Rh5AG537000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000990
Physical Location & Seq
Reverse (-)
92271696 .. 92276955
5260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG537000.1

Sequence Viewer

Length: 1266 bp
ATGATTTTGGGGAAGGTAGAGGTGACTTCAATTGAGATGGCTAGATGGGATGAGATTCTGTCTCTTCCTGTACAGAATCCTCCGACTTTGGAGTTTTCTGCTGCTGATCTTGTGTGGTCGAAGGTGAAAGGTTGGCGTGACAAGAAAGATAGAGTTGCTGTAATCCCCTATGCCAGAGTTGATGCTTTTGTGAGGGGTGAATCTTCGAACAAAGAGTGTCCGACGAGATTTCATGTTGAAGCGAGGCGGCGGCGGCAGGCAAAGACGAATTGCAAACCAAAGGTTGATGGCATCCTTGAATATATTCTATATTGGTGTTCTTTTGGTCCTGATGACCACGGGATGGGCGGCTCTATACGACCCAGTAGGACTAATTATGTCCCAAAGAAGAAAAATTCTGGTCGACCAAACACCAAGAGAGGTTGTACCTGCCACTTTATGGTGAAACGCTTAATTGCTGAACCGTCAGTAGCGCTTCTTGTATATAATTCTGTTAAGCATGTGGATAAGAAAGGATTGCCATGCCATGGCCCAGAAGATAAGATGGCTGCTGGAACACGCGCTATGTTTGCCCCATACATCTCTGAGGATCTACGCCTTCGTGTGCTATCTTTGCTATATGTGGGGGTCTCCGTGGAGATCATAATGCAGAGACACACTGAATCCGTAGAGAGACAGGGTGGTCCATGTAATCGTGATGACCTCTTAACCCATAGGTACGTTCGCAGACAGAAGAGGATCATTCGACGTTCTACGTATGAATTGGATGCGGATGACGCAGTTAGCATCAGCATGTGGGTGGAAAACCATCAGACTAGCATTTTCTTCTATGAGGATTTCTCTGAGACGTACCCTTTCACTTTGGGCATTCAAACAGACTGGCAGCTGCAACAGATGATTCGCTTTGGCAATCACAGCCTTGTAGCCTCTGATTCAAGGTTCGGAACAAACAAATTAAAGTATCCTGTTCACAGTCTCCTTGTATTTAACCAAGACAACAAGGCCATTCCAGTAGCATGGATGGTGAATCCAAAATTTGCAAGTTCTGATACCCGTAAATGGATGAGAGCTCTTTACAATAGAGTTCAGACGAAAGATCCTTTATGGAAGTTGGCTGGGTTCATAGTGGATGATCCTCAGGCTGATGTACACACTATCAGTTCTGTTCTTGACAAATATGCGGACAAGGATGAAGATGATCACGAGCCAATATCAACTGATGAAGATGAGGACCCCAGTTCCTTCGATGAAGATGATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

48.37

Weight (kDa)

7.18

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 437
AccB7I CCANNNNNTGG 3 cut(s) 343, 439, 527
AccI GTMKAC 1 cut(s) 403
AccII CGCG 1 cut(s) 561
AciI CCGC 6 cut(s) 247, 250, 253, 348, 770, 1181
AclWI GGATC 4 cut(s) 597, 746, 1091, 1127
AcsI RAATTY 2 cut(s) 394, 1034
AfaI GTAC 5 cut(s) 72, 427, 719, 851, 1149
AfeI AGCGCT 1 cut(s) 474
AfiI CCNNNNNNNGG 4 cut(s) 343, 439, 527, 1059
AgsI TTSAA 5 cut(s) 30, 239, 299, 872, 936
AluBI AGCT 2 cut(s) 886, 1070
AluI AGCT 2 cut(s) 886, 1070
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 6 cut(s) 66, 634, 646, 667, 839, 980
AlwI GGATC 4 cut(s) 597, 746, 1091, 1127
Aor51HI AGCGCT 1 cut(s) 474
AoxI GGCC 2 cut(s) 529, 1002
ApeKI GCWGC 4 cut(s) 101, 548, 883, 886
ApoI RAATTY 2 cut(s) 394, 1034
