Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

28550144 .. 28552325

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0180600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGTAGAAGTTTCAGTTGCCACCCGCGTTCAAATCAAACCCTTTGTTTCTGCAAGCCCGCATCTTCCAATTTGTCGCAAAATAACATGGAAAATTTGTGGAGCTGTGGCATCATCTGATTCCTCATCTTCTTCTAGTTGTGGGTATAGCAGGTATGATAAACAAACGATAGATGATGGGCAAGTAGTATTGCCAAAGAAGAAGAAGAAGAGAAGGAGGGTGTTCTTTCTAGATGTTAATCCTCTCTGTTATGCTGGAAGTAAACCCAGCTTACACTCTTTTGCTCGTTGGGTCTCCTTGTTTTTTAAGCAAGTTAGCCTCTCTGATCCTGTTATCGCTGTTGTTGATGGTGAAAGAGGAAGCGAGCACCGCCGGCAGTTGCTACCTTCATATAAAACACACAGGTGGAAGTTGTTAAGACAGTTTTCAAGGGGTCATGTTGGAAGGTCACACGGAGTCATCAAAGATGTTTTTACAAAATGCAATGTGCCTGTCATAAAAATAGATGGCCAGGAAGCGGATGATGTTATAGCTACTCTTGTGGAACAAGTTCTACAAATAGGATATCAAGTGGTGATTGCGTCTCCTGATAAAGATTTTAAGCAATTGCTTTCAGAAGATGTCCAAATCGTAATGCCCCTGGACGATTTAAAGCGCTGGTCCTTTTACACCCTTAAGCACTACATGGCTCAGTATAATTGTGATCCATGCTGTGATTTGAGCCTCAGATGCATTATGGGAGATCAAGCTGATGGTGTTCCTGGGATCCAACATCTGGCTCCTGGGTTTGGTCAGAAGACTGCCCTAAAGCTCTTGAAAAAACATGGCTCATTGAAAAATTTACTAAACATAGCTTCAGTAAGAACTGTGGGCAGACAGTATGCGCAAGATGCTCTTACAAAGTATGCGGATTATCTACGAAGGAACTATGAGATTCTTTCCCTTAGAAGGGATGTCAATGTTCAACTTAAAGAGGAGTGGCTTGTTCCAAGAGACACAAGCAATGATTCAAAAACTTTGTCAAACTTCTTTAAATTCTTGGAAGAAACCGAGAAGTTCAGTCATCAAACTGGATCTATTTCAAATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

363

Amino Acids

41.12

Weight (kDa)

