Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

8418242 .. 8419325

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCAACGGCGTCGTTTAACATGCAGTCAGTGTTCGCTGCTCCTTCCGGTGTATTGACTACACGCAACATCAGAAACACAAACCAACTCTTCTTCAAGAGGATTGCTCCGGTAGGAGTCAGATGCATGGCTCAGGGCGATCCTATCAAGGAAGATCCTTCTGTGCCCTCGACCTCGACTTCGGCCACTCCACCACAAATGCCACAGTCTCCTCCTCCACCAGTTAGCAAGCCTAAGGTGAGTACGAAGTTTGGAGATTTGCTAGCGTTTAGCGGTCCAGCACCCGAGAGGATCAACGGGAGACTAGCAATGGTTGGATTCGTGGCGGCCATCGCCATGGAGTTATCAAAGGGAGAAAACGTGTTTGCTCAGATCTCTGACGGTGGTGTCGGGTGGTTTCTAGGAACAACAGCGTTGTTGACGTTGGCATCGATGGTTCCGTTGTTCAAGGGAATAAGGGCAGAGGCAAAGTCAAAAGGGTTCATGACTTCAGACGCCGAGCTATGGAACGGTCGGTTTGCGATGCTCGGTCTCGTTGCGTTGGCCTTCACCGAGTACGTCACTGGTGGGACTCTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

193

Amino Acids

20.34

Weight (kDa)