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 2 cut(s) 475, 563
AspS9I GGNCC 4 cut(s) 326, 530, 683, 1231
AsuHPI GGTGA 5 cut(s) 34, 136, 209, 454, 1036
AsuII TTCGAA 1 cut(s) 206
AvaII GGWCC 3 cut(s) 326, 683, 1231
AxyI CCTNAGG 1 cut(s) 1137
BanII GRGCYC 1 cut(s) 1072
BauI CACGAG 1 cut(s) 1202
Bbv12I GWGCWC 1 cut(s) 1072
BbvI GCAGC 4 cut(s) 88, 535, 873, 895
BccI CCATC 7 cut(s) 31, 39, 281, 337, 538, 816, 1015
BciVI GTATCC 1 cut(s) 972
BclI TGATCA 1 cut(s) 1198
BcoDI GTCTC 6 cut(s) 66, 634, 646, 667, 839, 980
BfaI CTAG 2 cut(s) 42, 816
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 437
BfuI GTATCC 1 cut(s) 972
BisI GCNGC 8 cut(s) 102, 248, 251, 254, 349, 549, 884, 887
BlsI GCNGC 8 cut(s) 103, 249, 252, 255, 350, 550, 885, 888
Bme18I GGWCC 3 cut(s) 326, 683, 1231
BmgT120I GGNCC 4 cut(s) 326, 530, 683, 1231
BmiI GGNNCC 1 cut(s) 1233
BmrI ACTGGG 2 cut(s) 357, 1230
BmsI GCATC 4 cut(s) 172, 300, 757, 795
BmuI ACTGGG 2 cut(s) 357, 1230
BplI GAGNNNNNCTC 2 cut(s) 824, 856
Bpu14I TTCGAA 1 cut(s) 206
BsaAI YACGTR 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 3 cut(s) 337, 526, 633
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 439, 527, 1059
Bse1I ACTGG 4 cut(s) 363, 884, 1010, 1236
Bse21I CCTNAGG 1 cut(s) 1137
BseDI CCNNGG 3 cut(s) 337, 526, 633
BseGI GGATG 9 cut(s) 55, 291, 348, 772, 778, 1026, 1068, 1135, 1195
BseLI CCNNNNNNNGG 4 cut(s) 343, 439, 527, 1059
BseMII CTCAG 3 cut(s) 576, 834, 1151
BseNI ACTGG 4 cut(s) 363, 884, 1010, 1236
BseXI GCAGC 4 cut(s) 88, 535, 873, 895
BseYI CCCAGC 1 cut(s) 1115
Bsh1236I CGCG 1 cut(s) 561
BshFI GGCC 2 cut(s) 531, 1004
BsiHKAI GWGCWC 1 cut(s) 1072
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 4 cut(s) 343, 439, 527, 1059
BsmAI GTCTC 6 cut(s) 66, 634, 646, 667, 839, 980
BsmBI CGTCTC 1 cut(s) 839
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 2 cut(s) 531, 1004
Bso31I GGTCTC 1 cut(s) 634
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 1072
Bsp1407I TGTACA 2 cut(s) 70, 1147
Bsp143I GATC 7 cut(s) 106, 589, 639, 738, 1096, 1132, 1198
Bsp19I CCATGG 1 cut(s) 526
BspACI CCGC 6 cut(s) 247, 250, 253, 348, 770, 1181
BspANI GGCC 2 cut(s) 531, 1004
BspCNI CTCAG 3 cut(s) 577, 835, 1150
BspFNI CGCG 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 1233
BspMI ACCTGC 1 cut(s) 437
BspPI GGATC 4 cut(s) 597, 746, 1091, 1127
BspT104I TTCGAA 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 634
