |
| BmuI | ACTGGG | 4 cut(s) | 320, 1080, 1637, 2673 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1882 |
| BpiI | GAAGAC | 1 cut(s) | 992 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 512, 544 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1061 |
| Bpu14I | TTCGAA | 2 cut(s) | 170, 2111 |
| BpuEI | CTTGAG | 3 cut(s) | 1040, 1382, 2582 |
| Bsa29I | ATCGAT | 1 cut(s) | 2292 |
| BsaAI | YACGTR | 1 cut(s) | 1277 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1617 |
| BsaJI | CCNNGG | 3 cut(s) | 1330, 1823, 2499 |
| BsaWI | WCCGGW | 2 cut(s) | 661, 2326 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2132, 2162 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 306, 402, 711, 971, 1149 |
| Bse1I | ACTGG | 8 cut(s) | 326, 572, 1086, 1196, 1552, 1643, 2668, 2768 |
| Bse21I | CCTNAGG | 1 cut(s) | 789 |
| Bse3DI | GCAATG | 6 cut(s) | 1038, 1486, 2057, 2248, 2572, 2591 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1617 |
| BseAI | TCCGGA | 1 cut(s) | 2326 |
| BseBI | CCWGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| BseCI | ATCGAT | 1 cut(s) | 2292 |
| BseDI | CCNNGG | 3 cut(s) | 1330, 1823, 2499 |
| BseJI | GATNNNNATC | 1 cut(s) | 1617 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 306, 402, 711, 971, 1149 |
| BseMI | GCAATG | 6 cut(s) | 1038, 1486, 2057, 2248, 2572, 2591 |
| BseMII | CTCAG | 7 cut(s) | 803, 843, 1158, 1773, 1881, 2544, 2598 |
| BseNI | ACTGG | 8 cut(s) | 326, 572, 1086, 1196, 1552, 1643, 2668, 2768 |
| BseSI | GKGCMC | 1 cut(s) | 1643 |
| BseXI | GCAGC | 7 cut(s) | 52, 561, 583, 1040, 1590, 1613, 2622 |
| BseYI | CCCAGC | 2 cut(s) | 767, 1123 |
| BsgI | GTGCAG | 1 cut(s) | 1047 |
| BshFI | GGCC | 3 cut(s) | 656, 1469, 1641 |
| BshNI | GGYRCC | 3 cut(s) | 1127, 2059, 2729 |
| BshVI | ATCGAT | 1 cut(s) | 2292 |
| BsiHKAI | GWGCWC | 1 cut(s) | 724 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2812 |
| BsiSI | CCGG | 2 cut(s) | 662, 2327 |
| BslFI | GGGAC | 1 cut(s) | 328 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 306, 402, 711, 971, 1149 |
| BsmAI | GTCTC | 3 cut(s) | 30, 527, 632 |
| BsmBI | CGTCTC | 1 cut(s) | 527 |
| BsmFI | GGGAC | 1 cut(s) | 328 |
| BsmI | GAATGC | 3 cut(s) | 555, 1138, 2508 |
| BsnI | GGCC | 3 cut(s) | 656, 1469, 1641 |
| BsoBI | CYCGRG | 1 cut(s) | 2812 |
| Bsp119I | TTCGAA | 2 cut(s) | 170, 2111 |
| Bsp120I | GGGCCC | 1 cut(s) | 1639 |
| Bsp1286I | GDGCHC | 2 cut(s) | 724, 1643 |
| Bsp13I | TCCGGA | 1 cut(s) | 2326 |
| Bsp1407I | TGTACA | 3 cut(s) | 34, 799, 1543 |
| BspACI | CCGC | 9 cut(s) | 211, 214, 217, 311, 458, 850, 899, 1535, 1685 |
| BspANI | GGCC | 3 cut(s) | 656, 1469, 1641 |
