Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000990

Physical Location & Seq

Genomic Coordinates Reverse (-)

91747747 .. 91748521

Gene Structure 775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG534700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTAGATGGGATGAGATTCTGTCTCTTCCTGTACAGAATCCTCCGACTTTGGAGTTTTCTGCTGCTGATCTTGTGTGGTCGAAGGTGGAAGGTTGGCGTGACAAGAAAGATAGAGTTGCTGTAATCCCCTATGCCAGAGTTGATGCTTTTGTGAGGGGTGAATCTTCGAACAAAGAGTGTCCAACAAGATTTCATGTGGAAGCGAGGCGGAGGCGGCAGGCAAAGACTAATTGCAAACCAAAGGTTGATGGCATCCTTGAATATATTCTATATTGGTGTTCTTTTGGTCCTGATGACCACAGGATGGGCGGCTCTATACGACCCAGTAGGACTAATTATGTCCCAAAGAAGAAAAATTCTGGTCGACCAAACACCAAGAGAGGTTGTACCTGCCACTTTATGGTGAAACGCTTAATTGCTGAACCGTCAGTAGCGCTTCTTGTGTATAATTCTGTTAAGCATGTGGATACGAAAGGATTGCCATGCCATGGCCCAGAAGATAAGATGGCTGCTGGAACACACGCTATGTTTGCCCCATACATCTCTGAGGATCTACGCCTTCGTGTGCTATCTTTGCTATATGTGGGGGTCTCCGTGGAGACCATAATGCAGAGACACACTGAATCCGTAGGGAGACAGGGTGGTCCATGTAATCGTGATGACCTCTTAACTCTTAACCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

25.79

Weight (kDa)