9.4

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
5_3_exonuc_N	PF02739	92 - 225	1.8e-21	5'-3' exonuclease, N-terminal resolvase-like domain
5_3_exonuc	PF01367	244 - 329	2.1e-13	5'-3' exonuclease, C-terminal SAM fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	885
Acc36I	ACCTGC	1 cut(s)	141
AccB7I	CCANNNNNTGG	1 cut(s)	775
AccII	CGCG	1 cut(s)	27
AciI	CCGC	5 cut(s)	25, 59, 370, 518, 908
AclWI	GGATC	5 cut(s)	320, 698, 760, 773, 1081
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	93, 838, 1034
AcuI	CTGAAG	1 cut(s)	840
AfeI	AGCGCT	1 cut(s)	656
AfiI	CCNNNNNNNGG	5 cut(s)	517, 775, 788, 948, 949
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	7 cut(s)	32, 429, 817, 835, 965, 1011, 1083
AjnI	CCWGG	4 cut(s)	510, 639, 760, 781
AleI	CACNNNNGTG	1 cut(s)	403
AluBI	AGCT	6 cut(s)	104, 270, 533, 749, 811, 854
AluI	AGCT	6 cut(s)	104, 270, 533, 749, 811, 854
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	3 cut(s)	298, 588, 987
AlwI	GGATC	5 cut(s)	320, 698, 760, 773, 1081
Aor51HI	AGCGCT	1 cut(s)	656
AoxI	GGCC	1 cut(s)	508
ApoI	RAATTY	3 cut(s)	93, 838, 1034
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
Asp700I	GAANNNNTTC	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	657, 886
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	362, 586
AvaII	GGWCC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	510
BamHI	GGATCC	1 cut(s)	765
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	4 cut(s)	170, 341, 500, 746
BciT130I	CCWGG	4 cut(s)	512, 641, 762, 783
BcoDI	GTCTC	3 cut(s)	298, 588, 987
BfaI	CTAG	2 cut(s)	135, 230
BfoI	RGCGCY	1 cut(s)	658
BfrI	CTTAAG	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	141
Bme1390I	CCNGG	4 cut(s)	512, 641, 762, 783
Bme18I	GGWCC	1 cut(s)	660
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	2 cut(s)	767, 780
BmrFI	CCNGG	4 cut(s)	512, 641, 762, 783
BmsI	GCATC	4 cut(s)	70, 119, 719, 880
BpiI	GAAGAC	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	639, 761, 782
Bsc4I	CCNNNNNNNGG	5 cut(s)	517, 775, 788, 948, 949
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	1075
Bse3DI	GCAATG	2 cut(s)	490, 1009
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	4 cut(s)	512, 641, 762, 783
BseDI	CCNNGG	3 cut(s)	639, 761, 782
BseGI	GGATG	2 cut(s)	526, 958
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	5 cut(s)	517, 775, 788, 948, 949
BseMI	GCAATG	2 cut(s)	490, 1009
BseMII	CTCAG	2 cut(s)	704, 739
BseNI	ACTGG	1 cut(s)	1075
BseRI	GAGGAG	1 cut(s)	989
BseYI	CCCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	5 cut(s)	517, 775, 788, 948, 949
BsmAI	GTCTC	3 cut(s)	298, 588, 987
BsmBI	CGTCTC	1 cut(s)	588
BsnI	GGCC	1 cut(s)	510
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	325, 703, 742, 765, 1073
BspACI	CCGC	5 cut(s)	25, 59, 370, 518, 908
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	703, 738
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	2 cut(s)	767, 780
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	5 cut(s)	320, 698, 760, 773, 1081
BspTI	CTTAAG	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	2 cut(s)	490, 1009
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	1075
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	639, 761, 782
BssMI	GATC	5 cut(s)	325, 703, 742, 765, 1073
Bst2UI	CCWGG	4 cut(s)	512, 641, 762, 783
Bst4CI	ACNGT	3 cut(s)	423, 868, 879
Bst6I	CTCTTC	1 cut(s)	203
BstAFI	CTTAAG	1 cut(s)	674
BstC8I	GCNNGC	4 cut(s)	55, 59, 365, 374
BstDEI	CTNAG	3 cut(s)	690, 725, 944
BstF5I	GGATG	2 cut(s)	526, 958
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	2 cut(s)	657, 886
BstKTI	GATC	5 cut(s)	328, 706, 745, 768, 1076
BstMAI	GTCTC	3 cut(s)	298, 588, 987
BstMBI	GATC	5 cut(s)	325, 703, 742, 765, 1073
BstMWI	GCNNNNNNNGC	4 cut(s)	369, 373, 729, 890
BstNI	CCWGG	4 cut(s)	512, 641, 762, 783
BstSCI	CCNGG	4 cut(s)	510, 639, 760, 781
BstUI	CGCG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	2 cut(s)	765, 1073
BstYI	RGATCY	2 cut(s)	765, 1073
BsuRI	GGCC	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	526, 958
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	4 cut(s)	55, 59, 365, 374
CfoI	GCGC	2 cut(s)	657, 886
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	1 cut(s)	660
CseI	GACGC	1 cut(s)	570
CviAII	CATG	5 cut(s)	87, 437, 685, 708, 824
