Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

1502643 .. 1503865

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G021700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTGCATCATCTTCCATGCAATCAATATTTCTTGCTAACTCCGTGGCTTATGGAGCGGGAAAGAACAAATGTGTTGGAGTTATTTCAGTGCCTGCTCTGCATAGGTACTCTCCTCCCATGAGGGTACGCTCAATGGCCAAGGATGGTCAGAAGGAGCAACCATCTACTGTGACAAATGCATCAAAAAGCCCACCACCACCTCTTACACCTCTTCCTTCTAAAGCTAGCATAAAGTTCTCGGACTTGTTTGCCTTCAGTGGGCCAGCCCCGGAGAGGATCAACGGCAGGCTTGCAATGGTGGGGTTTGTCTCAGCTCTGGCAGTAGAACTATACAATGGCCAAGATGTGTTTGCTCAGATATCCAACGGTGGAGTCTCGTTGTTCGTTGCCACTAGTATTTTGCTCTCCGTGGCATCCTTGGTTCCTCTGTTTAAAGGGGTGAGCGTGGAGTCCAAATCAGAAGGGATCATGACGTCAGATGCTGAGCTGTTGAATGGAAGGCTGGCCATGTTAGGTCTGGTAGCTTTAGTCTTCACTGAGTATGTGAAGGGAGGGACTCTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

190

Amino Acids

19.7

Weight (kDa)