| BspCNI | CTCAG | 7 cut(s) | 802, 842, 1159, 1774, 1880, 2545, 2597 |
| BspDI | ATCGAT | 1 cut(s) | 2292 |
| BspEI | TCCGGA | 1 cut(s) | 2326 |
| BspHI | TCATGA | 2 cut(s) | 1498, 2170 |
| BspLI | GGNNCC | 8 cut(s) | 540, 1129, 1328, 1379, 1641, 2004, 2061, 2731 |
| BspMAI | CTGCAG | 2 cut(s) | 1361, 1418 |
| BspMI | ACCTGC | 1 cut(s) | 400 |
| BspOI | GCTAGC | 1 cut(s) | 1014 |
| BspPI | GGATC | 8 cut(s) | 434, 743, 779, 1602, 1922, 1997, 2010, 2752 |
| BspQI | GCTCTTC | 1 cut(s) | 2625 |
| BspT104I | TTCGAA | 2 cut(s) | 170, 2111 |
| BspT107I | GGYRCC | 3 cut(s) | 1127, 2059, 2729 |
| BsrDI | GCAATG | 6 cut(s) | 1038, 1486, 2057, 2248, 2572, 2591 |
| BsrGI | TGTACA | 3 cut(s) | 34, 799, 1543 |
| BsrI | ACTGG | 8 cut(s) | 326, 572, 1086, 1196, 1552, 1643, 2668, 2768 |
| BssECI | CCNNGG | 3 cut(s) | 1330, 1823, 2499 |
| BssT1I | CCWWGG | 1 cut(s) | 2499 |
| Bst2UI | CCWGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| Bst4CI | ACNGT | 7 cut(s) | 1214, 2059, 2104, 2134, 2273, 2308, 2338 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 2625 |
| BstAUI | TGTACA | 3 cut(s) | 34, 799, 1543 |
| BstBAI | YACGTR | 1 cut(s) | 1277 |
| BstBI | TTCGAA | 2 cut(s) | 170, 2111 |
| BstC8I | GCNNGC | 4 cut(s) | 222, 852, 1012, 2468 |
| BstDEI | CTNAG | 8 cut(s) | 789, 829, 1061, 1167, 1782, 1867, 2553, 2584 |
| BstHHI | GCGC | 1 cut(s) | 2255 |
| BstMAI | GTCTC | 3 cut(s) | 30, 527, 632 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 74, 217, 464, 603, 1480, 1584, 1607, 1706 |
| BstNI | CCWGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| BstNSI | RCATGY | 4 cut(s) | 484, 1026, 1697, 1734 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1882 |
| BstSCI | CCNGG | 5 cut(s) | 956, 1014, 1330, 1464, 1822 |
| BstSFI | CTRYAG | 2 cut(s) | 1357, 1414 |
| BstSLI | GKGCMC | 1 cut(s) | 1643 |
| BstV1I | GCAGC | 7 cut(s) | 52, 561, 583, 1040, 1590, 1613, 2622 |
| BstV2I | GAAGAC | 1 cut(s) | 992 |
| BstX2I | RGATCY | 5 cut(s) | 748, 1618, 1909, 2002, 2321 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1559 |
| BstYI | RGATCY | 5 cut(s) | 748, 1618, 1909, 2002, 2321 |
| Bsu15I | ATCGAT | 1 cut(s) | 2292 |
| Bsu36I | CCTNAGG | 1 cut(s) | 789 |
| BsuI | GTATCC | 1 cut(s) | 972 |
| BsuRI | GGCC | 3 cut(s) | 656, 1469, 1641 |
| BsuTUI | ATCGAT | 1 cut(s) | 2292 |
| BtgZI | GCGATG | 1 cut(s) | 2585 |
| BtsI | GCAGTG | 1 cut(s) | 823 |
| BtsIMutI | CAGTG | 6 cut(s) | 823, 837, 1093, 2100, 2691, 2782 |
| BveI | ACCTGC | 1 cut(s) | 400 |
| Cac8I | GCNNGC | 4 cut(s) | 222, 852, 1012, 2468 |
| CciI | TCATGA | 2 cut(s) | 1498, 2170 |
| CfoI | GCGC | 1 cut(s) | 2255 |
| Cfr13I | GGNCC | 5 cut(s) | 538, 1562, 1639, 1640, 1884 |
| ClaI | ATCGAT | 1 cut(s) | 2292 |
