Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042520.1

Orthogroup ID

OG0000990

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 917

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042520.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggatgttgacccatcatccatctgtatttctccacctgggttacattctgttgatgaggttgtgtctggtggtgtcctctcacgaagcagacagaggcccttgtttaacacagaaactgaagatctgcttcccgcagatgatcctctcgctaagtcaagtgaatatgaggatgatatgttagatgaaaattgtgaaaaaaatgtgatgagtacagatccactctcccttcatatcccttgttcagcaatggagtttgtggagcaatacactgtaccccattctaatgatctccacagccatgaagtcaatcccgccgttatttcaaaagtatgtgatgacaatacagtatataacaatacctccccatcttcatctgtgcctgttgaaccacaagcttcaggtgtcatagaaaatgagagcatggaaattgaaagtgtggacggaatggactttgtggagcattgcccattaaccaatcctaatggtaatcacagccatgatatcgatattgcgcctactgttatttccaaaagatcctctgacaataccgtttataacaagacctctgcatctgcatctatgcctgttgaatcagaaatggttgtactggctgaaacctcaggtatcattttagaaaatggtagaatggaaatcggaagtgagaatggaaacacaagtaagcacaatctgtctgctgataatccttccaccttggacggcattcgtggttgtatgataaatgattcagattttagtcaggattcagagccagttggcaatgcgatggttgtgtacccagaaccattgctcaagttctcatcaacatcaagttgcaacaaggaagagctgcctgttgagaatggggccactgaaactgggtctagtgagaagccatcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

300

Amino Acids

32.26

Weight (kDa)

