Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

24366898 .. 24367999

Gene Structure 1102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1150400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGCAACAGTTTCCATGCAATCAATCTTTACAAGTTCTGTAGCTTATGGAGTTGGTAAGAGCAGAGTGAACCAGCTGATTGTTCCTGCTAACTATGCACCAAGTAGTCTGCGTAAGCATGCTCACATGAGAGTAATCGCAATGGCCAAGGATGAACAGAAGGAGCAACCAACCACTGTTACAGATGCATCAGAAAATTCAGAGCCAGCTCCTTCATCACCTTTACCTCCTCCACCTCCTCCTCCTCCTAAGGTCAGCCCAAAGTTTTCCGACGTGCTTGCATTTAGTGGCCCAGCACCGGAGAGAATCAACGGCAGGCTAGCAATGGTGGGATTCGTTGCAGCTCTAGCAGTGGAGCTATCCAAGGGCCAAGATGTGTTTGCTCAGATATCCAACGGTTTAGGGATCCCATTGTTCCTCGGCACCAGCATTTTGCTGTCGGTGGCATCCTTGGTTCCTCTATTCAAAGGGGTGAGTGTGGAGTCCAAATCAGAGGGACTCATGACTTCAGATGCTGAGTTGTGGAATGGAAGGCTGGCAATGTTAGAGCAAGTCCACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

189

Amino Acids

19.8

Weight (kDa)

