Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

48579511 .. 48580242

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTGCAACAACTGCTATGCAATCAGTCCTTGGAAGCTCCATTGCCTACGGAGCTGCAGGCAACAACAGACCACTGAACCTATGGAGTACCGTTCCGGCTAGTTATGCAGTTTCGAGCCATCTCAGGGTTCGCTCAATGGCCGAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAAAAGCCTCAAAGGATCCCCAGCCTGCAGCACCATCTCCCAAGTTTTCAGACAGAATCAACGGCAGGCTGGCAATGGTGGGCTTCGTTGGAGCTCTGGCTGTCGAACTATCAAAGGGGCAAGATGTGTTTGCTCAGATATCCAACGGCCCCGGGGTACCTTTGTTCATCGGCACAAGTATTTTGCTATCAGTAGCATCCTTGGTTCCTCTATTGAAAGGAGTGACCGTGGAGTCCAAATCCGACGGGATCTTTACGTCGGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAGTACGTGACCGGCAGTGCCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

175

Amino Acids

18.12

Weight (kDa)

9.34

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	77 - 167	9.5e-10	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	409
Acc65I	GGTACC	1 cut(s)	334
AccB1I	GGYRCC	1 cut(s)	334
AclWI	GGATC	3 cut(s)	188, 201, 434
AcoI	YGGCCR	2 cut(s)	141, 465
AfaI	GTAC	3 cut(s)	91, 336, 503
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	5 cut(s)	39, 56, 272, 448, 485
AluI	AGCT	5 cut(s)	39, 56, 272, 448, 485
Alw21I	GWGCWC	2 cut(s)	274, 450
AlwI	GGATC	3 cut(s)	188, 201, 434
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	4 cut(s)	141, 325, 465, 489
ApeKI	GCWGC	3 cut(s)	5, 56, 206
Asp718I	GGTACC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	2 cut(s)	330, 331
AsuHPI	GGTGA	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	520
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
BalI	TGGCCA	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	334
BanII	GRGCYC	2 cut(s)	274, 450
Bbv12I	GWGCWC	2 cut(s)	274, 450
BbvI	GCAGC	2 cut(s)	43, 218
BccI	CCATC	3 cut(s)	129, 143, 220
BceAI	ACGGC	2 cut(s)	256, 340
BcnI	CCSGG	2 cut(s)	330, 331
BfaI	CTAG	2 cut(s)	102, 521
BfmI	CTRYAG	2 cut(s)	57, 204
BisI	GCNGC	3 cut(s)	6, 57, 207
BlsI	GCNGC	3 cut(s)	7, 58, 208
Bme1390I	CCNGG	2 cut(s)	330, 331
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	4 cut(s)	195, 328, 336, 384
BmrFI	CCNGG	2 cut(s)	330, 331
BmsI	GCATC	2 cut(s)	383, 430
BpuMI	CCSGG	2 cut(s)	330, 331
BsaAI	YACGTR	1 cut(s)	505
BsaJI	CCNNGG	7 cut(s)	31, 144, 328, 329, 330, 378, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	509
Bse3DI	GCAATG	2 cut(s)	42, 258
BseDI	CCNNGG	7 cut(s)	31, 144, 328, 329, 330, 378, 405
BseGI	GGATG	3 cut(s)	154, 374, 445
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	2 cut(s)	42, 258
BseMII	CTCAG	2 cut(s)	139, 326
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	2 cut(s)	43, 218
BseYI	CCCAGC	1 cut(s)	198
BshFI	GGCC	4 cut(s)	143, 327, 467, 491
BshNI	GGYRCC	1 cut(s)	334
BsiHKAI	GWGCWC	2 cut(s)	274, 450
