Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

52616610 .. 52617216

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG296800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCAGAGGATGGTCAAAAGAAGAAACCAACAGCTGTAACAAAAGCCTCAAAGAATCCACAGCCTGCAGCCCCTTCACCATCTCCTCCTCCTCCTCCTTCTTCGAAGTTTTCAGACGTGTTTGCATTCAACGAGCCGGCACCTGAGAGAATCAACGGCAGGCTGGCAATGGTGGGCTTCGTTGCGGCTCTAGCTGTCGAACTCTCCAAGGGGCCAGATGTGTTTGCTCAGATATCCAACGGCCCCGGAGTACCATTGTTCATCGGCACAAGTATTTTGCTATCAGTAGCATCCTTGGTTCCTCTATTGAAAGGAGTGACCGTGGAGTCCAAATCCGACGGGATCTTTACCTCGGATGCAGGGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAGTACTTGACCGGCAGTGCCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

147

Amino Acids

15.12

Weight (kDa)

7.99

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	47 - 139	3.9e-08	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	139
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	381
AfaI	GTAC	2 cut(s)	252, 419
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	130, 310
AjiI	CACGTC	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AluBI	AGCT	3 cut(s)	35, 194, 401
AluI	AGCT	3 cut(s)	35, 194, 401
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	4 cut(s)	212, 241, 381, 405
ApeKI	GCWGC	1 cut(s)	68
AspS9I	GGNCC	2 cut(s)	212, 242
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	69, 403
AsuII	TTCGAA	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	2 cut(s)	5, 88
BceAI	ACGGC	2 cut(s)	172, 256
BcnI	CCSGG	1 cut(s)	246
BfaI	CTAG	2 cut(s)	191, 437
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	2 cut(s)	69, 186
BlsI	GCNGC	2 cut(s)	70, 187
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	246
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	212, 242
BmiI	GGNNCC	4 cut(s)	141, 213, 244, 300
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	2 cut(s)	299, 346
Bpu14I	TTCGAA	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	246
BsaJI	CCNNGG	5 cut(s)	207, 244, 294, 321, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bse118I	RCCGGY	2 cut(s)	136, 425
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	5 cut(s)	207, 244, 294, 321, 351
BseGI	GGATG	3 cut(s)	16, 290, 361
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	135, 242
BseRI	GAGGAG	4 cut(s)	75, 78, 81, 84
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	80
BshFI	GGCC	4 cut(s)	214, 243, 383, 407
BshNI	GGYRCC	1 cut(s)	139
BsiSI	CCGG	3 cut(s)	137, 246, 426
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	4 cut(s)	214, 243, 383, 407
Bsp119I	TTCGAA	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	366, 436
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	4 cut(s)	214, 243, 383, 407
BspCNI	CTCAG	2 cut(s)	136, 241
BspLI	GGNNCC	4 cut(s)	141, 213, 244, 300
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	350
BspT104I	TTCGAA	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	2 cut(s)	136, 425
BssAI	RCCGGY	2 cut(s)	136, 425
BssECI	CCNNGG	5 cut(s)	207, 244, 294, 321, 351
BssMI	GATC	1 cut(s)	342
BssT1I	CCWWGG	2 cut(s)	207, 294
Bst4CI	ACNGT	1 cut(s)	322
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	4 cut(s)	66, 138, 161, 165
BstDEI	CTNAG	2 cut(s)	144, 228
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	16, 290, 361
BstKTI	GATC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	214, 243, 383, 407
BtgI	CCRYGG	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	3 cut(s)	16, 290, 361
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	4 cut(s)	66, 138, 161, 165
Cfr10I	RCCGGY	2 cut(s)	136, 425
Cfr13I	GGNCC	2 cut(s)	212, 242
Csp6I	GTAC	2 cut(s)	251, 418
CviAII	CATG	1 cut(s)	385
CviQI	GTAC	2 cut(s)	251, 418
DdeI	CTNAG	2 cut(s)	144, 228
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	207, 294
Eco24I	GRGCYC	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	207, 294
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	2 cut(s)	207, 294
FaeI	CATG	1 cut(s)	388
FaiI	YATR	1 cut(s)	386
FatI	CATG	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	69, 186
FokI	GGATG	3 cut(s)	23, 277, 368
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	69, 186
FspBI	CTAG	2 cut(s)	191, 437
GluI	GCNGC	2 cut(s)	69, 186
HaeIII	GGCC	4 cut(s)	214, 243, 383, 407
HapII	CCGG	3 cut(s)	137, 246, 426
Hin1II	CATG	1 cut(s)	388
HinfI	GANTC	3 cut(s)	55, 150, 326
HpaII	CCGG	3 cut(s)	137, 246, 426
HphI	GGTGA	2 cut(s)	69, 403
Hpy188I	TCNGA	4 cut(s)	115, 231, 337, 355
Hpy188III	TCNNGA	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	341
HpyAV	CCTTC	4 cut(s)	84, 108, 369, 418
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	68, 125, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	2 cut(s)	144, 228
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	388
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	342
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	2 cut(s)	299, 346
MaeI	CTAG	2 cut(s)	191, 437
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	37, 316
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	2 cut(s)	34, 93
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	366, 436
MlsI	TGGCCA	1 cut(s)	383
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	261, 360
MnlI	CCTC	7 cut(s)	58, 96, 99, 102, 105, 312, 361
Mox20I	TGGCCA	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	3 cut(s)	137, 246, 426
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	191
NaeI	GCCGGC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	342
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	4 cut(s)	141, 213, 244, 300
NmuCI	GTSAC	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	104
PctI	GAATGC	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	55, 150
PkrI	GCNGC	2 cut(s)	70, 187
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PspN4I	GGNNCC	4 cut(s)	141, 213, 244, 300
PspPI	GGNCC	2 cut(s)	212, 242
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	252, 419
RsaNI	GTAC	2 cut(s)	251, 418
SatI	GCNGC	2 cut(s)	69, 186
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	2 cut(s)	212, 242
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	366, 436
SetI	ASST	7 cut(s)	37, 120, 145, 196, 353, 380, 403
SfaNI	GCATC	2 cut(s)	299, 346
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	104
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	2 cut(s)	191, 437
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	2 cut(s)	207, 294
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	104, 198
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	55, 150
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	250
TspRI	CASTG	1 cut(s)	436
XspI	CTAG	2 cut(s)	191, 437
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.