Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

8021779 .. 8022651

Gene Structure 873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G008720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTTCAACGATCTCAATGCAATCGATTCTGGGAAGCTCTGTGGATTATGGAGCAGGCAAGAACAGAGTGAACCAGATAAATGTTTCTGCTGATGGTCAGAAGGAGCAACAGACCAGTGTATATAGTACATTAGAAAGTTCACAGAAATCAGCTCCTTCATCACCTCTTCCTCCTCGATCTCCTAAGGTCAGCACAAAGTTTTCAGACGGGTTTACATTTAGTGGACCGGCGCCGGAGAGAATGAACGGCAGGCTAGCAATGGTGAGCTTTGTGGCGGCTCTAGCAGTCCAAGGGCCAAGATGTGTTTGCTCAGTTATCCAACGGCGGAATCCCATTGGCCTTGGCACCAGTATTTTGCTATCAGTGGCATCTTTGATTCCATTGTTGAAGGGTGTGACTGTAGAGTCCAAATCAAAAGGGTTGATGACCTCAGATGCTGAGGTATGGAATGGAAGATTGGCCATGTTGGGGCTGGTAGCTCTGGCCTTCACCGAGTATGTGACAGGAGGGACCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

174

Amino Acids

18.21

Weight (kDa)

9.64

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	406
AccB1I	GGYRCC	2 cut(s)	232, 347
AciI	CCGC	2 cut(s)	278, 328
AcoI	YGGCCR	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	471
AgsI	TTSAA	2 cut(s)	9, 391
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	4 cut(s)	39, 155, 270, 482
AluI	AGCT	4 cut(s)	39, 155, 270, 482
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	4 cut(s)	296, 340, 462, 486
AspLEI	GCGC	1 cut(s)	235
AspS9I	GGNCC	3 cut(s)	227, 296, 513
AsuHPI	GGTGA	3 cut(s)	156, 277, 484
AsuNHI	GCTAGC	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	227, 513
AxyI	CCTNAGG	1 cut(s)	186
BalI	TGGCCA	1 cut(s)	464
BanI	GGYRCC	2 cut(s)	232, 347
BbvCI	CCTCAGC	1 cut(s)	441
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	265, 341
BcgI	CGANNNNNNTGC	1 cut(s)	35
BfaI	CTAG	3 cut(s)	257, 284, 518
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	236
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme18I	GGWCC	2 cut(s)	227, 513
BmgT120I	GGNCC	3 cut(s)	227, 296, 513
BmiI	GGNNCC	4 cut(s)	234, 349, 514, 515
BmsI	GCATC	2 cut(s)	380, 427
BmtI	GCTAGC	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	441
Bsa29I	ATCGAT	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	292, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	117, 351
Bse21I	CCTNAGG	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	292, 343
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	327, 432, 447
BseNI	ACTGG	2 cut(s)	117, 351
BseRI	GAGGAG	1 cut(s)	165
BshFI	GGCC	4 cut(s)	298, 342, 464, 488
BshNI	GGYRCC	2 cut(s)	232, 347
BshVI	ATCGAT	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	230, 236
BslI	CCNNNNNNNGG	1 cut(s)	471
BsnI	GGCC	4 cut(s)	298, 342, 464, 488
Bsp143I	GATC	2 cut(s)	12, 179
BspACI	CCGC	2 cut(s)	278, 328
BspANI	GGCC	4 cut(s)	298, 342, 464, 488
BspCNI	CTCAG	3 cut(s)	326, 433, 446
BspDI	ATCGAT	1 cut(s)	26
BspLI	GGNNCC	4 cut(s)	234, 349, 514, 515
BspOI	GCTAGC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	232, 347
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	117, 351
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	292, 343
BssMI	GATC	2 cut(s)	12, 179
BssNI	GRCGYC	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	292, 343
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	58, 254, 258
BstDEI	CTNAG	4 cut(s)	186, 313, 433, 441
BstH2I	RGCGCY	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	2 cut(s)	15, 182
BstMBI	GATC	2 cut(s)	12, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	402
Bsu15I	ATCGAT	1 cut(s)	26
Bsu36I	CCTNAGG	1 cut(s)	186
BsuRI	GGCC	4 cut(s)	298, 342, 464, 488