9.48

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	479
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	2 cut(s)	287, 476
AcoI	YGGCCR	3 cut(s)	138, 340, 507
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	2 cut(s)	110, 129
AfiI	CCNNNNNNNGG	2 cut(s)	261, 276
AgsI	TTSAA	1 cut(s)	496
AhlI	ACTAGT	1 cut(s)	395
AluBI	AGCT	4 cut(s)	227, 317, 490, 527
AluI	AGCT	4 cut(s)	227, 317, 490, 527
Alw26I	GTCTC	2 cut(s)	316, 382
AlwI	GGATC	2 cut(s)	287, 476
AlwNI	CAGNNNCTG	2 cut(s)	95, 485
AoxI	GGCC	4 cut(s)	138, 263, 340, 507
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	454
AsuNHI	GCTAGC	1 cut(s)	227
BalI	TGGCCA	3 cut(s)	140, 342, 509
BbsI	GAAGAC	1 cut(s)	526
BccI	CCATC	2 cut(s)	140, 172
BceAI	ACGGC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	316, 382
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	4 cut(s)	228, 396, 563, 568
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	4 cut(s)	17, 191, 425, 472
BmtI	GCTAGC	1 cut(s)	231
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	526
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	5 cut(s)	45, 141, 270, 411, 420
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 276
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	5 cut(s)	45, 141, 270, 411, 420
BseGI	GGATG	2 cut(s)	151, 416
BseLI	CCNNNNNNNGG	2 cut(s)	261, 276
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	4 cut(s)	327, 371, 477, 531
BseRI	GAGGAG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	140, 265, 342, 509
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	261, 276
BsmAI	GTCTC	2 cut(s)	316, 382
BsnI	GGCC	4 cut(s)	140, 265, 342, 509
Bsp143I	GATC	2 cut(s)	279, 468
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	4 cut(s)	140, 265, 342, 509
BspCNI	CTCAG	4 cut(s)	326, 370, 478, 532
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	426
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	287, 476
BsrBI	CCGCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	303
BssECI	CCNNGG	5 cut(s)	45, 141, 270, 411, 420
BssMI	GATC	2 cut(s)	279, 468
BssNI	GRCGYC	1 cut(s)	476
BssT1I	CCWWGG	2 cut(s)	141, 420
Bst4CI	ACNGT	2 cut(s)	172, 371
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	476
BstC8I	GCNNGC	6 cut(s)	96, 229, 267, 290, 294, 507
BstDEI	CTNAG	4 cut(s)	313, 357, 486, 540
BstDSI	CCRYGG	2 cut(s)	45, 411
BstF5I	GGATG	2 cut(s)	151, 416
BstKTI	GATC	2 cut(s)	282, 471
BstMAI	GTCTC	2 cut(s)	316, 382
BstMBI	GATC	2 cut(s)	279, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 100
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	526
BsuRI	GGCC	4 cut(s)	140, 265, 342, 509
BtgI	CCRYGG	2 cut(s)	45, 411
BtsCI	GGATG	2 cut(s)	151, 416
BtsIMutI	CAGTG	3 cut(s)	96, 265, 537
Cac8I	GCNNGC	6 cut(s)	96, 229, 267, 290, 294, 507
CaiI	CAGNNNCTG	2 cut(s)	95, 485
CciI	TCATGA	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	109, 128
CviAII	CATG	4 cut(s)	19, 121, 472, 511
CviQI	GTAC	2 cut(s)	109, 128
DdeI	CTNAG	4 cut(s)	313, 357, 486, 540
DpnI	GATC	2 cut(s)	281, 470
DpnII	GATC	2 cut(s)	279, 468
DraI	TTTAAA	1 cut(s)	436
EaeI	YGGCCR	3 cut(s)	138, 340, 507
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	141, 420
Eco32I	GATATC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	241
EcoRV	GATATC	1 cut(s)	363
EcoT14I	CCWWGG	2 cut(s)	141, 420
EcoT22I	ATGCAT	1 cut(s)	184
ErhI	CCWWGG	2 cut(s)	141, 420
FaeI	CATG	4 cut(s)	22, 124, 475, 514
FaiI	YATR	9 cut(s)	20, 54, 105, 122, 233, 334, 473, 512, 546
FatI	CATG	4 cut(s)	18, 120, 471, 510
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	158, 403
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	4 cut(s)	228, 396, 563, 568
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	4 cut(s)	140, 265, 342, 509
HapII	CCGG	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	22, 124, 475, 514
HinfI	GANTC	3 cut(s)	375, 452, 559
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	454
Hpy188I	TCNGA	5 cut(s)	153, 244, 360, 463, 481
Hpy188III	TCNNGA	1 cut(s)	472
HpyAV	CCTTC	6 cut(s)	148, 228, 265, 458, 495, 544
HpyCH4III	ACNGT	2 cut(s)	172, 371
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	5 cut(s)	8, 22, 103, 182, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 100
HpyF3I	CTNAG	4 cut(s)	313, 357, 486, 540
HpySE526I	ACGT	1 cut(s)	476
Hsp92I	GRCGYC	1 cut(s)	476
Hsp92II	CATG	4 cut(s)	22, 124, 475, 514
Kzo9I	GATC	2 cut(s)	279, 468
LmnI	GCTCC	2 cut(s)	56, 157
LpnPI	CCDG	7 cut(s)	108, 274, 279, 285, 305, 491, 506
LweI	GCATC	4 cut(s)	17, 191, 425, 472
MaeI	CTAG	4 cut(s)	228, 396, 563, 568
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	281, 470
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	279, 468
MboII	GAAGA	3 cut(s)	6, 206, 526
MlsI	TGGCCA	3 cut(s)	140, 342, 509
MluNI	TGGCCA	3 cut(s)	140, 342, 509
MlyI	GAGTC	3 cut(s)	384, 461, 553
MmeI	TCCRAC	2 cut(s)	58, 390
MnlI	CCTC	7 cut(s)	117, 126, 213, 222, 270, 438, 548
Mox20I	TGGCCA	3 cut(s)	140, 342, 509
Mph1103I	ATGCAT	1 cut(s)	184
MscI	TGGCCA	3 cut(s)	140, 342, 509
MseI	TTAA	1 cut(s)	435
Msp20I	TGGCCA	3 cut(s)	140, 342, 509
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	56, 100
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	279, 468
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	22, 124, 475, 514
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	184
PagI	TCATGA	1 cut(s)	471
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	383, 460, 553
PpsI	GAGTC	3 cut(s)	383, 460, 553
PshAI	GACNNNNGTC	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	2 cut(s)	95, 485
RsaI	GTAC	2 cut(s)	110, 129
RsaNI	GTAC	2 cut(s)	109, 128
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	279, 468
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	3 cut(s)	384, 461, 553
ScrFI	CCNGG	1 cut(s)	272
SetI	ASST	9 cut(s)	110, 205, 214, 229, 319, 479, 492, 520, 529
SfaNI	GCATC	4 cut(s)	17, 191, 425, 472
SpeI	ACTAGT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	30
SspMI	CTAG	4 cut(s)	228, 396, 563, 568
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	141, 420
TaaI	ACNGT	2 cut(s)	172, 371
TaiI	ACGT	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	3 cut(s)	96, 265, 544
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	172
TspGWI	ACGGA	2 cut(s)	34, 400
TspRI	CASTG	3 cut(s)	96, 265, 544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XspI	CTAG	4 cut(s)	228, 396, 563, 568
ZraI	GACGTC	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.