| CsiI | ACCWGGT | 1 cut(s) | 956 |
| Csp6I | GTAC | 9 cut(s) | 35, 389, 800, 1128, 1272, 1544, 1998, 2060, 2581 |
| CviQI | GTAC | 9 cut(s) | 35, 389, 800, 1128, 1272, 1544, 1998, 2060, 2581 |
| DdeI | CTNAG | 8 cut(s) | 789, 829, 1061, 1167, 1782, 1867, 2553, 2584 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 2625 |
| EarI | CTCTTC | 2 cut(s) | 33, 2625 |
| Ecl136II | GAGCTC | 1 cut(s) | 722 |
| Eco130I | CCWWGG | 1 cut(s) | 2499 |
| Eco147I | AGGCCT | 1 cut(s) | 1469 |
| Eco24I | GRGCYC | 2 cut(s) | 724, 1643 |
| Eco32I | GATATC | 1 cut(s) | 2290 |
| Eco47I | GGWCC | 3 cut(s) | 538, 1562, 1884 |
| Eco53kI | GAGCTC | 1 cut(s) | 722 |
| Eco57I | CTGAAG | 3 cut(s) | 1926, 2169, 2391 |
| Eco72I | CACGTG | 1 cut(s) | 1277 |
| Eco81I | CCTNAGG | 1 cut(s) | 789 |
| Eco88I | CYCGRG | 1 cut(s) | 2812 |
| EcoICRI | GAGCTC | 1 cut(s) | 722 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1639, 1884 |
| EcoRI | GAATTC | 1 cut(s) | 1037 |
| EcoRII | CCWGG | 5 cut(s) | 956, 1014, 1330, 1464, 1822 |
| EcoRV | GATATC | 1 cut(s) | 2290 |
| EcoT14I | CCWWGG | 1 cut(s) | 2499 |
| EcoT22I | ATGCAT | 1 cut(s) | 928 |
| EcoT38I | GRGCYC | 2 cut(s) | 724, 1643 |
| ErhI | CCWWGG | 1 cut(s) | 2499 |
| Esp3I | CGTCTC | 1 cut(s) | 527 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1899, 1931 |
| FaqI | GGGAC | 1 cut(s) | 328 |
| FauI | CCCGC | 1 cut(s) | 843 |
| FauNDI | CATATG | 2 cut(s) | 445, 866 |
| FbaI | TGATCA | 2 cut(s) | 1300, 1516 |
| FblI | GTMKAC | 2 cut(s) | 366, 1092 |
| FriOI | GRGCYC | 2 cut(s) | 724, 1643 |
| FspBI | CTAG | 5 cut(s) | 6, 1011, 1622, 1724, 1854 |
| FspI | TGCGCA | 1 cut(s) | 2254 |
| GlaI | GCGC | 1 cut(s) | 2254 |
| GsaI | CCCAGC | 2 cut(s) | 771, 1127 |
| HaeIII | GGCC | 3 cut(s) | 656, 1469, 1641 |
| HapII | CCGG | 2 cut(s) | 662, 2327 |
| HhaI | GCGC | 1 cut(s) | 2255 |
| Hin6I | GCGC | 1 cut(s) | 2253 |
| HinP1I | GCGC | 1 cut(s) | 2253 |
| HincII | GTYRAC | 3 cut(s) | 367, 872, 954 |
| HindII | GTYRAC | 3 cut(s) | 367, 872, 954 |
| HindIII | AAGCTT | 3 cut(s) | 841, 1058, 2181 |
| HpaII | CCGG | 2 cut(s) | 662, 2327 |
| HphI | GGTGA | 5 cut(s) | 100, 173, 1219, 2684, 2767 |
| Hpy99I | CGWCG | 2 cut(s) | 190, 438 |
| HpyAV | CCTTC | 5 cut(s) | 79, 762, 1165, 1262, 2502 |
| HpyCH4III | ACNGT | 7 cut(s) | 1214, 2059, 2104, 2134, 2273, 2308, 2338 |
| HpyCH4IV | ACGT | 2 cut(s) | 436, 1276 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 74, 217, 464, 603, 1480, 1584, 1607, 1706 |
| HpyF3I | CTNAG | 8 cut(s) | 789, 829, 1061, 1167, 1782, 1867, 2553, 2584 |
| HpySE526I | ACGT | 2 cut(s) | 436, 1276 |
| HspAI | GCGC | 1 cut(s) | 2253 |
| Kpn2I | TCCGGA | 1 cut(s) | 2326 |
