Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000990

Physical Location & Seq

Genomic Coordinates Reverse (-)

92177727 .. 92178125

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG536400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTGCTGGAACGAGCGCTACGTTTGCCCCATACATCTCTGAGGATCTACGCCTTCGTGTGCTATCTTTGCTATATGTGGGGGTCTCCGTGGAGACCATAATGCAGAGACACACTGAATCCGTAGAGAGACAGGGTGGTCCATGTAATCGTGATGACCTCTTAACCCATAGGTATGGTCGCAGACAGGAGAGGATCATTCGACGTTCTACATATGAATTGAATGCGGATGCGGATGATGCAGTTAGCATCAGCATGTGGGTGGAAAACCATCAGAATAGCATTTTCTTCTATGAGGATTTCTCCGAGACGGACCCTTTCACTTTGGGCATTCAAACAGACTGGCAGCTGCAACAGATGATTCGCTTTGGCAATCACAGCCTTATAGCCTCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.22

Weight (kDa)

4.98

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13970 AT4G13970
fragaria_vesca	FvH4_3g45511 FvH4_3g45511
malus_domestica	MD09G1283600.v1.1 MD15G1114100.v1.1 MD17G1276900.v1.1 MD17G1277000.v1.1
prunus_persica	Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1
pyrus_communis	pycom09g19150 pycom15g10240 pycom17g27460 pycom17g27470
rosa_chinensis	RchiOBHm_Chr5g0069181 RchiOBHm_Chr5g0083411 RchiOBHm_Chr5g0083541 RchiOBHm_Chr5g0083621 RchiOBHm_Chr5g0083661
rosa_laevigata	RLG00000037036 RLG00000037037
rosa_multiflora	Rmu_sc0001444.1_g000006 Rmu_sc0001444.1_g000007 Rmu_sc0002245.1_g000017 Rmu_sc0002245.1_g000026 Rmu_sc0002245.1_g000039 Rmu_sc0006217.1_g000003 Rmu_sc0024012.1_g000001 Rmu_sc0042520.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001100 Rroxscaffold_3G00218200
rosa_rugosa	Rorug05G0484900 Rorug05G0484900 Rorug05G0485000
rosa_samantha	Rh5AG534600 Rh5AG534700 Rh5AG535800 Rh5AG536400 Rh5AG536500 Rh5AG537000 Rh5AG538000 Rh5BG561800 Rh5BG562100 Rh5BG562400 Rh5BG562500 Rh5BG562600 Rh5BG562900 Rh5BG563000 Rh5CG584200 Rh5CG584500 Rh5CG584800 Rh5CG585300 Rh5DG570500 Rh5DG570700 Rh5DG571100 Rh5DG571300
rosa_wichuraiana	Rw5G049860 Rw5G050490 Rw5G050520 Rw5G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	138
AciI	CCGC	2 cut(s)	227, 233
AclWI	GGATC	2 cut(s)	54, 203
AfeI	AGCGCT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	223, 335
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	5 cut(s)	89, 91, 103, 124, 302
AlwI	GGATC	2 cut(s)	54, 203
Aor51HI	AGCGCT	1 cut(s)	19
ApeKI	GCWGC	3 cut(s)	5, 346, 349
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	140, 313
AvaII	GGWCC	2 cut(s)	140, 313
BbvI	GCAGC	2 cut(s)	336, 358
BccI	CCATC	1 cut(s)	279
BcoDI	GTCTC	5 cut(s)	89, 91, 103, 124, 302
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	3 cut(s)	6, 347, 350
BlsI	GCNGC	3 cut(s)	7, 348, 351
Bme18I	GGWCC	2 cut(s)	140, 313
BmgT120I	GGNCC	2 cut(s)	140, 313
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	3 cut(s)	220, 229, 258
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BsaI	GGTCTC	2 cut(s)	89, 91
BsaJI	CCNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	235, 241
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	336, 358
BsmAI	GTCTC	5 cut(s)	89, 91, 103, 124, 302
BsmBI	CGTCTC	1 cut(s)	302
BsmI	GAATGC	2 cut(s)	229, 330
Bso31I	GGTCTC	2 cut(s)	89, 91
Bsp143I	GATC	2 cut(s)	46, 195
BspACI	CCGC	2 cut(s)	227, 233
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	2 cut(s)	54, 203
BspTNI	GGTCTC	2 cut(s)	89, 91
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	46, 195
BstDEI	CTNAG	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	235, 241
