Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

48575997 .. 48576736

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTGCAACATCCACTATGCAATCAATCCTTGGAAGCTCTGTCACTTATGGAAGAGTTGCAGGCAAGAACAGATCTCTGAACCTGCAGAGTACTCCTCCTGCTAGTTATGCAGTTTCAAGCTATCTCAGGGTTCGCTCTATGGCAGAGGATGGTCAAAAGAAGCAACCAACAGCTGTAACAAAAGCCTCAAAGAATCCACAGCCTGCAGCCCCTTCACCATCTCCTCCTCCTTCTCCGAAGTTTTCAGACAGAATCAACGGCAGGCTGGCAATGGTGGGCTTCGTTGCGGCTCTAGCTGTCGAACTCTCCAAGGGGCAAGATGTGTTTGCTCAGATATCCAACGGCCCCGGAGTACCATTGTTCATCGGCACAAGTATTTTGCTATCAGTAGCATCCTTGGTTCCTCTATTGAAAGGAGTGACCGTGGAATCCAAATCCGACGGGATCTTTACCTCGGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAGTACGTGACCGGCAGTGCCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

182

Amino Acids

18.87

Weight (kDa)

9.79

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	84 - 174	9.1e-09	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	486
AfaI	GTAC	3 cut(s)	94, 357, 524
AgsI	TTSAA	2 cut(s)	120, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	6 cut(s)	39, 123, 176, 299, 469, 506
AluI	AGCT	6 cut(s)	39, 123, 176, 299, 469, 506
Alw21I	GWGCWC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	3 cut(s)	346, 486, 510
ApeKI	GCWGC	2 cut(s)	5, 209
AspS9I	GGNCC	1 cut(s)	347
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	210, 508
BaeGI	GKGCMC	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	2 cut(s)	146, 229
BceAI	ACGGC	2 cut(s)	277, 361
BcnI	CCSGG	1 cut(s)	351
BfaI	CTAG	3 cut(s)	105, 296, 542
BfmI	CTRYAG	2 cut(s)	86, 207
BfuAI	ACCTGC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	3 cut(s)	6, 210, 291
BlsI	GCNGC	3 cut(s)	7, 211, 292
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	349, 405
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	2 cut(s)	404, 451
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpuMI	CCSGG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	526
BsaJI	CCNNGG	6 cut(s)	31, 312, 349, 399, 426, 456
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bse118I	RCCGGY	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	6 cut(s)	31, 312, 349, 399, 426, 456
BseGI	GGATG	4 cut(s)	11, 157, 395, 466
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	142, 347
BseRI	GAGGAG	3 cut(s)	87, 216, 219
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	1 cut(s)	221
BshFI	GGCC	3 cut(s)	348, 488, 512
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	2 cut(s)	351, 531
BsnI	GGCC	3 cut(s)	348, 488, 512
Bsp1286I	GDGCHC	2 cut(s)	471, 541
Bsp143I	GATC	2 cut(s)	74, 447
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	3 cut(s)	348, 488, 512
BspCNI	CTCAG	2 cut(s)	141, 346
BspLI	GGNNCC	2 cut(s)	349, 405
BspMAI	CTGCAG	2 cut(s)	90, 211
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	6 cut(s)	31, 312, 349, 399, 426, 456
BssMI	GATC	2 cut(s)	74, 447
BssT1I	CCWWGG	3 cut(s)	31, 312, 399
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	4 cut(s)	64, 207, 266, 270
BstDEI	CTNAG	2 cut(s)	128, 333
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	11, 157, 395, 466
BstKTI	GATC	2 cut(s)	77, 450
BstMBI	GATC	2 cut(s)	74, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 296
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	2 cut(s)	86, 207
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	74, 447
BstYI	RGATCY	2 cut(s)	74, 447
BsuRI	GGCC	3 cut(s)	348, 488, 512
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	11, 157, 395, 466
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	541
