Prupe.1G021600_v2.0.a1

Early light-induced protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
1499874 .. 1500841
968 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G021600.1

Sequence Viewer

Length: 576 bp
ATGGCTGCATCATCTTCCATGCAATCAATATTTCTTGCTAGCTCCGTTGCTTATGGAGCGAGAAAGAACAAATCTGTTGGAGTGAGCCACCTTGTTGCACCAACTCTGCGTAGCTACCCTCACATGATGAGGGTAAGCTCGATGGCCAAGGATGGTCAGAAGAAGCAACCATCTACAGTAACAAATGCATCAAAAGTTCCTCCACCTTCTCCTTCTTCTCCTCCTCCCAAGGTTAGCACAAAGTTCTCGGACTTGTTTGCCTTCAGTGGGCCAGCCCCAGAGAGAATCAACGGCAGGCTTGCAATGGTGGGGTTTGTCTCAGCTCTGGCAGTAGAACTATCCAATGGCCAAGATGTGTTTGCTCAGATATCCAACGGTGGAGTCTCTTTGTTCGTTGCCACTAGTATTTTGCTCTCTGTGGCATCCTTGGTTCCTCTGTTTAAAGGGGTGAGCGTGGAGTCCAAATCAGATGGGATCATGACGTCAGATGCTGAGCTGTTGAATGGAAGGCTGGCCATGTTAGGTCTGGTAGCTTTGGTCTTCACTGAGTATGTGAAGGGAGGGACTCTAGTTTAG

Protein Analysis

192

Amino Acids

19.84

Weight (kDa)

