Rh5AG535800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000990
Physical Location & Seq
Reverse (-)
91949499 .. 91949972
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG535800.1

Sequence Viewer

Length: 387 bp
ATGTGGGTGGAAAACCATCAGAATAGCATCTTCTTCTATCAGGATTTCTCCAAGACAGACCCTTTTACTTTGGGCATTCAAACAGACTGGCAGTTGCAACAGATGATTCGCTTTGGCAATCACAGCCTTATAGCCTCTGATTCAAGGTTCGGAACAAACAAATTAAAGTATCCTGTTCACAGTCTCCTTGTATTTAACCAAGACAACAAGGCCATTCCGGTAGCATGGATAGTGAGTCCAAAATTTGCAAGTTCTGATACCCATAAATGGATGAGAGCTCTTTACAATAGAGTTCAGACGAAAGATCCTTCATGGAAGTTGGCTGGCTTCATAGTGGATGATCCTCAGGCTGATGTACACACTATCAGGTGCTCAGTCATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.87

Weight (kDa)

8.79

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 299, 335
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 2 cut(s) 80, 144
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw21I GWGCWC 2 cut(s) 280, 374
Alw26I GTCTC 1 cut(s) 188
AlwI GGATC 2 cut(s) 299, 335
AoxI GGCC 1 cut(s) 210
ApoI RAATTY 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 345
BanII GRGCYC 1 cut(s) 280
Bbv12I GWGCWC 2 cut(s) 280, 374
BccI CCATC 1 cut(s) 24
BciVI GTATCC 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 188
BfuI GTATCC 1 cut(s) 180
BmsI GCATC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 276, 343
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 359, 387
BseNI ACTGG 1 cut(s) 92
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 280, 374
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 280, 374
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 304, 340
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 2 cut(s) 358, 386
BspPI GGATC 2 cut(s) 299, 335
BsrGI TGTACA 1 cut(s) 355
BsrI ACTGG 1 cut(s) 92
BssMI GATC 2 cut(s) 304, 340
Bst4CI ACNGT 1 cut(s) 182
BstAUI TGTACA 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 2 cut(s) 345, 373
BstF5I GGATG 2 cut(s) 276, 343
BstKTI GATC 2 cut(s) 307, 343
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 2 cut(s) 304, 340
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 345
BsuI GTATCC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 276, 343
Cac8I GCNNGC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 356
CviAII CATG 2 cut(s) 225, 312
CviJI RGCY 7 cut(s) 126, 134, 212, 278, 323, 327, 350
CviKI_1 RGCY 7 cut(s) 126, 134, 212, 278, 323, 327, 350
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 2 cut(s) 345, 373
DpnI GATC 2 cut(s) 306, 342
DpnII GATC 2 cut(s) 304, 340
Ecl136II GAGCTC 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 278
Eco81I CCTNAGG 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 2 cut(s) 228, 315
FaiI YATR 5 cut(s) 131, 226, 264, 313, 332
FatI CATG 2 cut(s) 224, 311
FokI GGATG 2 cut(s) 283, 350
FriOI GRGCYC 1 cut(s) 280
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 218
Hin1II CATG 2 cut(s) 228, 315
HinfI GANTC 3 cut(s) 106, 140, 235
HpaII CCGG 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 178, 358
Hpy188I TCNGA 5 cut(s) 21, 139, 152, 256, 297
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 2 cut(s) 178, 358
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 2 cut(s) 97, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
HpyF3I CTNAG 2 cut(s) 345, 373
Hsp92II CATG 2 cut(s) 228, 315
Kzo9I GATC 2 cut(s) 304, 340
LpnPI CCDG 7 cut(s) 26, 73, 186, 231, 309, 332, 352
LweI GCATC 1 cut(s) 36
MalI GATC 2 cut(s) 306, 342
MboI GATC 2 cut(s) 304, 340
MboII GAAGA 2 cut(s) 22, 25
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 280, 374
MluCI AATT 2 cut(s) 161, 242
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 2 cut(s) 145, 354
MseI TTAA 3 cut(s) 164, 195, 385
MspI CCGG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 2 cut(s) 304, 340
NlaIII CATG 2 cut(s) 228, 315
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 106, 140
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Psp124BI GAGCTC 1 cut(s) 280
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 3 cut(s) 164, 195, 385
Sau3AI GATC 2 cut(s) 304, 340
SchI GAGTC 1 cut(s) 244
SduI GDGCHC 2 cut(s) 280, 374
SetI ASST 3 cut(s) 149, 280, 371
SfaNI GCATC 1 cut(s) 36
Sse9I AATT 2 cut(s) 161, 242
SstI GAGCTC 1 cut(s) 280
TaaI ACNGT 1 cut(s) 182
TasI AATT 2 cut(s) 161, 242
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 2 cut(s) 106, 140
Tru1I TTAA 3 cut(s) 164, 195, 385
Tru9I TTAA 3 cut(s) 164, 195, 385
TspDTI ATGAA 2 cut(s) 300, 319
XapI RAATTY 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.