4.2

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13970 AT4G13970
fragaria_vesca	FvH4_3g45511 FvH4_3g45511
malus_domestica	MD09G1283600.v1.1 MD15G1114100.v1.1 MD17G1276900.v1.1 MD17G1277000.v1.1
prunus_persica	Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1 Prupe.2G124200_v2.0.a1
pyrus_communis	pycom09g19150 pycom15g10240 pycom17g27460 pycom17g27470
rosa_chinensis	RchiOBHm_Chr5g0069181 RchiOBHm_Chr5g0083411 RchiOBHm_Chr5g0083541 RchiOBHm_Chr5g0083621 RchiOBHm_Chr5g0083661
rosa_laevigata	RLG00000037036 RLG00000037037
rosa_multiflora	Rmu_sc0001444.1_g000006 Rmu_sc0001444.1_g000007 Rmu_sc0002245.1_g000017 Rmu_sc0002245.1_g000026 Rmu_sc0002245.1_g000039 Rmu_sc0006217.1_g000003 Rmu_sc0024012.1_g000001 Rmu_sc0042520.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001100 Rroxscaffold_3G00218200
rosa_rugosa	Rorug05G0484900 Rorug05G0484900 Rorug05G0485000
rosa_samantha	Rh5AG534600 Rh5AG534700 Rh5AG535800 Rh5AG536400 Rh5AG536500 Rh5AG537000 Rh5AG538000 Rh5BG561800 Rh5BG562100 Rh5BG562400 Rh5BG562500 Rh5BG562600 Rh5BG562900 Rh5BG563000 Rh5CG584200 Rh5CG584500 Rh5CG584800 Rh5CG585300 Rh5DG570500 Rh5DG570700 Rh5DG571100 Rh5DG571300
rosa_wichuraiana	Rw5G049860 Rw5G050490 Rw5G050520 Rw5G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AciI	CCGC	2 cut(s)	135, 315
AclWI	GGATC	3 cut(s)	137, 212, 531
AcuI	CTGAAG	2 cut(s)	141, 384
AfaI	GTAC	4 cut(s)	214, 276, 609, 797
AgsI	TTSAA	4 cut(s)	327, 389, 434, 593
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	398, 850
AluI	AGCT	2 cut(s)	398, 850
AlwI	GGATC	3 cut(s)	137, 212, 531
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	98, 867
ApeKI	GCWGC	1 cut(s)	850
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	2 cut(s)	99, 867
AxyI	CCTNAGG	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	837
BccI	CCATC	4 cut(s)	22, 29, 376, 781
BceAI	ACGGC	2 cut(s)	302, 736
BciT130I	CCWGG	1 cut(s)	39
BfaI	CTAG	1 cut(s)	885
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	851
BlsI	GCNGC	1 cut(s)	852
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	99, 867
BmiI	GGNNCC	1 cut(s)	868
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	2 cut(s)	581, 587
BmuI	ACTGGG	1 cut(s)	888
BpuEI	CTTGAG	1 cut(s)	797
Bsa29I	ATCGAT	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	38, 714
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	3 cut(s)	615, 773, 883
Bse21I	CCTNAGG	1 cut(s)	622
Bse3DI	GCAATG	4 cut(s)	255, 463, 787, 806
BseBI	CCWGG	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	38, 714
BseGI	GGATG	3 cut(s)	10, 17, 178
BseMI	GCAATG	4 cut(s)	255, 463, 787, 806
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	3 cut(s)	615, 773, 883
BseXI	GCAGC	1 cut(s)	837
BshFI	GGCC	2 cut(s)	100, 869
BshVI	ATCGAT	1 cut(s)	507
BsmI	GAATGC	1 cut(s)	723
BsnI	GGCC	2 cut(s)	100, 869
Bsp143I	GATC	5 cut(s)	124, 142, 217, 289, 536
BspACI	CCGC	2 cut(s)	135, 315
BspANI	GGCC	2 cut(s)	100, 869
BspCNI	CTCAG	1 cut(s)	635
BspDI	ATCGAT	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	868
BspPI	GGATC	3 cut(s)	137, 212, 531
BspQI	GCTCTTC	1 cut(s)	840
BsrDI	GCAATG	4 cut(s)	255, 463, 787, 806
BsrI	ACTGG	3 cut(s)	615, 773, 883
BssECI	CCNNGG	2 cut(s)	38, 714
BssMI	GATC	5 cut(s)	124, 142, 217, 289, 536
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	274, 349, 523, 553
Bst6I	CTCTTC	1 cut(s)	840
BstDEI	CTNAG	2 cut(s)	153, 622
BstF5I	GGATG	3 cut(s)	10, 17, 178
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	5 cut(s)	127, 145, 220, 292, 539
BstMBI	GATC	5 cut(s)	124, 142, 217, 289, 536
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	837
BstX2I	RGATCY	3 cut(s)	124, 217, 536
BstYI	RGATCY	3 cut(s)	124, 217, 536
Bsu15I	ATCGAT	1 cut(s)	507
Bsu36I	CCTNAGG	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	100, 869
