Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

7796992 .. 7797790

Gene Structure 799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG101000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTTCTGCTGTTCCTTATGCTCCAAGCTATCTGCATAGGTTTCACCCATGCCATGATGATGGTACGCTCCATGGCCGAGGATGGTCAGAAGGAGCAACAGACCAGTGTATATAGTACATTAGAAAGTTCACAGAAATCAGCTCCTTCATCACCTCTTCCTCCTCGATCTCCTAAGGTCAGCACAAAGTTTTCAGACGGGTTTACATTTAGTGGACCGGCGCCGGAGAGAATGAACGGCAGGCTAGCAATGGTGAGCTTTGTGGCGGCTCTAGCAGTCGAACTATCCAAGGGCCAAGATGTGTTTGCTCAGTTATCCAACGGCGGAATCCCATTGTTCCTTGGCACCAGTATTTTGCTATCAGTGGCATCTTTGATTCCATTGTTGAAGGGTGTGACTGTAGAGTCCAAATCAAAAGGGTTGATGACCTCAGATGCTGAGGTATGGAATGGAAGATTGGCCATGTTGGGGCTGGTAGCTCTGGCCTTCACCGAGTATGTGACAGGAGGGACCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

173

Amino Acids

18.39

Weight (kDa)

7.86

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	74 - 165	2.4e-08	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AccB1I	GGYRCC	2 cut(s)	220, 344
AciI	CCGC	2 cut(s)	266, 324
AcoI	YGGCCR	2 cut(s)	75, 459
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	2 cut(s)	66, 118
AfiI	CCNNNNNNNGG	1 cut(s)	468
AgsI	TTSAA	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	4 cut(s)	29, 143, 258, 479
AluI	AGCT	4 cut(s)	29, 143, 258, 479
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	4 cut(s)	75, 292, 459, 483
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	3 cut(s)	215, 292, 510
AsuHPI	GGTGA	4 cut(s)	37, 144, 265, 481
AsuNHI	GCTAGC	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	215, 510
AxyI	CCTNAGG	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	461
BanI	GGYRCC	2 cut(s)	220, 344
BbvCI	CCTCAGC	1 cut(s)	438
BccI	CCATC	2 cut(s)	55, 77
BceAI	ACGGC	2 cut(s)	253, 337
BfaI	CTAG	3 cut(s)	245, 272, 515
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	224
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	215, 510
BmgT120I	GGNCC	3 cut(s)	215, 292, 510
BmiI	GGNNCC	4 cut(s)	222, 346, 511, 512
BmsI	GCATC	2 cut(s)	377, 424
BmtI	GCTAGC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	4 cut(s)	72, 78, 288, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	105, 348
Bse21I	CCTNAGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	4 cut(s)	72, 78, 288, 340
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	323, 429, 444
BseNI	ACTGG	2 cut(s)	105, 348
BseRI	GAGGAG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	77, 294, 461, 485
BshNI	GGYRCC	2 cut(s)	220, 344
BsiSI	CCGG	2 cut(s)	218, 224
BslI	CCNNNNNNNGG	1 cut(s)	468
BsnI	GGCC	4 cut(s)	77, 294, 461, 485
Bsp143I	GATC	1 cut(s)	167
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	2 cut(s)	266, 324
BspANI	GGCC	4 cut(s)	77, 294, 461, 485
BspCNI	CTCAG	3 cut(s)	322, 430, 443
BspLI	GGNNCC	4 cut(s)	222, 346, 511, 512
BspOI	GCTAGC	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	220, 344
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	105, 348
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	4 cut(s)	72, 78, 288, 340
BssMI	GATC	1 cut(s)	167
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	3 cut(s)	72, 288, 340
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	242, 246
BstDEI	CTNAG	4 cut(s)	174, 309, 430, 438
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	399
BstXI	CCANNNNNNTGG	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	4 cut(s)	77, 294, 461, 485
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	112, 369
Cac8I	GCNNGC	2 cut(s)	242, 246
CaiI	CAGNNNCTG	1 cut(s)	437
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	3 cut(s)	215, 292, 510
Csp6I	GTAC	2 cut(s)	65, 117
