pycom17g27470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000990
Physical Location & Seq
Reverse (-)
25630409 .. 25631567
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g27470.3

Sequence Viewer

Length: 774 bp
ATGTTTCGGAGGCAGGAGAGGGTCATTCGACGTTCTATATATGAATTGGATGCTGATGATGCAGTTAGCATTAACATGTGGGTAGAAAACCATCAGAGTCATGTTTTCTTCTATGAGGATTTCTCTGACGTGGACCCCTTAACTTTGGGCATTCAAACAGAGTGGCAGTTGCAACAGATGATTCGCTTTGGCAATCACAGCCTTATAGCTTCTGATTCAAGGTTCGGAACAACCAAATTGAAGGTCCGTTTAGTTTGTTCACCCTCTTATTATCAACTACAGTTGTTAATAGTAATAATGAGAAACATAATTAGTTCTTGTTGCAACGTTATTTATCTCCTTGTATTTAATGAGGACAACAAGGTCATTCCGGTAGCATGGATAGTTGCTCCAAAGTTTGAAAGTTCCAATGCCCATAAATGGATGAGAGCTTTTTACAATAGAGATCAATCTATCGATCCTGCATGGAATTTAGCTGGTTTCATAGTGGATGATCCTCTAGCTGATGTGCTTACCATCAGGTTGGTTGCTCAGTCCTCGTCCATGATGATAAGCTTTTGGCAGGTTCGTCATGCAATGAGTAAAGACAATGAGATGCAAGCTACAACGTCAAGGAGATGCAAGCTACAACGTCAAGGAGGCTTCATCAGGGATGTGGATTTCTGCACTACAAAATCTTCTCTTGCTAGCCAGGAAACCTCTGCGGCAATGGAGTTCTACCACAACCAACTAAAGCTTAGGCTATTGAACATGTTCATGTTGCAACATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

30.04

Weight (kDa)