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	49, 198
BstMAI	GTCTC	5 cut(s)	89, 91, 103, 124, 302
BstMBI	GATC	2 cut(s)	46, 195
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 70, 239, 378
BstNSI	RCATGY	1 cut(s)	259
BstV1I	GCAGC	2 cut(s)	336, 358
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	235, 241
BtsIMutI	CAGTG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	2 cut(s)	140, 313
CviAII	CATG	2 cut(s)	144, 256
CviJI	RGCY	4 cut(s)	5, 349, 381, 389
CviKI_1	RGCY	4 cut(s)	5, 349, 381, 389
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	2 cut(s)	48, 197
DpnII	GATC	2 cut(s)	46, 195
DrdI	GACNNNNNNGTC	1 cut(s)	138
DseDI	GACNNNNNNGTC	1 cut(s)	138
Eco31I	GGTCTC	2 cut(s)	89, 91
Eco47I	GGWCC	2 cut(s)	140, 313
Eco47III	AGCGCT	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	2 cut(s)	147, 259
FatI	CATG	2 cut(s)	143, 255
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	6, 347, 350
FokI	GGATG	2 cut(s)	242, 248
Fsp4HI	GCNGC	3 cut(s)	6, 347, 350
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	3 cut(s)	6, 347, 350
HaeII	RGCGCY	1 cut(s)	21
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	147, 259
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	119, 361
Hpy188I	TCNGA	4 cut(s)	43, 276, 307, 394
Hpy188III	TCNNGA	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	65
HpyCH4IV	ACGT	2 cut(s)	23, 205
HpyCH4V	TGCA	3 cut(s)	106, 242, 352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 70, 239, 378
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	2 cut(s)	23, 205
Hsp92II	CATG	2 cut(s)	147, 259
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	46, 195
LpnPI	CCDG	3 cut(s)	119, 173, 328
Lsp1109I	GCAGC	2 cut(s)	336, 358
LweI	GCATC	3 cut(s)	220, 229, 258
MaeII	ACGT	2 cut(s)	23, 205
MalI	GATC	2 cut(s)	48, 197
MboI	GATC	2 cut(s)	46, 195
MboII	GAAGA	1 cut(s)	280
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	1 cut(s)	218
MnlI	CCTC	4 cut(s)	37, 170, 186, 289
MseI	TTAA	2 cut(s)	164, 397
MslI	CAYNNNNRTG	3 cut(s)	174, 254, 260
MspA1I	CMGCKG	1 cut(s)	349
Mva1269I	GAATGC	2 cut(s)	229, 330
MwoI	GCNNNNNNNGC	4 cut(s)	26, 70, 239, 378
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	2 cut(s)	46, 195
NlaIII	CATG	2 cut(s)	147, 259
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	2 cut(s)	229, 330
PfeI	GAWTC	2 cut(s)	119, 361
PkrI	GCNGC	3 cut(s)	7, 348, 351
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	140, 313
PsrI	GAACNNNNNNTAC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	46
PvuII	CAGCTG	1 cut(s)	349
RseI	CAYNNNNRTG	3 cut(s)	174, 254, 260
SaqAI	TTAA	2 cut(s)	164, 397
SatI	GCNGC	3 cut(s)	6, 347, 350
Sau3AI	GATC	2 cut(s)	46, 195
Sau96I	GGNCC	2 cut(s)	140, 313
SetI	ASST	5 cut(s)	26, 162, 176, 208, 351
SfaNI	GCATC	3 cut(s)	220, 229, 258
SinI	GGWCC	2 cut(s)	140, 313
SmiMI	CAYNNNNRTG	3 cut(s)	174, 254, 260
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	2 cut(s)	227, 233
TaiI	ACGT	2 cut(s)	26, 208
TaqI	TCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	218
TfiI	GAWTC	2 cut(s)	119, 361
Tru1I	TTAA	2 cut(s)	164, 397
Tru9I	TTAA	2 cut(s)	164, 397
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	3 cut(s)	5, 346, 349
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	3 cut(s)	79, 112, 326
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	140, 313
XceI	RCATGY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.