BsrGI TGTACA 2 cut(s) 70, 1147
BsrI ACTGG 4 cut(s) 363, 884, 1010, 1236
BssECI CCNNGG 3 cut(s) 337, 526, 633
BssMI GATC 7 cut(s) 106, 589, 639, 738, 1096, 1132, 1198
BssSI CACGAG 1 cut(s) 1202
BssT1I CCWWGG 1 cut(s) 526
Bst2BI CACGAG 1 cut(s) 1202
Bst4CI ACNGT 2 cut(s) 465, 974
Bst6I CTCTTC 2 cut(s) 69, 728
BstAUI TGTACA 2 cut(s) 70, 1147
BstBAI YACGTR 1 cut(s) 756
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 585, 843, 1137
BstDSI CCRYGG 3 cut(s) 337, 526, 633
BstF5I GGATG 9 cut(s) 55, 291, 348, 772, 778, 1026, 1068, 1135, 1195
BstFNI CGCG 1 cut(s) 561
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 2 cut(s) 475, 563
BstKTI GATC 7 cut(s) 109, 592, 642, 741, 1099, 1135, 1201
BstMAI GTCTC 6 cut(s) 66, 634, 646, 667, 839, 980
BstMBI GATC 7 cut(s) 106, 589, 639, 738, 1096, 1132, 1198
BstMWI GCNNNNNNNGC 5 cut(s) 253, 569, 613, 776, 915
BstNSI RCATGY 2 cut(s) 503, 796
BstSNI TACGTA 1 cut(s) 756
BstUI CGCG 1 cut(s) 561
BstV1I GCAGC 4 cut(s) 88, 535, 873, 895
BstX2I RGATCY 2 cut(s) 589, 1096
BstXI CCANNNNNNTGG 1 cut(s) 1017
BstYI RGATCY 2 cut(s) 589, 1096
Bsu36I CCTNAGG 1 cut(s) 1137
BsuI GTATCC 1 cut(s) 972
BsuRI GGCC 2 cut(s) 531, 1004
BtgI CCRYGG 3 cut(s) 337, 526, 633
BtsCI GGATG 9 cut(s) 55, 291, 348, 772, 778, 1026, 1068, 1135, 1195
BtsIMutI CAGTG 1 cut(s) 657
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 2 cut(s) 475, 563
Cfr13I GGNCC 4 cut(s) 326, 530, 683, 1231
CseI GACGC 1 cut(s) 785
Csp6I GTAC 5 cut(s) 71, 426, 718, 850, 1148
CviAII CATG 7 cut(s) 233, 500, 522, 527, 687, 793, 1017
CviQI GTAC 5 cut(s) 71, 426, 718, 850, 1148
DdeI CTNAG 3 cut(s) 585, 843, 1137
DpnI GATC 7 cut(s) 108, 591, 641, 740, 1098, 1134, 1200
DpnII GATC 7 cut(s) 106, 589, 639, 738, 1096, 1132, 1198
DrdI GACNNNNNNGTC 1 cut(s) 681
DseDI GACNNNNNNGTC 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 69, 728
EarI CTCTTC 2 cut(s) 69, 728
Ecl136II GAGCTC 1 cut(s) 1070
Eco105I TACGTA 1 cut(s) 756
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 1072
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 3 cut(s) 326, 683, 1231
Eco47III AGCGCT 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 1070
Eco81I CCTNAGG 1 cut(s) 1137
EcoICRI GAGCTC 1 cut(s) 1070
EcoO109I RGGNCCY 1 cut(s) 1231
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 1072
ErhI CCWWGG 1 cut(s) 526
Esp3I CGTCTC 1 cut(s) 839