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	3 cut(s)	98, 330, 510
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	4 cut(s)	143, 327, 467, 491
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	3 cut(s)	274, 450, 520
Bsp143I	GATC	2 cut(s)	193, 426
BspANI	GGCC	4 cut(s)	143, 327, 467, 491
BspCNI	CTCAG	2 cut(s)	138, 325
BspLI	GGNNCC	4 cut(s)	195, 328, 336, 384
BspMAI	CTGCAG	2 cut(s)	61, 208
BspPI	GGATC	3 cut(s)	188, 201, 434
BspT107I	GGYRCC	1 cut(s)	334
BsrDI	GCAATG	2 cut(s)	42, 258
BsrFI	RCCGGY	1 cut(s)	509
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	7 cut(s)	31, 144, 328, 329, 330, 378, 405
BssMI	GATC	2 cut(s)	193, 426
BssT1I	CCWWGG	2 cut(s)	31, 378
Bst4CI	ACNGT	3 cut(s)	94, 175, 406
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	4 cut(s)	61, 204, 245, 249
BstDEI	CTNAG	2 cut(s)	125, 312
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	154, 374, 445
BstKTI	GATC	2 cut(s)	196, 429
BstMBI	GATC	2 cut(s)	193, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 53, 107
BstSCI	CCNGG	2 cut(s)	328, 329
BstSFI	CTRYAG	2 cut(s)	57, 204
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	43, 218
BstX2I	RGATCY	2 cut(s)	193, 426
BstYI	RGATCY	2 cut(s)	193, 426
BsuRI	GGCC	4 cut(s)	143, 327, 467, 491
BtgI	CCRYGG	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	154, 374, 445
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	2 cut(s)	74, 520
Cac8I	GCNNGC	4 cut(s)	61, 204, 245, 249
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	326
Cfr9I	CCCGGG	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	90, 335, 502
CviAII	CATG	1 cut(s)	469
CviQI	GTAC	3 cut(s)	90, 335, 502
DdeI	CTNAG	2 cut(s)	125, 312
DpnI	GATC	2 cut(s)	195, 428
DpnII	GATC	2 cut(s)	193, 426
DrdI	GACNNNNNNGTC	1 cut(s)	409
DseDI	GACNNNNNNGTC	1 cut(s)	409
EaeI	YGGCCR	2 cut(s)	141, 465
Ecl136II	GAGCTC	2 cut(s)	272, 448
Eco130I	CCWWGG	2 cut(s)	31, 378
Eco24I	GRGCYC	2 cut(s)	274, 450
Eco32I	GATATC	1 cut(s)	318
Eco53kI	GAGCTC	2 cut(s)	272, 448
Eco88I	CYCGRG	1 cut(s)	329
EcoICRI	GAGCTC	2 cut(s)	272, 448
EcoRV	GATATC	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	31, 378
EcoT38I	GRGCYC	2 cut(s)	274, 450
ErhI	CCWWGG	2 cut(s)	31, 378
FaeI	CATG	1 cut(s)	472
FaiI	YATR	4 cut(s)	20, 85, 108, 470
FatI	CATG	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	6, 57, 207
FokI	GGATG	3 cut(s)	161, 361, 452
FriOI	GRGCYC	2 cut(s)	274, 450
Fsp4HI	GCNGC	3 cut(s)	6, 57, 207
FspBI	CTAG	2 cut(s)	102, 521
GluI	GCNGC	3 cut(s)	6, 57, 207
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	4 cut(s)	143, 327, 467, 491
HapII	CCGG	3 cut(s)	98, 330, 510
Hin1II	CATG	1 cut(s)	472
HinfI	GANTC	2 cut(s)	234, 410
HpaII	CCGG	3 cut(s)	98, 330, 510