BsuTUI	ATCGAT	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	124, 372
Cac8I	GCNNGC	3 cut(s)	58, 254, 258
CaiI	CAGNNNCTG	1 cut(s)	440
CfoI	GCGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	227, 296, 513
ClaI	ATCGAT	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	1 cut(s)	466
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	4 cut(s)	186, 313, 433, 441
DinI	GGCGCC	1 cut(s)	234
DpnI	GATC	2 cut(s)	14, 181
DpnII	GATC	2 cut(s)	12, 179
DrdI	GACNNNNNNGTC	1 cut(s)	406
DseDI	GACNNNNNNGTC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	343
Eco130I	CCWWGG	2 cut(s)	292, 343
Eco47I	GGWCC	2 cut(s)	227, 513
Eco81I	CCTNAGG	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	513
EcoT14I	CCWWGG	2 cut(s)	292, 343
EgeI	GGCGCC	1 cut(s)	234
EheI	GGCGCC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	292, 343
FaeI	CATG	1 cut(s)	469
FaiI	YATR	6 cut(s)	51, 124, 126, 448, 467, 501
FatI	CATG	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	3 cut(s)	257, 284, 518
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	298, 342, 464, 488
HapII	CCGG	2 cut(s)	230, 236
HhaI	GCGC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	4 cut(s)	28, 331, 379, 407
HpaII	CCGG	2 cut(s)	230, 236
HphI	GGTGA	3 cut(s)	156, 277, 484
Hpy166II	GTNNAC	4 cut(s)	73, 143, 216, 227
Hpy188I	TCNGA	3 cut(s)	102, 208, 436
Hpy8I	GTNNAC	4 cut(s)	73, 143, 216, 227
HpyAV	CCTTC	4 cut(s)	97, 168, 385, 499
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	4 cut(s)	186, 313, 433, 441
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	1 cut(s)	233
KasI	GGCGCC	1 cut(s)	232
KflI	GGGWCCC	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	12, 179
LmnI	GCTCC	3 cut(s)	53, 106, 160
LweI	GCATC	2 cut(s)	380, 427
MaeI	CTAG	3 cut(s)	257, 284, 518
MaeIII	GTNAC	2 cut(s)	397, 502
MalI	GATC	2 cut(s)	14, 181
MboI	GATC	2 cut(s)	12, 179
MboII	GAAGA	2 cut(s)	161, 468
MlsI	TGGCCA	1 cut(s)	464
MluNI	TGGCCA	1 cut(s)	464
Mly113I	GGCGCC	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	177, 183, 186, 436, 442, 503
Mox20I	TGGCCA	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	464
MspI	CCGG	2 cut(s)	230, 236
MwoI	GCNNNNNNNGC	1 cut(s)	284
NarI	GGCGCC	1 cut(s)	233
NdeII	GATC	2 cut(s)	12, 179
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	4 cut(s)	234, 349, 514, 515
NmuCI	GTSAC	2 cut(s)	397, 502
PfeI	GAWTC	3 cut(s)	28, 331, 379
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	415
PluTI	GGCGCC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	513
Psp5II	RGGWCCY	1 cut(s)	513
PspN4I	GGNNCC	4 cut(s)	234, 349, 514, 515
PspPI	GGNCC	3 cut(s)	227, 296, 513
PspPPI	RGGWCCY	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	12, 179
Sau96I	GGNCC	3 cut(s)	227, 296, 513
SchI	GAGTC	1 cut(s)	416
SetI	ASST	8 cut(s)	41, 157, 169, 192, 272, 434, 447, 484
SfaNI	GCATC	2 cut(s)	380, 427
SfcI	CTRYAG	1 cut(s)	402
SfoI	GGCGCC	1 cut(s)	234
SinI	GGWCC	2 cut(s)	227, 513
SsiI	CCGC	2 cut(s)	278, 328
SspDI	GGCGCC	1 cut(s)	232
SspMI	CTAG	3 cut(s)	257, 284, 518
StyI	CCWWGG	2 cut(s)	292, 343
TaaI	ACNGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	26, 178
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	3 cut(s)	28, 331, 379
TscAI	CASTG	2 cut(s)	124, 372
TseFI	GTSAC	2 cut(s)	397, 502
Tsp45I	GTSAC	2 cut(s)	397, 502
TspDTI	ATGAA	2 cut(s)	150, 260
TspRI	CASTG	2 cut(s)	124, 372
VpaK11BI	GGWCC	2 cut(s)	227, 513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	3 cut(s)	257, 284, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.