7.69

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 553
AciI CCGC 1 cut(s) 704
AclI AACGTT 1 cut(s) 327
AclWI GGATC 2 cut(s) 452, 488
AcsI RAATTY 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 420
AflIII ACRYGT 2 cut(s) 75, 750
AgsI TTSAA 5 cut(s) 155, 219, 241, 401, 748
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 690
AluBI AGCT 8 cut(s) 209, 431, 476, 503, 555, 602, 625, 736
AluI AGCT 8 cut(s) 209, 431, 476, 503, 555, 602, 625, 736
AlwI GGATC 2 cut(s) 452, 488
ApoI RAATTY 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 228, 260
Asp700I GAANNNNTTC 1 cut(s) 752
AspS9I GGNCC 2 cut(s) 133, 244
AsuHPI GGTGA 1 cut(s) 252
AsuNHI GCTAGC 1 cut(s) 686
AvaII GGWCC 2 cut(s) 133, 244
BccI CCATC 2 cut(s) 99, 524
BciT130I CCWGG 1 cut(s) 692
BfaI CTAG 2 cut(s) 500, 687
BfmI CTRYAG 1 cut(s) 278
BfuAI ACCTGC 1 cut(s) 553
BisI GCNGC 1 cut(s) 705
BlsI GCNGC 1 cut(s) 706
Bme1390I CCNGG 1 cut(s) 692
Bme18I GGWCC 2 cut(s) 133, 244
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 2 cut(s) 133, 244
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 692
BmsI GCATC 4 cut(s) 40, 49, 585, 608
BmtI GCTAGC 1 cut(s) 690
BplI GAGNNNNNCTC 2 cut(s) 107, 139
Bpu10I CCTNAGC 1 cut(s) 737
Bsa29I ATCGAT 1 cut(s) 456
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse3DI GCAATG 2 cut(s) 582, 714
BseBI CCWGG 1 cut(s) 692
BseCI ATCGAT 1 cut(s) 456
BseGI GGATG 4 cut(s) 55, 429, 496, 658
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 2 cut(s) 582, 714
BseMII CTCAG 1 cut(s) 545
BsgI GTGCAG 1 cut(s) 649
BshVI ATCGAT 1 cut(s) 456
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 420
BsmI GAATGC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 445, 457, 493
BspACI CCGC 1 cut(s) 704
BspCNI CTCAG 1 cut(s) 544
BspDI ATCGAT 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 1 cut(s) 553
BspOI GCTAGC 1 cut(s) 690
BspPI GGATC 2 cut(s) 452, 488
BsrDI GCAATG 2 cut(s) 582, 714
BssMI GATC 3 cut(s) 445, 457, 493
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 600, 623, 688
BstDEI CTNAG 2 cut(s) 531, 737
BstF5I GGATG 4 cut(s) 55, 429, 496, 658
BstKTI GATC 3 cut(s) 448, 460, 496
BstMBI GATC 3 cut(s) 445, 457, 493
BstMWI GCNNNNNNNGC 2 cut(s) 59, 198
BstNI CCWGG 1 cut(s) 692
BstNSI RCATGY 2 cut(s) 79, 754
BstSCI CCNGG 1 cut(s) 690
BstSFI CTRYAG 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 523
Bsu15I ATCGAT 1 cut(s) 456
BsuTUI ATCGAT 1 cut(s) 456
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 4 cut(s) 55, 429, 496, 658
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 3 cut(s) 600, 623, 688
Cfr13I GGNCC 2 cut(s) 133, 244
ClaI ATCGAT 1 cut(s) 456
CspCI CAANNNNNGTGG 2 cut(s) 143, 178
CviAII CATG 8 cut(s) 76, 101, 378, 465, 544, 572, 751, 757
DdeI CTNAG 2 cut(s) 531, 737
DpnI GATC 3 cut(s) 447, 459, 495
DpnII GATC 3 cut(s) 445, 457, 493
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 133, 244
EcoRII CCWGG 1 cut(s) 690
FaeI CATG 8 cut(s) 79, 104, 381, 468, 547, 575, 754, 760
FatI CATG 8 cut(s) 75, 100, 377, 464, 543, 571, 750, 756
Fnu4HI GCNGC 1 cut(s) 705
FokI GGATG 4 cut(s) 62, 436, 503, 665
Fsp4HI GCNGC 1 cut(s) 705
FspBI CTAG 2 cut(s) 500, 687
GluI GCNGC 1 cut(s) 705
HapII CCGG 1 cut(s) 371
Hin1II CATG 8 cut(s) 79, 104, 381, 468, 547, 575, 754, 760
HindIII AAGCTT 2 cut(s) 553, 734
HinfI GANTC 3 cut(s) 97, 181, 215
HpaII CCGG 1 cut(s) 371
HphI GGTGA 1 cut(s) 252
Hpy166II GTNNAC 2 cut(s) 133, 260
Hpy188I TCNGA 5 cut(s) 9, 96, 127, 214, 227
Hpy8I GTNNAC 2 cut(s) 133, 260
Hpy99I CGWCG 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 5 cut(s) 31, 129, 327, 608, 631
HpyCH4V TGCA 9 cut(s) 62, 172, 324, 464, 575, 598, 621, 666, 763
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 198
HpyF3I CTNAG 2 cut(s) 531, 737
HpySE526I ACGT 5 cut(s) 31, 129, 327, 608, 631
Hsp92II CATG 8 cut(s) 79, 104, 381, 468, 547, 575, 754, 760
Kzo9I GATC 3 cut(s) 445, 457, 493
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 8 cut(s) 384, 462, 474, 505, 548, 634, 677, 704
LweI GCATC 4 cut(s) 40, 49, 585, 608
MaeI CTAG 2 cut(s) 500, 687
MaeII ACGT 5 cut(s) 31, 129, 327, 608, 631
MalI GATC 3 cut(s) 447, 459, 495
MboI GATC 3 cut(s) 445, 457, 493
MboII GAAGA 2 cut(s) 100, 669
MluCI AATT 4 cut(s) 44, 236, 309, 469
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 9 cut(s) 3, 12, 109, 274, 346, 507, 547, 632, 709
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 4 cut(s) 72, 140, 287, 348
MslI CAYNNNNRTG 2 cut(s) 74, 755
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 692
Mva1269I GAATGC 1 cut(s) 150
MvaI CCWGG 1 cut(s) 692
MwoI GCNNNNNNNGC 2 cut(s) 59, 198
NdeII GATC 3 cut(s) 445, 457, 493
NheI GCTAGC 1 cut(s) 686
NlaIII CATG 8 cut(s) 79, 104, 381, 468, 547, 575, 754, 760
NlaIV GGNNCC 1 cut(s) 135
NspI RCATGY 2 cut(s) 79, 754
PciI ACATGT 2 cut(s) 75, 750
PctI GAATGC 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 2 cut(s) 181, 215
PkrI GCNGC 1 cut(s) 706
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PscI ACATGT 2 cut(s) 75, 750
Psp1406I AACGTT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 690
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 133, 244
RseI CAYNNNNRTG 2 cut(s) 74, 755
SaqAI TTAA 4 cut(s) 72, 140, 287, 348
SatI GCNGC 1 cut(s) 705
Sau3AI GATC 3 cut(s) 445, 457, 493
Sau96I GGNCC 2 cut(s) 133, 244
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 692
SfaNI GCATC 4 cut(s) 40, 49, 585, 608
SfcI CTRYAG 1 cut(s) 278
SinI GGWCC 2 cut(s) 133, 244
SmiMI CAYNNNNRTG 2 cut(s) 74, 755
Sse9I AATT 4 cut(s) 44, 236, 309, 469
SsiI CCGC 1 cut(s) 704
SspMI CTAG 2 cut(s) 500, 687
StyD4I CCNGG 1 cut(s) 690
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 5 cut(s) 34, 132, 330, 611, 634
TaqI TCGA 2 cut(s) 28, 456
TasI AATT 4 cut(s) 44, 236, 309, 469
TauI GCSGC 1 cut(s) 707
TfiI GAWTC 2 cut(s) 181, 215
Tru1I TTAA 4 cut(s) 72, 140, 287, 348
Tru9I TTAA 4 cut(s) 72, 140, 287, 348
TspDTI ATGAA 4 cut(s) 57, 472, 634, 745
TspGWI ACGGA 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 133, 244
XapI RAATTY 1 cut(s) 469
XceI RCATGY 2 cut(s) 79, 754
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 2 cut(s) 500, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.