BsuTUI	ATCGAT	1 cut(s)	507
BtgZI	GCGATG	1 cut(s)	800
BtsCI	GGATG	3 cut(s)	10, 17, 178
BtsIMutI	CAGTG	2 cut(s)	270, 870
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	2 cut(s)	99, 867
ClaI	ATCGAT	1 cut(s)	507
Csp6I	GTAC	4 cut(s)	213, 275, 608, 796
CviAII	CATG	3 cut(s)	302, 424, 500
CviJI	RGCY	9 cut(s)	100, 300, 398, 498, 614, 772, 850, 869, 895
CviKI_1	RGCY	9 cut(s)	100, 300, 398, 498, 614, 772, 850, 869, 895
CviQI	GTAC	4 cut(s)	213, 275, 608, 796
DdeI	CTNAG	2 cut(s)	153, 622
DpnI	GATC	5 cut(s)	126, 144, 219, 291, 538
DpnII	GATC	5 cut(s)	124, 142, 217, 289, 536
Eam1104I	CTCTTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	840
Eco130I	CCWWGG	1 cut(s)	714
Eco32I	GATATC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	141, 384
Eco81I	CCTNAGG	1 cut(s)	622
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	3 cut(s)	305, 427, 503
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	3 cut(s)	301, 423, 499
FauI	CCCGC	2 cut(s)	142, 322
Fnu4HI	GCNGC	1 cut(s)	851
FokI	GGATG	3 cut(s)	4, 17, 185
Fsp4HI	GCNGC	1 cut(s)	851
FspBI	CTAG	1 cut(s)	885
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	851
HaeIII	GGCC	2 cut(s)	100, 869
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	3 cut(s)	305, 427, 503
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	3 cut(s)	593, 746, 764
Hpy166II	GTNNAC	3 cut(s)	10, 442, 796
Hpy188I	TCNGA	5 cut(s)	544, 598, 659, 751, 769
Hpy188III	TCNNGA	3 cut(s)	84, 761, 900
Hpy8I	GTNNAC	3 cut(s)	10, 442, 796
HpyAV	CCTTC	2 cut(s)	239, 717
HpyCH4III	ACNGT	4 cut(s)	274, 349, 523, 553
HpyCH4V	TGCA	3 cut(s)	572, 578, 837
HpyF3I	CTNAG	2 cut(s)	153, 622
Hsp92II	CATG	3 cut(s)	305, 427, 503
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	5 cut(s)	124, 142, 217, 289, 536
LguI	GCTCTTC	1 cut(s)	840
LmnI	GCTCC	2 cut(s)	262, 460
Lsp1109I	GCAGC	1 cut(s)	837
LweI	GCATC	2 cut(s)	581, 587
MaeI	CTAG	1 cut(s)	885
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	5 cut(s)	126, 144, 219, 291, 538
MboI	GATC	5 cut(s)	124, 142, 217, 289, 536
MboII	GAAGA	3 cut(s)	134, 363, 857
MflI	RGATCY	3 cut(s)	124, 217, 536
MluCI	AATT	2 cut(s)	190, 429
MnlI	CCTC	9 cut(s)	52, 89, 90, 156, 163, 373, 550, 577, 631
MseI	TTAA	2 cut(s)	108, 473
MslI	CAYNNNNRTG	3 cut(s)	285, 300, 498
MspR9I	CCNGG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	5 cut(s)	124, 142, 217, 289, 536
NlaIII	CATG	3 cut(s)	305, 427, 503
NlaIV	GGNNCC	1 cut(s)	868
PciSI	GCTCTTC	1 cut(s)	840
PctI	GAATGC	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	593, 746, 764
PkrI	GCNGC	1 cut(s)	852
PsiI	TTATAA	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	868
PspPI	GGNCC	2 cut(s)	99, 867
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	124, 217, 536
RsaI	GTAC	4 cut(s)	214, 276, 609, 797
RsaNI	GTAC	4 cut(s)	213, 275, 608, 796
RseI	CAYNNNNRTG	3 cut(s)	285, 300, 498
SapI	GCTCTTC	1 cut(s)	840
SaqAI	TTAA	2 cut(s)	108, 473
SatI	GCNGC	1 cut(s)	851
Sau3AI	GATC	5 cut(s)	124, 142, 217, 289, 536
Sau96I	GGNCC	2 cut(s)	99, 867
ScrFI	CCNGG	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	581, 587
SmiMI	CAYNNNNRTG	3 cut(s)	285, 300, 498
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	2 cut(s)	190, 429
SsiI	CCGC	2 cut(s)	135, 315
SspMI	CTAG	1 cut(s)	885
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	4 cut(s)	274, 349, 523, 553
TaqI	TCGA	1 cut(s)	507
TasI	AATT	2 cut(s)	190, 429
TatI	WGTACW	2 cut(s)	212, 607
TfiI	GAWTC	3 cut(s)	593, 746, 764
Tru1I	TTAA	2 cut(s)	108, 473
Tru9I	TTAA	2 cut(s)	108, 473
TscAI	CASTG	2 cut(s)	277, 877
TseI	GCWGC	1 cut(s)	850
TspDTI	ATGAA	4 cut(s)	201, 221, 318, 363
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	2 cut(s)	277, 877
XspI	CTAG	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.