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	4 cut(s)	64, 207, 266, 270
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	93, 356, 523
CviAII	CATG	1 cut(s)	490
CviQI	GTAC	3 cut(s)	93, 356, 523
DdeI	CTNAG	2 cut(s)	128, 333
DpnI	GATC	2 cut(s)	76, 449
DpnII	GATC	2 cut(s)	74, 447
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	3 cut(s)	31, 312, 399
Eco24I	GRGCYC	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	339
EcoT14I	CCWWGG	3 cut(s)	31, 312, 399
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	3 cut(s)	31, 312, 399
FaeI	CATG	1 cut(s)	493
FaiI	YATR	5 cut(s)	20, 51, 111, 143, 491
FatI	CATG	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	6, 210, 291
FokI	GGATG	3 cut(s)	164, 382, 473
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	3 cut(s)	6, 210, 291
FspBI	CTAG	3 cut(s)	105, 296, 542
GluI	GCNGC	3 cut(s)	6, 210, 291
HaeIII	GGCC	3 cut(s)	348, 488, 512
HapII	CCGG	2 cut(s)	351, 531
Hin1II	CATG	1 cut(s)	493
HinfI	GANTC	3 cut(s)	196, 255, 431
HpaII	CCGG	2 cut(s)	351, 531
HphI	GGTGA	2 cut(s)	210, 508
Hpy188I	TCNGA	6 cut(s)	81, 240, 250, 336, 442, 460
Hpy188III	TCNNGA	1 cut(s)	472
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	4 cut(s)	225, 243, 474, 523
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	7 cut(s)	8, 22, 62, 88, 113, 209, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 296
HpyF3I	CTNAG	2 cut(s)	128, 333
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	74, 447
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	2 cut(s)	404, 451
MaeI	CTAG	3 cut(s)	105, 296, 542
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	4 cut(s)	43, 178, 421, 526
MalI	GATC	2 cut(s)	76, 449
MboI	GATC	2 cut(s)	74, 447
MboII	GAAGA	1 cut(s)	66
MflI	RGATCY	2 cut(s)	74, 447
MhlI	GDGCHC	2 cut(s)	471, 541
MlsI	TGGCCA	1 cut(s)	488
MluNI	TGGCCA	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	366, 465
MnlI	CCTC	7 cut(s)	108, 142, 199, 237, 240, 417, 466
Mox20I	TGGCCA	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	351, 531
MspR9I	CCNGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	110, 296
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	2 cut(s)	74, 447
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	2 cut(s)	349, 405
NmuCI	GTSAC	3 cut(s)	43, 421, 526
PfeI	GAWTC	3 cut(s)	196, 255, 431
PkrI	GCNGC	3 cut(s)	7, 211, 292
Ppu21I	YACGTR	1 cut(s)	526
Psp124BI	GAGCTC	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	349, 405
PspPI	GGNCC	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	90, 211
PsuI	RGATCY	2 cut(s)	74, 447
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	3 cut(s)	94, 357, 524
RsaNI	GTAC	3 cut(s)	93, 356, 523
SacI	GAGCTC	1 cut(s)	471
SatI	GCNGC	3 cut(s)	6, 210, 291
Sau3AI	GATC	2 cut(s)	74, 447
Sau96I	GGNCC	1 cut(s)	347
ScaI	AGTACT	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	471, 541
SfaNI	GCATC	2 cut(s)	404, 451
SfcI	CTRYAG	2 cut(s)	86, 207
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	3 cut(s)	105, 296, 542
SstI	GAGCTC	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	3 cut(s)	31, 312, 399
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	1 cut(s)	303
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	3 cut(s)	196, 255, 431
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	3 cut(s)	43, 421, 526
TseI	GCWGC	2 cut(s)	5, 209
Tsp45I	GTSAC	3 cut(s)	43, 421, 526
TspDTI	ATGAA	1 cut(s)	355
TspRI	CASTG	1 cut(s)	541
XspI	CTAG	3 cut(s)	105, 296, 542
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.