9.45

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13970 AT4G13970
fragaria_vesca	FvH4_3g45511 FvH4_3g45511
malus_domestica	MD09G1283600.v1.1 MD15G1114100.v1.1 MD17G1276900.v1.1 MD17G1277000.v1.1
prunus_persica	Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1
pyrus_communis	pycom09g19150 pycom15g10240 pycom17g27460 pycom17g27470
rosa_chinensis	RchiOBHm_Chr5g0069181 RchiOBHm_Chr5g0083411 RchiOBHm_Chr5g0083541 RchiOBHm_Chr5g0083621 RchiOBHm_Chr5g0083661
rosa_laevigata	RLG00000037036 RLG00000037037
rosa_multiflora	Rmu_sc0001444.1_g000006 Rmu_sc0001444.1_g000007 Rmu_sc0002245.1_g000017 Rmu_sc0002245.1_g000026 Rmu_sc0002245.1_g000039 Rmu_sc0006217.1_g000003 Rmu_sc0024012.1_g000001 Rmu_sc0042520.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001100 Rroxscaffold_3G00218200
rosa_rugosa	Rorug05G0484900 Rorug05G0484900 Rorug05G0485000
rosa_samantha	Rh5AG534600 Rh5AG534700 Rh5AG535800 Rh5AG536400 Rh5AG536500 Rh5AG537000 Rh5AG538000 Rh5BG561800 Rh5BG562100 Rh5BG562400 Rh5BG562500 Rh5BG562600 Rh5BG562900 Rh5BG563000 Rh5CG584200 Rh5CG584500 Rh5CG584800 Rh5CG585300 Rh5DG570500 Rh5DG570700 Rh5DG571100 Rh5DG571300
rosa_wichuraiana	Rw5G049860 Rw5G050490 Rw5G050520 Rw5G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	645
Acc36I	ACCTGC	1 cut(s)	401
AccB7I	CCANNNNNTGG	3 cut(s)	307, 403, 491
AccI	GTMKAC	1 cut(s)	367
AciI	CCGC	3 cut(s)	211, 217, 312
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	2 cut(s)	36, 391
AfeI	AGCGCT	1 cut(s)	438
AfiI	CCNNNNNNNGG	3 cut(s)	307, 403, 491
AgsI	TTSAA	1 cut(s)	263
Alw26I	GTCTC	5 cut(s)	30, 596, 598, 610, 631
AlwI	GGATC	1 cut(s)	561
Aor51HI	AGCGCT	1 cut(s)	438
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	65, 512
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	3 cut(s)	290, 494, 647
AsuHPI	GGTGA	2 cut(s)	173, 418
AsuII	TTCGAA	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	290, 647
BbvI	GCAGC	2 cut(s)	52, 499
BccI	CCATC	4 cut(s)	3, 245, 301, 502
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciVI	GTATCC	1 cut(s)	463
BcoDI	GTCTC	5 cut(s)	30, 596, 598, 610, 631
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	4 cut(s)	66, 218, 313, 513
BlsI	GCNGC	4 cut(s)	67, 219, 314, 514
Bme18I	GGWCC	2 cut(s)	290, 647
BmgT120I	GGNCC	3 cut(s)	290, 494, 647
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	2 cut(s)	136, 264
BmuI	ACTGGG	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	170
BsaI	GGTCTC	2 cut(s)	596, 598
BsaJI	CCNNGG	2 cut(s)	490, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 403, 491
Bse1I	ACTGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	490, 597
BseGI	GGATG	3 cut(s)	19, 255, 312
BseLI	CCNNNNNNNGG	3 cut(s)	307, 403, 491
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	52, 499
BshFI	GGCC	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	307, 403, 491
BsmAI	GTCTC	5 cut(s)	30, 596, 598, 610, 631
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	495
Bso31I	GGTCTC	2 cut(s)	596, 598
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	70, 553
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	3 cut(s)	211, 217, 312
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	1 cut(s)	561
BspT104I	TTCGAA	1 cut(s)	170
BspTNI	GGTCTC	2 cut(s)	596, 598
BsrGI	TGTACA	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	490, 597
BssMI	GATC	2 cut(s)	70, 553
BssT1I	CCWWGG	1 cut(s)	490
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	549
BstDSI	CCRYGG	2 cut(s)	490, 597
BstF5I	GGATG	3 cut(s)	19, 255, 312
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	73, 556
BstMAI	GTCTC	5 cut(s)	30, 596, 598, 610, 631
BstMBI	GATC	2 cut(s)	70, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 533, 577
BstNSI	RCATGY	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	52, 499
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	495
BtgI	CCRYGG	2 cut(s)	490, 597
BtsCI	GGATG	3 cut(s)	19, 255, 312
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	222
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	3 cut(s)	290, 494, 647
Csp6I	GTAC	2 cut(s)	35, 390
CviAII	CATG	5 cut(s)	197, 464, 486, 491, 651
CviJI	RGCY	4 cut(s)	5, 315, 495, 512
CviKI_1	RGCY	4 cut(s)	5, 315, 495, 512
CviQI	GTAC	2 cut(s)	35, 390
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	2 cut(s)	72, 555
DpnII	GATC	2 cut(s)	70, 553
DrdI	GACNNNNNNGTC	1 cut(s)	645
DseDI	GACNNNNNNGTC	1 cut(s)	645
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	490
Eco31I	GGTCTC	2 cut(s)	596, 598
Eco47I	GGWCC	2 cut(s)	290, 647
Eco47III	AGCGCT	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	5 cut(s)	200, 467, 489, 494, 654
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	5 cut(s)	196, 463, 485, 490, 650
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	4 cut(s)	66, 218, 313, 513
FokI	GGATG	3 cut(s)	26, 242, 319
Fsp4HI	GCNGC	4 cut(s)	66, 218, 313, 513
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	4 cut(s)	66, 218, 313, 513
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	5 cut(s)	200, 467, 489, 494, 654
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	368
HindII	GTYRAC	1 cut(s)	368
HinfI	GANTC	4 cut(s)	19, 40, 164, 626
HphI	GGTGA	2 cut(s)	173, 418
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	2 cut(s)	48, 550
Hpy188III	TCNNGA	2 cut(s)	293, 659
Hpy8I	GTNNAC	1 cut(s)	368
HpyAV	CCTTC	3 cut(s)	79, 86, 572
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4V	TGCA	2 cut(s)	237, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 533, 577
HpyF3I	CTNAG	1 cut(s)	549
Hsp92II	CATG	5 cut(s)	200, 467, 489, 494, 654
HspAI	GCGC	1 cut(s)	437
Kzo9I	GATC	2 cut(s)	70, 553
Lsp1109I	GCAGC	2 cut(s)	52, 499
LweI	GCATC	2 cut(s)	136, 264
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	72, 555
MboI	GATC	2 cut(s)	70, 553
MboII	GAAGA	4 cut(s)	20, 159, 364, 512
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	5 cut(s)	232, 337, 358, 417, 451
MmeI	TCCRAC	2 cut(s)	71, 209
MnlI	CCTC	7 cut(s)	54, 150, 201, 207, 377, 544, 677
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	4 cut(s)	416, 459, 671, 678
MwoI	GCNNNNNNNGC	3 cut(s)	217, 533, 577
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	2 cut(s)	70, 553
NlaIII	CATG	5 cut(s)	200, 467, 489, 494, 654
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	467
NspV	TTCGAA	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	4 cut(s)	19, 40, 164, 626
PflMI	CCANNNNNTGG	3 cut(s)	307, 403, 491
PkrI	GCNGC	4 cut(s)	67, 219, 314, 514
PspPI	GGNCC	3 cut(s)	290, 494, 647
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	2 cut(s)	36, 391
RsaNI	GTAC	2 cut(s)	35, 390
SalI	GTCGAC	1 cut(s)	366
SaqAI	TTAA	4 cut(s)	416, 459, 671, 678
SatI	GCNGC	4 cut(s)	66, 218, 313, 513
Sau3AI	GATC	2 cut(s)	70, 553
Sau96I	GGNCC	3 cut(s)	290, 494, 647
SetI	ASST	6 cut(s)	90, 97, 249, 388, 395, 669
SfaNI	GCATC	2 cut(s)	136, 264
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	2 cut(s)	290, 647
Sse9I	AATT	5 cut(s)	232, 337, 358, 417, 451
SsiI	CCGC	3 cut(s)	211, 217, 312
SspMI	CTAG	1 cut(s)	6
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	83, 170, 367
TasI	AATT	5 cut(s)	232, 337, 358, 417, 451
TatI	WGTACW	1 cut(s)	34
TauI	GCSGC	2 cut(s)	220, 315
TfiI	GAWTC	4 cut(s)	19, 40, 164, 626
Tru1I	TTAA	4 cut(s)	416, 459, 671, 678
Tru9I	TTAA	4 cut(s)	416, 459, 671, 678
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	65, 512
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	2 cut(s)	586, 619
TspRI	CASTG	1 cut(s)	628
Van91I	CCANNNNNTGG	3 cut(s)	307, 403, 491
VpaK11BI	GGWCC	2 cut(s)	290, 647
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.