9.66

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	94 - 185	1.5e-07	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
AciI	CCGC	2 cut(s)	273, 326
AclWI	GGATC	3 cut(s)	134, 149, 299
AcoI	YGGCCR	2 cut(s)	183, 327
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	11, 495
AfaI	GTAC	2 cut(s)	244, 557
AfiI	CCNNNNNNNGG	1 cut(s)	504
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	97, 448
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
Alw26I	GTCTC	3 cut(s)	213, 295, 536
AlwI	GGATC	3 cut(s)	134, 149, 299
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	3 cut(s)	183, 327, 543
ApeKI	GCWGC	1 cut(s)	38
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	250, 541
AsuNHI	GCTAGC	1 cut(s)	262
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	338, 427
BceAI	ACGGC	1 cut(s)	24
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcoDI	GTCTC	3 cut(s)	213, 295, 536
BfaI	CTAG	4 cut(s)	263, 305, 401, 575
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	2 cut(s)	39, 327
BlsI	GCNGC	2 cut(s)	40, 328
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	438
BmsI	GCATC	3 cut(s)	113, 437, 513
BmtI	GCTAGC	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	575
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	132
Bsa29I	ATCGAT	1 cut(s)	431
BsaHI	GRCGYC	2 cut(s)	11, 495
BsaI	GGTCTC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	2 cut(s)	47, 109
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	2 cut(s)	221, 568
Bse21I	CCTNAGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	146, 383
BseNI	ACTGG	2 cut(s)	221, 568
BseRI	GAGGAG	2 cut(s)	201, 204
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	514
BshFI	GGCC	3 cut(s)	185, 329, 545
BshVI	ATCGAT	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	48, 110
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	3 cut(s)	213, 295, 536
BsnI	GGCC	3 cut(s)	185, 329, 545
Bso31I	GGTCTC	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	139, 154, 291, 372
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	273, 326
BspANI	GGCC	3 cut(s)	185, 329, 545
BspCNI	CTCAG	2 cut(s)	145, 382
BspDI	ATCGAT	1 cut(s)	431
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	438
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	134, 149, 299
BspTNI	GGTCTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	221, 568
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	4 cut(s)	139, 154, 291, 372
BssNI	GRCGYC	2 cut(s)	11, 495
BssT1I	CCWWGG	1 cut(s)	336
Bst4CI	ACNGT	3 cut(s)	207, 383, 512
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	2 cut(s)	11, 495
BstC8I	GCNNGC	2 cut(s)	230, 264
BstDEI	CTNAG	3 cut(s)	132, 234, 369
BstDSI	CCRYGG	1 cut(s)	336
BstKTI	GATC	4 cut(s)	142, 157, 294, 375
BstMAI	GTCTC	3 cut(s)	213, 295, 536
BstMBI	GATC	4 cut(s)	139, 154, 291, 372
BstMCI	CGRYCG	1 cut(s)	514
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	25
BstPAI	GACNNNNGTC	1 cut(s)	575
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	154, 372
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	2 cut(s)	154, 372
Bsu15I	ATCGAT	1 cut(s)	431
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	185, 329, 545
BsuTUI	ATCGAT	1 cut(s)	431
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	2 cut(s)	316, 536
BtsIMutI	CAGTG	2 cut(s)	36, 561
Cac8I	GCNNGC	2 cut(s)	230, 264
CciI	TCATGA	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	431
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	2 cut(s)	243, 556
CviAII	CATG	4 cut(s)	22, 127, 337, 484
CviJI	RGCY	6 cut(s)	131, 185, 232, 329, 502, 545
CviKI_1	RGCY	6 cut(s)	131, 185, 232, 329, 502, 545
CviQI	GTAC	2 cut(s)	243, 556
DdeI	CTNAG	3 cut(s)	132, 234, 369
DpnI	GATC	4 cut(s)	141, 156, 293, 374
DpnII	GATC	4 cut(s)	139, 154, 291, 372
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
EaeI	YGGCCR	2 cut(s)	183, 327
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	474
Eco81I	CCTNAGG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	4 cut(s)	25, 130, 340, 487
FaiI	YATR	5 cut(s)	23, 128, 338, 485, 505
FatI	CATG	4 cut(s)	21, 126, 336, 483
Fnu4HI	GCNGC	2 cut(s)	39, 327
Fsp4HI	GCNGC	2 cut(s)	39, 327
FspBI	CTAG	4 cut(s)	263, 305, 401, 575
GluI	GCNGC	2 cut(s)	39, 327
HaeIII	GGCC	3 cut(s)	185, 329, 545
HapII	CCGG	2 cut(s)	48, 110
HgaI	GACGC	1 cut(s)	503
Hin1I	GRCGYC	2 cut(s)	11, 495
Hin1II	CATG	4 cut(s)	25, 130, 340, 487
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	117, 318, 571
HpaII	CCGG	2 cut(s)	48, 110
HphI	GGTGA	2 cut(s)	250, 541
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	5 cut(s)	74, 122, 372, 379, 493
Hpy188III	TCNNGA	2 cut(s)	97, 484
Hpy8I	GTNNAC	1 cut(s)	420
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	54, 168, 556
HpyCH4III	ACNGT	3 cut(s)	207, 383, 512
HpyCH4IV	ACGT	3 cut(s)	360, 422, 558
HpyCH4V	TGCA	2 cut(s)	25, 126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	132, 234, 369
HpySE526I	ACGT	3 cut(s)	360, 422, 558
Hsp92I	GRCGYC	2 cut(s)	11, 495
Hsp92II	CATG	4 cut(s)	25, 130, 340, 487
Kzo9I	GATC	4 cut(s)	139, 154, 291, 372
LmnI	GCTCC	2 cut(s)	46, 112
LpnPI	CCDG	6 cut(s)	61, 119, 123, 234, 291, 549
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	3 cut(s)	113, 437, 513
MaeI	CTAG	4 cut(s)	263, 305, 401, 575
MaeII	ACGT	3 cut(s)	360, 422, 558
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	4 cut(s)	141, 156, 293, 374
MboI	GATC	4 cut(s)	139, 154, 291, 372
MboII	GAAGA	3 cut(s)	82, 85, 164
MflI	RGATCY	2 cut(s)	154, 372
MhlI	GDGCHC	1 cut(s)	168
MlyI	GAGTC	2 cut(s)	126, 565
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	93, 178, 184, 222, 225, 282, 457
Mph1103I	ATGCAT	1 cut(s)	128
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	48, 110
MwoI	GCNNNNNNNGC	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	4 cut(s)	139, 154, 291, 372
NheI	GCTAGC	1 cut(s)	262
NlaIII	CATG	4 cut(s)	25, 130, 340, 487
NlaIV	GGNNCC	1 cut(s)	438
NmeAIII	GCCGAG	1 cut(s)	523
NmuCI	GTSAC	1 cut(s)	559
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	1 cut(s)	25
PagI	TCATGA	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	2 cut(s)	428, 437
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	2 cut(s)	40, 328
PleI	GAGTC	2 cut(s)	125, 565
PpsI	GAGTC	2 cut(s)	125, 565
PshAI	GACNNNNGTC	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	154, 372
RsaI	GTAC	2 cut(s)	244, 557
RsaNI	GTAC	2 cut(s)	243, 556
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	39, 327
Sau3AI	GATC	4 cut(s)	139, 154, 291, 372
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	126, 565
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	176, 240, 363, 425, 504, 561
SfaNI	GCATC	3 cut(s)	113, 437, 513
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	335
SsiI	CCGC	2 cut(s)	273, 326
SspMI	CTAG	4 cut(s)	263, 305, 401, 575
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	207, 383, 512
TaiI	ACGT	3 cut(s)	363, 425, 561
TaqI	TCGA	3 cut(s)	170, 176, 431
TaqII	GACCGA	1 cut(s)	518
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	2 cut(s)	36, 568
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	472
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	2 cut(s)	36, 568
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	1 cut(s)	25
XspI	CTAG	4 cut(s)	263, 305, 401, 575
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.