9.87

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000396)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22840 AT4G14690
fragaria_vesca FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 485
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 3 cut(s) 144, 346, 513
AcuI CTGAAG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 267
AgsI TTSAA 1 cut(s) 502
AhlI ACTAGT 1 cut(s) 401
AluBI AGCT 6 cut(s) 42, 114, 138, 323, 496, 533
AluI AGCT 6 cut(s) 42, 114, 138, 323, 496, 533
Alw26I GTCTC 2 cut(s) 322, 388
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 4 cut(s) 144, 269, 346, 513
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 460
AsuNHI GCTAGC 1 cut(s) 38
BalI TGGCCA 3 cut(s) 146, 348, 515
BbsI GAAGAC 1 cut(s) 532
BccI CCATC 4 cut(s) 136, 146, 178, 464
BceAI ACGGC 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 322, 388
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 3 cut(s) 39, 402, 569
BfmI CTRYAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 432
BmsI GCATC 4 cut(s) 17, 197, 431, 478
BmtI GCTAGC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 532
Bpu1102I GCTNAGC 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 482
BsaJI CCNNGG 3 cut(s) 147, 228, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 147, 228, 426
BseGI GGATG 2 cut(s) 157, 422
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 4 cut(s) 333, 377, 483, 537
BseRI GAGGAG 2 cut(s) 210, 213
BshFI GGCC 4 cut(s) 146, 271, 348, 515
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 2 cut(s) 322, 388
BsnI GGCC 4 cut(s) 146, 271, 348, 515
Bsp143I GATC 1 cut(s) 474
Bsp1720I GCTNAGC 1 cut(s) 492
BspANI GGCC 4 cut(s) 146, 271, 348, 515
BspCNI CTCAG 4 cut(s) 332, 376, 484, 538
BspHI TCATGA 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 432
BspOI GCTAGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 3 cut(s) 147, 228, 426
BssMI GATC 1 cut(s) 474
BssNI GRCGYC 1 cut(s) 482
BssT1I CCWWGG 3 cut(s) 147, 228, 426
Bst4CI ACNGT 2 cut(s) 178, 377
BstACI GRCGYC 1 cut(s) 482
BstC8I GCNNGC 5 cut(s) 40, 273, 296, 300, 513
BstDEI CTNAG 4 cut(s) 319, 363, 492, 546
BstF5I GGATG 2 cut(s) 157, 422
BstKTI GATC 1 cut(s) 477
BstMAI GTCTC 2 cut(s) 322, 388
BstMBI GATC 1 cut(s) 474
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstSFI CTRYAG 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 532
BsuRI GGCC 4 cut(s) 146, 271, 348, 515
BtsCI GGATG 2 cut(s) 157, 422
BtsIMutI CAGTG 2 cut(s) 271, 543
Cac8I GCNNGC 5 cut(s) 40, 273, 296, 300, 513
CaiI CAGNNNCTG 1 cut(s) 491
CciI TCATGA 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 4 cut(s) 19, 124, 478, 517
DdeI CTNAG 4 cut(s) 319, 363, 492, 546
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
DraI TTTAAA 1 cut(s) 442
EaeI YGGCCR 3 cut(s) 144, 346, 513
Eco130I CCWWGG 3 cut(s) 147, 228, 426
Eco32I GATATC 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 247
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 3 cut(s) 147, 228, 426
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 3 cut(s) 147, 228, 426
FaeI CATG 4 cut(s) 22, 127, 481, 520
FaiI YATR 6 cut(s) 20, 54, 125, 479, 518, 552
FatI CATG 4 cut(s) 18, 123, 477, 516
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 164, 409
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 39, 402, 569
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 4 cut(s) 146, 271, 348, 515
Hin1I GRCGYC 1 cut(s) 482
Hin1II CATG 4 cut(s) 22, 127, 481, 520
HinfI GANTC 4 cut(s) 285, 381, 458, 565
HphI GGTGA 1 cut(s) 460
Hpy188I TCNGA 5 cut(s) 159, 250, 366, 469, 487
Hpy188III TCNNGA 1 cut(s) 478
HpyAV CCTTC 5 cut(s) 216, 222, 271, 501, 550
HpyCH4III ACNGT 2 cut(s) 178, 377
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 5 cut(s) 8, 22, 98, 188, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 4 cut(s) 319, 363, 492, 546
HpySE526I ACGT 1 cut(s) 482
Hsp92I GRCGYC 1 cut(s) 482
Hsp92II CATG 4 cut(s) 22, 127, 481, 520
Kzo9I GATC 1 cut(s) 474
LmnI GCTCC 2 cut(s) 47, 56
LpnPI CCDG 6 cut(s) 280, 285, 291, 311, 497, 512
LweI GCATC 4 cut(s) 17, 197, 431, 478
MaeI CTAG 3 cut(s) 39, 402, 569
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 476
MboI GATC 1 cut(s) 474
MboII GAAGA 4 cut(s) 6, 172, 207, 532
MlsI TGGCCA 3 cut(s) 146, 348, 515
MluNI TGGCCA 3 cut(s) 146, 348, 515
MlyI GAGTC 3 cut(s) 390, 467, 559
MmeI TCCRAC 2 cut(s) 58, 396
MnlI CCTC 7 cut(s) 123, 129, 210, 231, 234, 444, 554
Mox20I TGGCCA 3 cut(s) 146, 348, 515
Mph1103I ATGCAT 1 cut(s) 190
MscI TGGCCA 3 cut(s) 146, 348, 515
MseI TTAA 1 cut(s) 441
Msp20I TGGCCA 3 cut(s) 146, 348, 515
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 1 cut(s) 474
NheI GCTAGC 1 cut(s) 38
NlaIII CATG 4 cut(s) 22, 127, 481, 520
NlaIV GGNNCC 1 cut(s) 432
NsiI ATGCAT 1 cut(s) 190
PagI TCATGA 1 cut(s) 477
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 3 cut(s) 389, 466, 559
PpsI GAGTC 3 cut(s) 389, 466, 559
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 491
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 474
Sau96I GGNCC 1 cut(s) 269
SchI GAGTC 3 cut(s) 390, 467, 559
SfaNI GCATC 4 cut(s) 17, 197, 431, 478
SfcI CTRYAG 1 cut(s) 174
SpeI ACTAGT 1 cut(s) 401
SspI AATATT 1 cut(s) 30
SspMI CTAG 3 cut(s) 39, 402, 569
StyI CCWWGG 3 cut(s) 147, 228, 426
TaaI ACNGT 2 cut(s) 178, 377
TaiI ACGT 1 cut(s) 485
TaqI TCGA 1 cut(s) 140
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 271, 550
TseI GCWGC 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 2 cut(s) 271, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XspI CTAG 3 cut(s) 39, 402, 569
ZraI GACGTC 1 cut(s) 483
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.