FaeI CATG 7 cut(s) 236, 503, 525, 530, 690, 796, 1020
FaqI GGGAC 1 cut(s) 365
FatI CATG 7 cut(s) 232, 499, 521, 526, 686, 792, 1016
FbaI TGATCA 1 cut(s) 1198
FblI GTMKAC 1 cut(s) 403
Fnu4HI GCNGC 8 cut(s) 102, 248, 251, 254, 349, 549, 884, 887
FokI GGATG 9 cut(s) 62, 278, 355, 779, 785, 1033, 1075, 1142, 1202
FriOI GRGCYC 1 cut(s) 1072
Fsp4HI GCNGC 8 cut(s) 102, 248, 251, 254, 349, 549, 884, 887
FspBI CTAG 2 cut(s) 42, 816
GlaI GCGC 2 cut(s) 474, 562
GluI GCNGC 8 cut(s) 102, 248, 251, 254, 349, 549, 884, 887
GsaI CCCAGC 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 2 cut(s) 531, 1004
HgaI GACGC 1 cut(s) 785
HhaI GCGC 2 cut(s) 475, 563
Hin1II CATG 7 cut(s) 236, 503, 525, 530, 690, 796, 1020
Hin6I GCGC 2 cut(s) 473, 561
HinP1I GCGC 2 cut(s) 473, 561
HincII GTYRAC 1 cut(s) 404
HindII GTYRAC 1 cut(s) 404
HinfI GANTC 7 cut(s) 55, 76, 200, 662, 898, 932, 1027
HphI GGTGA 5 cut(s) 34, 136, 209, 454, 1036
Hpy166II GTNNAC 3 cut(s) 404, 970, 1150
Hpy188I TCNGA 9 cut(s) 84, 222, 586, 813, 844, 931, 944, 1048, 1089
Hpy188III TCNNGA 4 cut(s) 329, 695, 1169, 1202
Hpy8I GTNNAC 3 cut(s) 404, 970, 1150
Hpy99I CGWCG 2 cut(s) 226, 750
HpyAV CCTTC 4 cut(s) 7, 115, 608, 1252
HpyCH4III ACNGT 2 cut(s) 465, 974
HpyCH4IV ACGT 4 cut(s) 720, 748, 755, 848
HpyCH4V TGCA 4 cut(s) 273, 649, 889, 1040
HpyF10VI GCNNNNNNNGC 5 cut(s) 253, 569, 613, 776, 915
HpyF3I CTNAG 3 cut(s) 585, 843, 1137
HpySE526I ACGT 4 cut(s) 720, 748, 755, 848
Hsp92II CATG 7 cut(s) 236, 503, 525, 530, 690, 796, 1020
HspAI GCGC 2 cut(s) 473, 561
Ksp22I TGATCA 1 cut(s) 1198
Kzo9I GATC 7 cut(s) 106, 589, 639, 738, 1096, 1132, 1198
Lsp1109I GCAGC 4 cut(s) 88, 535, 873, 895
LweI GCATC 4 cut(s) 172, 300, 757, 795
MaeI CTAG 2 cut(s) 42, 816
MaeII ACGT 4 cut(s) 720, 748, 755, 848
MaeIII GTNAC 2 cut(s) 22, 137
MalI GATC 7 cut(s) 108, 591, 641, 740, 1098, 1134, 1200
MboI GATC 7 cut(s) 106, 589, 639, 738, 1096, 1132, 1198
MboII GAAGA 9 cut(s) 56, 195, 400, 548, 745, 817, 1205, 1235, 1262
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 2 cut(s) 589, 1096
MhlI GDGCHC 1 cut(s) 1072
MmeI TCCRAC 2 cut(s) 107, 245
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 6 cut(s) 452, 495, 707, 956, 987, 1264
MslI CAYNNNNRTG 2 cut(s) 791, 797
MspA1I CMGCKG 1 cut(s) 886
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 867
MvnI CGCG 1 cut(s) 561
