Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

7963073 .. 7964080

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG105000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTACGTGCAGGATGGTCAGAAGGAGCAACAGACCAGTGTACATAGTACATTAGAAAGTTCACAGAAATCAGCTCCTTCATCACCTCTTCCTCCTCGATCTCCTAAGGTCAGCACAAAGTTTTCAGACGGGTTTACATTTAGTGGACCCGCGCCGGAGAGAATCAACGGCAGGCTAGCAATGGTGGGCTTTGTGGCGGCTCTAGCAGTCGAACTATCCAAAGGGCAAGATGTGTTTGCTCAGTTATCCAACGGCGGAATCCCATTGTTCCTTGGCAGCAGTATTTTGCTATCAGTGGCATCTTTGATTCCATTGTTGAAGGGTGTGACTGTAGAGTCCAAATCAAAAAGGTTGATGACCTCAGATGCTGAGGTATGGAATGGAAGATTGGCCATGTTGGGGCTGGTAGCTCTGGCCTTCACTGAGTATGTGACAGGAGGGACCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

150

Amino Acids

15.8

Weight (kDa)

9.05

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	51 - 142	1.9e-09	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	334
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	150, 197, 255
AcoI	YGGCCR	1 cut(s)	390
AfaI	GTAC	3 cut(s)	5, 42, 49
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	2 cut(s)	74, 410
AluI	AGCT	2 cut(s)	74, 410
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	390, 414
ApeKI	GCWGC	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	146, 441
AsuHPI	GGTGA	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	146, 441
AxyI	CCTNAGG	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	392
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	1 cut(s)	8
BceAI	ACGGC	2 cut(s)	184, 268
BfaI	CTAG	3 cut(s)	176, 203, 446
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	2 cut(s)	198, 277
BlsI	GCNGC	2 cut(s)	199, 278
Bme18I	GGWCC	2 cut(s)	146, 441
BmgT120I	GGNCC	2 cut(s)	146, 441
BmiI	GGNNCC	3 cut(s)	148, 442, 443
BmsI	GCATC	2 cut(s)	308, 355
BmtI	GCTAGC	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	36
Bse21I	CCTNAGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	4 cut(s)	254, 360, 375, 414
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	392, 416
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	399
BsnI	GGCC	2 cut(s)	392, 416
Bsp1407I	TGTACA	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	3 cut(s)	150, 197, 255
BspANI	GGCC	2 cut(s)	392, 416
BspCNI	CTCAG	4 cut(s)	253, 361, 374, 415
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	3 cut(s)	148, 442, 443
BspOI	GCTAGC	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	93
BstAUI	TGTACA	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	173, 177
BstDEI	CTNAG	5 cut(s)	105, 240, 361, 369, 423
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	288
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	392, 416
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	3 cut(s)	43, 300, 420
Cac8I	GCNNGC	2 cut(s)	173, 177
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	146, 441
Csp6I	GTAC	3 cut(s)	4, 41, 48
CviAII	CATG	1 cut(s)	394
CviJI	RGCY	8 cut(s)	74, 175, 189, 200, 392, 403, 410, 416
CviKI_1	RGCY	8 cut(s)	74, 175, 189, 200, 392, 403, 410, 416
CviQI	GTAC	3 cut(s)	4, 41, 48
DdeI	CTNAG	5 cut(s)	105, 240, 361, 369, 423
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
DrdI	GACNNNNNNGTC	1 cut(s)	334
DseDI	GACNNNNNNGTC	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	146, 441
Eco81I	CCTNAGG	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	441
EcoT14I	CCWWGG	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	397
FaiI	YATR	4 cut(s)	45, 376, 395, 429
FatI	CATG	1 cut(s)	393
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	198, 277
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	198, 277
FspBI	CTAG	3 cut(s)	176, 203, 446
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	2 cut(s)	198, 277
HaeIII	GGCC	2 cut(s)	392, 416
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	4 cut(s)	162, 258, 307, 335
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	4 cut(s)	41, 62, 135, 146
Hpy188I	TCNGA	3 cut(s)	21, 127, 364
Hpy8I	GTNNAC	4 cut(s)	41, 62, 135, 146
HpyAV	CCTTC	4 cut(s)	16, 87, 313, 427
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	5 cut(s)	105, 240, 361, 369, 423
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	1 cut(s)	152
KflI	GGGWCCC	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	25, 79
LpnPI	CCDG	6 cut(s)	49, 157, 168, 389, 398, 420
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	2 cut(s)	308, 355
MaeI	CTAG	3 cut(s)	176, 203, 446
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	325, 430
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	80, 396
MlsI	TGGCCA	1 cut(s)	392
MluNI	TGGCCA	1 cut(s)	392
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	96, 102, 105, 364, 370, 431
Mox20I	TGGCCA	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	392
MspI	CCGG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	1 cut(s)	98
NheI	GCTAGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	3 cut(s)	148, 442, 443
NmuCI	GTSAC	2 cut(s)	325, 430
PfeI	GAWTC	3 cut(s)	162, 258, 307
PkrI	GCNGC	2 cut(s)	199, 278
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	441
PspN4I	GGNNCC	3 cut(s)	148, 442, 443
PspPI	GGNCC	2 cut(s)	146, 441
PspPPI	RGGWCCY	1 cut(s)	441
PstNI	CAGNNNCTG	1 cut(s)	368
RsaI	GTAC	3 cut(s)	5, 42, 49
RsaNI	GTAC	3 cut(s)	4, 41, 48
SatI	GCNGC	2 cut(s)	198, 277
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	2 cut(s)	146, 441
SchI	GAGTC	1 cut(s)	344
SetI	ASST	8 cut(s)	9, 76, 88, 111, 353, 362, 375, 412
SfaNI	GCATC	2 cut(s)	308, 355
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	146, 441
SsiI	CCGC	3 cut(s)	150, 197, 255
SspMI	CTAG	3 cut(s)	176, 203, 446
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	97, 210
TatI	WGTACW	2 cut(s)	40, 47
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	162, 258, 307
TscAI	CASTG	3 cut(s)	43, 300, 427
TseFI	GTSAC	2 cut(s)	325, 430
TseI	GCWGC	1 cut(s)	276
Tsp45I	GTSAC	2 cut(s)	325, 430
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	3 cut(s)	43, 300, 427
VpaK11BI	GGWCC	2 cut(s)	146, 441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	3 cut(s)	176, 203, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.