| KpnI | GGTACC | 2 cut(s) | 1131, 2063 |
| Ksp22I | TGATCA | 2 cut(s) | 1300, 1516 |
| LguI | GCTCTTC | 1 cut(s) | 2625 |
| LmnI | GCTCC | 3 cut(s) | 1488, 2047, 2245 |
| Lsp1109I | GCAGC | 7 cut(s) | 52, 561, 583, 1040, 1590, 1613, 2622 |
| LweI | GCATC | 8 cut(s) | 136, 264, 445, 454, 483, 913, 935, 2366 |
| MabI | ACCWGGT | 1 cut(s) | 956 |
| MaeI | CTAG | 5 cut(s) | 6, 1011, 1622, 1724, 1854 |
| MaeII | ACGT | 2 cut(s) | 436, 1276 |
| MaeIII | GTNAC | 5 cut(s) | 101, 1285, 1827, 2273, 2777 |
| MflI | RGATCY | 5 cut(s) | 748, 1618, 1909, 2002, 2321 |
| MhlI | GDGCHC | 2 cut(s) | 724, 1643 |
| MlyI | GAGTC | 3 cut(s) | 688, 1244, 2564 |
| MmeI | TCCRAC | 2 cut(s) | 71, 209 |
| Mph1103I | ATGCAT | 1 cut(s) | 928 |
| MroI | TCCGGA | 1 cut(s) | 2326 |
| MroXI | GAANNNNTTC | 2 cut(s) | 267, 999 |
| MslI | CAYNNNNRTG | 4 cut(s) | 479, 485, 2070, 2085 |
| MspA1I | CMGCKG | 1 cut(s) | 574 |
| MspI | CCGG | 2 cut(s) | 662, 2327 |
| MspR9I | CCNGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| Mva1269I | GAATGC | 3 cut(s) | 555, 1138, 2508 |
| MvaI | CCWGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 74, 217, 464, 603, 1480, 1584, 1607, 1706 |
| NdeI | CATATG | 2 cut(s) | 445, 866 |
| NheI | GCTAGC | 1 cut(s) | 1010 |
| NlaIV | GGNNCC | 8 cut(s) | 540, 1129, 1328, 1379, 1641, 2004, 2061, 2731 |
| NmuCI | GTSAC | 2 cut(s) | 101, 2777 |
| NsbI | TGCGCA | 1 cut(s) | 2254 |
| NsiI | ATGCAT | 1 cut(s) | 928 |
| NspI | RCATGY | 4 cut(s) | 484, 1026, 1697, 1734 |
| NspV | TTCGAA | 2 cut(s) | 170, 2111 |
| PaeR7I | CTCGAG | 1 cut(s) | 2812 |
| PagI | TCATGA | 2 cut(s) | 1498, 2170 |
| PceI | AGGCCT | 1 cut(s) | 1469 |
| PciI | ACATGT | 1 cut(s) | 1022 |
| PciSI | GCTCTTC | 1 cut(s) | 2625 |
| PctI | GAATGC | 3 cut(s) | 555, 1138, 2508 |
| PdmI | GAANNNNTTC | 2 cut(s) | 267, 999 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 306, 402 |
| PleI | GAGTC | 3 cut(s) | 687, 1244, 2563 |
| PmaCI | CACGTG | 1 cut(s) | 1277 |
| PmlI | CACGTG | 1 cut(s) | 1277 |
| PpsI | GAGTC | 3 cut(s) | 687, 1244, 2563 |
| Ppu21I | YACGTR | 1 cut(s) | 1277 |
| PpuMI | RGGWCCY | 1 cut(s) | 1884 |
| PscI | ACATGT | 1 cut(s) | 1022 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1882 |
| Psp124BI | GAGCTC | 1 cut(s) | 724 |
| Psp5II | RGGWCCY | 1 cut(s) | 1884 |
| Psp6I | CCWGG | 5 cut(s) | 956, 1014, 1330, 1464, 1822 |
| PspCI | CACGTG | 1 cut(s) | 1277 |
| PspFI | CCCAGC | 2 cut(s) | 767, 1123 |
| PspGI | CCWGG | 5 cut(s) | 956, 1014, 1330, 1464, 1822 |
| PspN4I | GGNNCC | 8 cut(s) | 540, 1129, 1328, 1379, 1641, 2004, 2061, 2731 |
| PspOMI | GGGCCC | 1 cut(s) | 1639 |
| PspPI | GGNCC | 5 cut(s) | 538, 1562, 1639, 1640, 1884 |