MwoI GCNNNNNNNGC 5 cut(s) 253, 569, 613, 776, 915
NcoI CCATGG 1 cut(s) 526
NdeII GATC 7 cut(s) 106, 589, 639, 738, 1096, 1132, 1198
NlaIII CATG 7 cut(s) 236, 503, 525, 530, 690, 796, 1020
NlaIV GGNNCC 1 cut(s) 1233
NmuCI GTSAC 2 cut(s) 22, 137
NspI RCATGY 2 cut(s) 503, 796
NspV TTCGAA 1 cut(s) 206
PctI GAATGC 1 cut(s) 867
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 7 cut(s) 55, 76, 200, 662, 898, 932, 1027
PflMI CCANNNNNTGG 3 cut(s) 343, 439, 527
PkrI GCNGC 8 cut(s) 103, 249, 252, 255, 350, 550, 885, 888
Ppu21I YACGTR 1 cut(s) 756
PpuMI RGGWCCY 1 cut(s) 1231
Psp124BI GAGCTC 1 cut(s) 1072
Psp5II RGGWCCY 1 cut(s) 1231
PspFI CCCAGC 1 cut(s) 1115
PspN4I GGNNCC 1 cut(s) 1233
PspPI GGNCC 4 cut(s) 326, 530, 683, 1231
PspPPI RGGWCCY 1 cut(s) 1231
PsuI RGATCY 2 cut(s) 589, 1096
PvuII CAGCTG 1 cut(s) 886
RsaI GTAC 5 cut(s) 72, 427, 719, 851, 1149
RsaNI GTAC 5 cut(s) 71, 426, 718, 850, 1148
RseI CAYNNNNRTG 2 cut(s) 791, 797
SacI GAGCTC 1 cut(s) 1072
SalI GTCGAC 1 cut(s) 402
SaqAI TTAA 6 cut(s) 452, 495, 707, 956, 987, 1264
SatI GCNGC 8 cut(s) 102, 248, 251, 254, 349, 549, 884, 887
Sau3AI GATC 7 cut(s) 106, 589, 639, 738, 1096, 1132, 1198
Sau96I GGNCC 4 cut(s) 326, 530, 683, 1231
SduI GDGCHC 1 cut(s) 1072
SfaNI GCATC 4 cut(s) 172, 300, 757, 795
SfuI TTCGAA 1 cut(s) 206
SinI GGWCC 3 cut(s) 326, 683, 1231
SmiMI CAYNNNNRTG 2 cut(s) 791, 797
SnaBI TACGTA 1 cut(s) 756
SsiI CCGC 6 cut(s) 247, 250, 253, 348, 770, 1181
SspMI CTAG 2 cut(s) 42, 816
SstI GAGCTC 1 cut(s) 1072
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 465, 974
TaiI ACGT 4 cut(s) 723, 751, 758, 851
TaqI TCGA 5 cut(s) 119, 206, 403, 745, 1245
TatI WGTACW 2 cut(s) 70, 1147
TauI GCSGC 4 cut(s) 250, 253, 256, 351
TfiI GAWTC 7 cut(s) 55, 76, 200, 662, 898, 932, 1027
Tru1I TTAA 6 cut(s) 452, 495, 707, 956, 987, 1264
Tru9I TTAA 6 cut(s) 452, 495, 707, 956, 987, 1264
TscAI CASTG 1 cut(s) 664
TseFI GTSAC 2 cut(s) 22, 137
TseI GCWGC 4 cut(s) 101, 548, 883, 886
Tsp45I GTSAC 2 cut(s) 22, 137
TspDTI ATGAA 6 cut(s) 221, 774, 1111, 1206, 1236, 1263
TspGWI ACGGA 2 cut(s) 622, 655
TspRI CASTG 1 cut(s) 664
Van91I CCANNNNNTGG 3 cut(s) 343, 439, 527
VpaK11BI GGWCC 3 cut(s) 326, 683, 1231
XapI RAATTY 2 cut(s) 394, 1034
XceI RCATGY 2 cut(s) 503, 796
XmiI GTMKAC 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 2 cut(s) 42, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.