DdeI	CTNAG	3 cut(s)	690, 725, 944
DpnI	GATC	5 cut(s)	327, 705, 744, 767, 1075
DpnII	GATC	5 cut(s)	325, 703, 742, 765, 1073
DraI	TTTAAA	2 cut(s)	651, 1033
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	660
Eco47III	AGCGCT	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	840
EcoRII	CCWGG	4 cut(s)	510, 639, 760, 781
EcoRV	GATATC	1 cut(s)	566
EcoT22I	ATGCAT	1 cut(s)	734
Esp3I	CGTCTC	1 cut(s)	588
FaeI	CATG	5 cut(s)	90, 440, 688, 711, 827
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FatI	CATG	5 cut(s)	86, 436, 684, 707, 823
FauI	CCCGC	2 cut(s)	32, 66
FokI	GGATG	2 cut(s)	533, 965
FspBI	CTAG	2 cut(s)	135, 230
FspI	TGCGCA	1 cut(s)	885
GlaI	GCGC	2 cut(s)	656, 885
GsaI	CCCAGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	373
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	2 cut(s)	657, 886
Hin1II	CATG	5 cut(s)	90, 440, 688, 711, 827
Hin6I	GCGC	2 cut(s)	655, 884
HinP1I	GCGC	2 cut(s)	655, 884
HinfI	GANTC	4 cut(s)	119, 456, 934, 1007
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	2 cut(s)	362, 586
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	5 cut(s)	118, 325, 616, 728, 795
Hpy188III	TCNNGA	3 cut(s)	230, 587, 814
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	5 cut(s)	207, 396, 438, 915, 942
HpyCH4III	ACNGT	3 cut(s)	423, 868, 879
HpyCH4V	TGCA	3 cut(s)	53, 483, 732
HpyF10VI	GCNNNNNNNGC	4 cut(s)	369, 373, 729, 890
HpyF3I	CTNAG	3 cut(s)	690, 725, 944
Hsp92II	CATG	5 cut(s)	90, 440, 688, 711, 827
HspAI	GCGC	2 cut(s)	655, 884
KroI	GCCGGC	1 cut(s)	372
KroNI	GCCGGC	1 cut(s)	374
Kzo9I	GATC	5 cut(s)	325, 703, 742, 765, 1073
LmnI	GCTCC	2 cut(s)	101, 784
LweI	GCATC	4 cut(s)	70, 119, 719, 880
MaeI	CTAG	2 cut(s)	135, 230
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	5 cut(s)	327, 705, 744, 767, 1075
MboI	GATC	5 cut(s)	325, 703, 742, 765, 1073
MfeI	CAATTG	1 cut(s)	605
MflI	RGATCY	2 cut(s)	765, 1073
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	2 cut(s)	421, 793
MnlI	CCTC	7 cut(s)	133, 210, 252, 329, 350, 734, 967
Mox20I	TGGCCA	1 cut(s)	510
Mph1103I	ATGCAT	1 cut(s)	734
MroNI	GCCGGC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
MslI	CAYNNNNRTG	1 cut(s)	403
Msp20I	TGGCCA	1 cut(s)	510
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	4 cut(s)	512, 641, 762, 783
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	4 cut(s)	512, 641, 762, 783
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	4 cut(s)	369, 373, 729, 890
NaeI	GCCGGC	1 cut(s)	374
NdeII	GATC	5 cut(s)	325, 703, 742, 765, 1073
NgoMIV	GCCGGC	1 cut(s)	372
NlaIII	CATG	5 cut(s)	90, 440, 688, 711, 827
NlaIV	GGNNCC	2 cut(s)	767, 780
NmuCI	GTSAC	1 cut(s)	447
NsbI	TGCGCA	1 cut(s)	885
NsiI	ATGCAT	1 cut(s)	734
OliI	CACNNNNGTG	1 cut(s)	403
PdiI	GCCGGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	549
PfeI	GAWTC	3 cut(s)	119, 934, 1007
PflMI	CCANNNNNTGG	1 cut(s)	775
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
Psp6I	CCWGG	4 cut(s)	510, 639, 760, 781
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	4 cut(s)	510, 639, 760, 781
PspN4I	GGNNCC	2 cut(s)	767, 780
PspPI	GGNCC	1 cut(s)	660
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PsuI	RGATCY	2 cut(s)	765, 1073
RseI	CAYNNNNRTG	1 cut(s)	403
SaqAI	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
Sau3AI	GATC	5 cut(s)	325, 703, 742, 765, 1073
Sau96I	GGNCC	1 cut(s)	660
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	4 cut(s)	512, 641, 762, 783
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	4 cut(s)	70, 119, 719, 880
SinI	GGWCC	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
SsiI	CCGC	5 cut(s)	25, 59, 370, 518, 908
SspMI	CTAG	2 cut(s)	135, 230
StyD4I	CCNGG	4 cut(s)	510, 639, 760, 781
TaaI	ACNGT	3 cut(s)	423, 868, 879
TasI	AATT	6 cut(s)	69, 93, 605, 697, 838, 1034
TfiI	GAWTC	3 cut(s)	119, 934, 1007
Tru1I	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
Tru9I	TTAA	8 cut(s)	237, 306, 416, 600, 650, 675, 969, 1032
TseFI	GTSAC	1 cut(s)	447
Tsp45I	GTSAC	1 cut(s)	447
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	1 cut(s)	468
Van91I	CCANNNNNTGG	1 cut(s)	775
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	3 cut(s)	93, 838, 1034
XbaI	TCTAGA	1 cut(s)	229
XmnI	GAANNNNTTC	1 cut(s)	549
XspI	CTAG	2 cut(s)	135, 230
Zsp2I	ATGCAT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.