6.84

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	99 - 183	3.2e-07	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	425
AclWI	GGATC	2 cut(s)	403, 416
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	469
AjiI	CACGTC	1 cut(s)	277
AluBI	AGCT	5 cut(s)	47, 79, 212, 347, 361
AluI	AGCT	5 cut(s)	47, 79, 212, 347, 361
AlwI	GGATC	2 cut(s)	403, 416
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	3 cut(s)	147, 292, 370
ApeKI	GCWGC	2 cut(s)	5, 344
ApoI	RAATTY	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	293, 370
AsuHPI	GGTGA	2 cut(s)	213, 487
AsuNHI	GCTAGC	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BfaI	CTAG	2 cut(s)	323, 350
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	6, 345
BlsI	GCNGC	2 cut(s)	7, 346
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	293, 370
BmiI	GGNNCC	3 cut(s)	410, 427, 459
BmsI	GCATC	4 cut(s)	178, 200, 458, 505
BmtI	GCTAGC	1 cut(s)	326
BsaJI	CCNNGG	4 cut(s)	150, 366, 421, 453
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	252
Bse3DI	GCAATG	3 cut(s)	150, 333, 549
BseDI	CCNNGG	4 cut(s)	150, 366, 421, 453
BseGI	GGATG	2 cut(s)	160, 449
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	3 cut(s)	150, 333, 549
BseMII	CTCAG	2 cut(s)	401, 510
BseRI	GAGGAG	4 cut(s)	222, 231, 234, 237
BseXI	GCAGC	1 cut(s)	356
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	3 cut(s)	149, 294, 372
BshNI	GGYRCC	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	3 cut(s)	149, 294, 372
Bsp143I	GATC	1 cut(s)	408
BspANI	GGCC	3 cut(s)	149, 294, 372
BspCNI	CTCAG	2 cut(s)	400, 511
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	3 cut(s)	410, 427, 459
BspOI	GCTAGC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	403, 416
BspT107I	GGYRCC	1 cut(s)	425
BsrDI	GCAATG	3 cut(s)	150, 333, 549
BssECI	CCNNGG	4 cut(s)	150, 366, 421, 453
BssMI	GATC	1 cut(s)	408
BssT1I	CCWWGG	3 cut(s)	150, 366, 453
Bst4CI	ACNGT	3 cut(s)	13, 181, 401
BstC8I	GCNNGC	6 cut(s)	123, 210, 282, 320, 324, 540
BstDEI	CTNAG	3 cut(s)	252, 387, 519
BstF5I	GGATG	2 cut(s)	160, 449
BstKTI	GATC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 350
BstNSI	RCATGY	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	149, 294, 372
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	160, 449
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	177, 360
Cac8I	GCNNGC	6 cut(s)	123, 210, 282, 320, 324, 540
CaiI	CAGNNNCTG	1 cut(s)	518
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	293, 370
CviAII	CATG	4 cut(s)	19, 122, 130, 505
DdeI	CTNAG	3 cut(s)	252, 387, 519
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	3 cut(s)	150, 366, 453
Eco32I	GATATC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	3 cut(s)	150, 366, 453
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	3 cut(s)	150, 366, 453
FaeI	CATG	4 cut(s)	22, 125, 133, 508
FaiI	YATR	6 cut(s)	20, 51, 99, 123, 131, 506
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	18, 121, 129, 504
Fnu4HI	GCNGC	2 cut(s)	6, 345
FokI	GGATG	2 cut(s)	167, 436
Fsp4HI	GCNGC	2 cut(s)	6, 345
FspBI	CTAG	2 cut(s)	323, 350
GluI	GCNGC	2 cut(s)	6, 345
GsaI	CCCAGC	1 cut(s)	299
HaeIII	GGCC	3 cut(s)	149, 294, 372
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	4 cut(s)	22, 125, 133, 508
HinfI	GANTC	4 cut(s)	309, 336, 485, 501
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	213, 487
Hpy166II	GTNNAC	2 cut(s)	73, 559
Hpy188I	TCNGA	6 cut(s)	196, 205, 274, 390, 496, 514
Hpy188III	TCNNGA	1 cut(s)	505
Hpy8I	GTNNAC	2 cut(s)	73, 559
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	157, 225, 528
HpyCH4III	ACNGT	3 cut(s)	13, 181, 401
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	6 cut(s)	8, 22, 101, 191, 284, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 350
HpyF3I	CTNAG	3 cut(s)	252, 387, 519
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	22, 125, 133, 508
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	166, 217, 358
LpnPI	CCDG	8 cut(s)	89, 102, 222, 304, 309, 315, 442, 524
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	4 cut(s)	178, 200, 458, 505
MaeI	CTAG	2 cut(s)	323, 350
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MflI	RGATCY	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	1 cut(s)	199
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	494, 495
MmeI	TCCRAC	2 cut(s)	297, 420
MnlI	CCTC	9 cut(s)	240, 243, 249, 252, 255, 258, 431, 471, 490
Mox20I	TGGCCA	1 cut(s)	149
Mph1103I	ATGCAT	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	98, 350
NdeII	GATC	1 cut(s)	408
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	4 cut(s)	22, 125, 133, 508
NlaIV	GGNNCC	3 cut(s)	410, 427, 459
NmeAIII	GCCGAG	1 cut(s)	402
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	125
PaeI	GCATGC	1 cut(s)	125
PagI	TCATGA	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	309, 336
PkrI	GCNGC	2 cut(s)	7, 346
PleI	GAGTC	2 cut(s)	493, 495
PpsI	GAGTC	2 cut(s)	493, 495
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	410, 427, 459
PspPI	GGNCC	2 cut(s)	293, 370
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	79
SatI	GCNGC	2 cut(s)	6, 345
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	293, 370
SchI	GAGTC	2 cut(s)	494, 495
SfaNI	GCATC	4 cut(s)	178, 200, 458, 505
SfcI	CTRYAG	1 cut(s)	42
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	323, 350
StyI	CCWWGG	3 cut(s)	150, 366, 453
TaaI	ACNGT	3 cut(s)	13, 181, 401
TaiI	ACGT	1 cut(s)	279
TasI	AATT	1 cut(s)	199
TfiI	GAWTC	2 cut(s)	309, 336
TscAI	CASTG	2 cut(s)	184, 360
TseI	GCWGC	2 cut(s)	5, 344
TspDTI	ATGAA	2 cut(s)	171, 207
TspRI	CASTG	2 cut(s)	184, 360
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	125
XspI	CTAG	2 cut(s)	323, 350
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.