| PspPPI | RGGWCCY | 1 cut(s) | 1884 |
| PspXI | VCTCGAGB | 1 cut(s) | 2812 |
| PstI | CTGCAG | 2 cut(s) | 1361, 1418 |
| PsuI | RGATCY | 5 cut(s) | 748, 1618, 1909, 2002, 2321 |
| PvuII | CAGCTG | 1 cut(s) | 574 |
| RsaI | GTAC | 9 cut(s) | 36, 390, 801, 1129, 1273, 1545, 1999, 2061, 2582 |
| RsaNI | GTAC | 9 cut(s) | 35, 389, 800, 1128, 1272, 1544, 1998, 2060, 2581 |
| RseI | CAYNNNNRTG | 4 cut(s) | 479, 485, 2070, 2085 |
| SacI | GAGCTC | 1 cut(s) | 724 |
| SalI | GTCGAC | 1 cut(s) | 365 |
| SapI | GCTCTTC | 1 cut(s) | 2625 |
| Sau96I | GGNCC | 5 cut(s) | 538, 1562, 1639, 1640, 1884 |
| SchI | GAGTC | 3 cut(s) | 688, 1244, 2564 |
| ScrFI | CCNGG | 5 cut(s) | 958, 1016, 1332, 1466, 1824 |
| SduI | GDGCHC | 2 cut(s) | 724, 1643 |
| SexAI | ACCWGGT | 1 cut(s) | 956 |
| SfaNI | GCATC | 8 cut(s) | 136, 264, 445, 454, 483, 913, 935, 2366 |
| SfcI | CTRYAG | 2 cut(s) | 1357, 1414 |
| Sfr274I | CTCGAG | 1 cut(s) | 2812 |
| SfuI | TTCGAA | 2 cut(s) | 170, 2111 |
| SinI | GGWCC | 3 cut(s) | 538, 1562, 1884 |
| SlaI | CTCGAG | 1 cut(s) | 2812 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 479, 485, 2070, 2085 |
| SmlI | CTYRAG | 4 cut(s) | 1055, 1397, 2597, 2812 |
| SmoI | CTYRAG | 4 cut(s) | 1055, 1397, 2597, 2812 |
| SseBI | AGGCCT | 1 cut(s) | 1469 |
| SsiI | CCGC | 9 cut(s) | 211, 214, 217, 311, 458, 850, 899, 1535, 1685 |
| SspI | AATATT | 1 cut(s) | 1348 |
| SspMI | CTAG | 5 cut(s) | 6, 1011, 1622, 1724, 1854 |
| SstI | GAGCTC | 1 cut(s) | 724 |
| StuI | AGGCCT | 1 cut(s) | 1469 |
| StyD4I | CCNGG | 5 cut(s) | 956, 1014, 1330, 1464, 1822 |
| StyI | CCWWGG | 1 cut(s) | 2499 |
| TaaI | ACNGT | 7 cut(s) | 1214, 2059, 2104, 2134, 2273, 2308, 2338 |
| TaiI | ACGT | 2 cut(s) | 439, 1279 |
| TaqI | TCGA | 7 cut(s) | 83, 170, 366, 433, 2111, 2292, 2813 |
| TatI | WGTACW | 4 cut(s) | 34, 799, 1543, 2580 |
| TauI | GCSGC | 4 cut(s) | 214, 217, 220, 314 |
| TscAI | CASTG | 6 cut(s) | 830, 837, 1093, 2107, 2698, 2782 |
| TseFI | GTSAC | 2 cut(s) | 101, 2777 |
| TseI | GCWGC | 7 cut(s) | 65, 571, 574, 1028, 1578, 1601, 2635 |
| Tsp45I | GTSAC | 2 cut(s) | 101, 2777 |
| TspGWI | ACGGA | 3 cut(s) | 551, 2015, 2244 |
| TspRI | CASTG | 6 cut(s) | 830, 837, 1093, 2107, 2698, 2782 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 306, 402 |
| VpaK11BI | GGWCC | 3 cut(s) | 538, 1562, 1884 |
| XapI | RAATTY | 3 cut(s) | 357, 686, 1037 |
| XbaI | TCTAGA | 1 cut(s) | 1621 |
| XceI | RCATGY | 4 cut(s) | 484, 1026, 1697, 1734 |
| XhoI | CTCGAG | 1 cut(s) | 2812 |
| XmiI | GTMKAC | 2 cut(s) | 366, 1092 |
| XmnI | GAANNNNTTC | 2 cut(s) | 267, 999 |
| XspI | CTAG | 5 cut(s) | 6, 1011, 1622, 1724, 1854 |
| Zsp2I | ATGCAT | 1 cut(s) | 928 |