HphI	GGTGA	1 cut(s)	487
Hpy188I	TCNGA	4 cut(s)	229, 315, 421, 439
Hpy188III	TCNNGA	1 cut(s)	451
Hpy99I	CGWCG	2 cut(s)	425, 439
HpyAV	CCTTC	2 cut(s)	453, 502
HpyCH4III	ACNGT	3 cut(s)	94, 175, 406
HpyCH4IV	ACGT	2 cut(s)	434, 504
HpyCH4V	TGCA	6 cut(s)	8, 22, 59, 110, 206, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 53, 107
HpyF3I	CTNAG	2 cut(s)	125, 312
HpySE526I	ACGT	2 cut(s)	434, 504
Hsp92II	CATG	1 cut(s)	472
KpnI	GGTACC	1 cut(s)	338
Kzo9I	GATC	2 cut(s)	193, 426
LmnI	GCTCC	3 cut(s)	44, 53, 269
Lsp1109I	GCAGC	2 cut(s)	43, 218
LweI	GCATC	2 cut(s)	383, 430
MaeI	CTAG	2 cut(s)	102, 521
MaeII	ACGT	2 cut(s)	434, 504
MaeIII	GTNAC	3 cut(s)	175, 400, 505
MalI	GATC	2 cut(s)	195, 428
MboI	GATC	2 cut(s)	193, 426
MflI	RGATCY	2 cut(s)	193, 426
MhlI	GDGCHC	3 cut(s)	274, 450, 520
MlsI	TGGCCA	1 cut(s)	467
MluNI	TGGCCA	1 cut(s)	467
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	4 cut(s)	247, 345, 417, 444
MnlI	CCTC	3 cut(s)	139, 196, 396
Mox20I	TGGCCA	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	467
Msp20I	TGGCCA	1 cut(s)	467
MspI	CCGG	3 cut(s)	98, 330, 510
MspR9I	CCNGG	2 cut(s)	330, 331
MwoI	GCNNNNNNNGC	3 cut(s)	14, 53, 107
NciI	CCSGG	2 cut(s)	330, 331
NdeII	GATC	2 cut(s)	193, 426
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	4 cut(s)	195, 328, 336, 384
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	400, 505
PfeI	GAWTC	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	7, 58, 208
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Ppu21I	YACGTR	1 cut(s)	505
Psp124BI	GAGCTC	2 cut(s)	274, 450
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	4 cut(s)	195, 328, 336, 384
PspPI	GGNCC	1 cut(s)	326
PstI	CTGCAG	2 cut(s)	61, 208
PsuI	RGATCY	2 cut(s)	193, 426
RsaI	GTAC	3 cut(s)	91, 336, 503
RsaNI	GTAC	3 cut(s)	90, 335, 502
SacI	GAGCTC	2 cut(s)	274, 450
SatI	GCNGC	3 cut(s)	6, 57, 207
Sau3AI	GATC	2 cut(s)	193, 426
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	330, 331
SduI	GDGCHC	3 cut(s)	274, 450, 520
SfaNI	GCATC	2 cut(s)	383, 430
SfcI	CTRYAG	2 cut(s)	57, 204
SmaI	CCCGGG	1 cut(s)	331
SspMI	CTAG	2 cut(s)	102, 521
SstI	GAGCTC	2 cut(s)	274, 450
StyD4I	CCNGG	2 cut(s)	328, 329
StyI	CCWWGG	2 cut(s)	31, 378
TaaI	ACNGT	3 cut(s)	94, 175, 406
TaiI	ACGT	2 cut(s)	437, 507
TaqI	TCGA	2 cut(s)	116, 282
TfiI	GAWTC	1 cut(s)	234
TscAI	CASTG	2 cut(s)	81, 520
TseFI	GTSAC	2 cut(s)	400, 505
TseI	GCWGC	3 cut(s)	5, 56, 206
Tsp45I	GTSAC	2 cut(s)	400, 505
TspDTI	ATGAA	1 cut(s)	334
TspGWI	ACGGA	1 cut(s)	66
TspMI	CCCGGG	1 cut(s)	329
TspRI	CASTG	2 cut(s)	81, 520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XmaI	CCCGGG	1 cut(s)	329
XspI	CTAG	2 cut(s)	102, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.