CviAII	CATG	4 cut(s)	50, 55, 73, 463
CviQI	GTAC	2 cut(s)	65, 117
DdeI	CTNAG	4 cut(s)	174, 309, 430, 438
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
DrdI	GACNNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	2 cut(s)	75, 459
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	339
Eco130I	CCWWGG	3 cut(s)	72, 288, 340
Eco47I	GGWCC	2 cut(s)	215, 510
Eco81I	CCTNAGG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	510
EcoT14I	CCWWGG	3 cut(s)	72, 288, 340
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
ErhI	CCWWGG	3 cut(s)	72, 288, 340
FaeI	CATG	4 cut(s)	53, 58, 76, 466
FatI	CATG	4 cut(s)	49, 54, 72, 462
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	3 cut(s)	245, 272, 515
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	4 cut(s)	77, 294, 461, 485
HapII	CCGG	2 cut(s)	218, 224
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	4 cut(s)	53, 58, 76, 466
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	3 cut(s)	327, 376, 404
HpaII	CCGG	2 cut(s)	218, 224
HphI	GGTGA	4 cut(s)	37, 144, 265, 481
Hpy166II	GTNNAC	3 cut(s)	131, 204, 215
Hpy188I	TCNGA	3 cut(s)	90, 196, 433
Hpy8I	GTNNAC	3 cut(s)	131, 204, 215
HpyAV	CCTTC	4 cut(s)	85, 156, 382, 496
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	4 cut(s)	174, 309, 430, 438
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	53, 58, 76, 466
HspAI	GCGC	1 cut(s)	221
KasI	GGCGCC	1 cut(s)	220
KflI	GGGWCCC	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	4 cut(s)	27, 74, 94, 148
LpnPI	CCDG	8 cut(s)	118, 226, 231, 237, 361, 458, 467, 489
LweI	GCATC	2 cut(s)	377, 424
MaeI	CTAG	3 cut(s)	245, 272, 515
MaeIII	GTNAC	2 cut(s)	394, 499
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	2 cut(s)	149, 465
MlsI	TGGCCA	1 cut(s)	461
MluNI	TGGCCA	1 cut(s)	461
Mly113I	GGCGCC	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	7 cut(s)	73, 165, 171, 174, 433, 439, 500
Mox20I	TGGCCA	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	461
MspI	CCGG	2 cut(s)	218, 224
MwoI	GCNNNNNNNGC	1 cut(s)	272
NarI	GGCGCC	1 cut(s)	221
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	167
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	4 cut(s)	53, 58, 76, 466
NlaIV	GGNNCC	4 cut(s)	222, 346, 511, 512
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	2 cut(s)	394, 499
PfeI	GAWTC	2 cut(s)	327, 376
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	412
PluTI	GGCGCC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	510
PspN4I	GGNNCC	4 cut(s)	222, 346, 511, 512
PspPI	GGNCC	3 cut(s)	215, 292, 510
PspPPI	RGGWCCY	1 cut(s)	510
PstNI	CAGNNNCTG	1 cut(s)	437
RsaI	GTAC	2 cut(s)	66, 118
RsaNI	GTAC	2 cut(s)	65, 117
RseI	CAYNNNNRTG	1 cut(s)	59
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	3 cut(s)	215, 292, 510
SchI	GAGTC	1 cut(s)	413
SetI	ASST	9 cut(s)	31, 43, 145, 157, 180, 260, 431, 444, 481
SfaNI	GCATC	2 cut(s)	377, 424
SfcI	CTRYAG	1 cut(s)	399
SfoI	GGCGCC	1 cut(s)	222
SinI	GGWCC	2 cut(s)	215, 510
SmiMI	CAYNNNNRTG	1 cut(s)	59
SsiI	CCGC	2 cut(s)	266, 324
SspDI	GGCGCC	1 cut(s)	220
SspMI	CTAG	3 cut(s)	245, 272, 515
StyI	CCWWGG	3 cut(s)	72, 288, 340
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	166, 279
TatI	WGTACW	1 cut(s)	116
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	327, 376
TscAI	CASTG	2 cut(s)	112, 369
TseFI	GTSAC	2 cut(s)	394, 499
Tsp45I	GTSAC	2 cut(s)	394, 499
TspDTI	ATGAA	2 cut(s)	138, 248
TspRI	CASTG	2 cut(s)	112, 369
VpaK11BI	GGWCC	2 cut(s)	215, 510
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XspI	CTAG	3 cut(s)	245, 272, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.