Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

49005286 .. 49005937

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAATCAATCCTTGGAAGCTCCATTACTTGCGAAGCTGCAGGCAAGAACAGATCTCTGAACCTACAGAGTACTGTTCCTGCTAGTTATGCAGTTTCAAGCTATCTCCGCGTGCGCTCTATGGCCGAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAAAAGCCTCAAAGAATCCACAGCCAGCTGCAACTCCTTCACCTTCACCTCCTCCCCCTTCTCCTAAGTTTTCGGAAGTGTTTGCATTCAGTGGACTAGCTCCAGAGAGAATCAACAGCAGGCTGGCAATGGTGGGCTTCGTTGCCGCTCTGGCAGTTGAACTATCTAAGGGGCAAGATGTGTTTGCTCAGATATCCAATGGCCCCGGAGTCCCATTGTTCATCGGCACAAGTGTTTTGCTATCAGTGGCATCCTTGGTTCCTCTATTGAAAGGAGTGAGCGTGAAGTCCAAATCCGACGGGATCATGACCTCAGAGGCAGAACTCATAAATGGATGGTTGGCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

169

Amino Acids

17.54

Weight (kDa)

9.56

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	308
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	109, 306
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	2 cut(s)	123, 501
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	3 cut(s)	99, 320, 430
AluBI	AGCT	5 cut(s)	21, 38, 102, 188, 260
AluI	AGCT	5 cut(s)	21, 38, 102, 188, 260
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	3 cut(s)	123, 361, 501
ApeKI	GCWGC	2 cut(s)	38, 188
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	2 cut(s)	192, 198
BalI	TGGCCA	1 cut(s)	503
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BbvI	GCAGC	2 cut(s)	25, 175
BccI	CCATC	2 cut(s)	125, 489
BcnI	CCSGG	1 cut(s)	366
BfaI	CTAG	2 cut(s)	84, 257
BfmI	CTRYAG	2 cut(s)	39, 65
BglI	GCCNNNNNGGC	1 cut(s)	311
BglII	AGATCT	1 cut(s)	53
BisI	GCNGC	3 cut(s)	39, 189, 306
BlsI	GCNGC	3 cut(s)	40, 190, 307
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	364, 420
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	366
BsaJI	CCNNGG	4 cut(s)	13, 126, 364, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	13, 126, 364, 414
BseGI	GGATG	3 cut(s)	136, 410, 500
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	362, 486
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	25, 175
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	125, 363, 503
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	3 cut(s)	125, 363, 503
Bsp143I	GATC	2 cut(s)	53, 462
BspACI	CCGC	2 cut(s)	109, 306
BspANI	GGCC	3 cut(s)	125, 363, 503
BspCNI	CTCAG	2 cut(s)	361, 485
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	364, 420
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	294
BssECI	CCNNGG	4 cut(s)	13, 126, 364, 414
BssMI	GATC	2 cut(s)	53, 462
BssT1I	CCWWGG	2 cut(s)	13, 414
Bst4CI	ACNGT	2 cut(s)	76, 157
BstC8I	GCNNGC	5 cut(s)	43, 113, 186, 281, 285
BstDEI	CTNAG	4 cut(s)	225, 327, 348, 472
BstF5I	GGATG	3 cut(s)	136, 410, 500
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	2 cut(s)	56, 465
BstMBI	GATC	2 cut(s)	53, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 108, 311
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	39, 65
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	25, 175
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	3 cut(s)	125, 363, 503
BtsCI	GGATG	3 cut(s)	136, 410, 500
BtsIMutI	CAGTG	2 cut(s)	256, 411
Cac8I	GCNNGC	5 cut(s)	43, 113, 186, 281, 285
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	362
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	1 cut(s)	466
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	4 cut(s)	225, 327, 348, 472
DpnI	GATC	2 cut(s)	55, 464
DpnII	GATC	2 cut(s)	53, 462
EaeI	YGGCCR	2 cut(s)	123, 501
Eco130I	CCWWGG	2 cut(s)	13, 414
Eco32I	GATATC	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	13, 414
ErhI	CCWWGG	2 cut(s)	13, 414
FaeI	CATG	1 cut(s)	469
FaiI	YATR	6 cut(s)	90, 122, 467, 488, 506, 508
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	1 cut(s)	465
Fnu4HI	GCNGC	3 cut(s)	39, 189, 306
FokI	GGATG	2 cut(s)	143, 397
Fsp4HI	GCNGC	3 cut(s)	39, 189, 306
FspBI	CTAG	2 cut(s)	84, 257
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	3 cut(s)	39, 189, 306
GsuI	CTGGAG	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	125, 363, 503
HapII	CCGG	1 cut(s)	366
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	175, 270, 369
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	192, 198
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	5 cut(s)	60, 235, 351, 457, 475
Hpy188III	TCNNGA	2 cut(s)	263, 466
Hpy8I	GTNNAC	1 cut(s)	254
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	3 cut(s)	207, 213, 228
HpyCH4III	ACNGT	2 cut(s)	76, 157
HpyCH4V	TGCA	5 cut(s)	4, 41, 92, 191, 245
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 108, 311
HpyF3I	CTNAG	4 cut(s)	225, 327, 348, 472
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	53, 462
LmnI	GCTCC	2 cut(s)	26, 265
LpnPI	CCDG	8 cut(s)	27, 93, 198, 265, 269, 276, 296, 379
Lsp1109I	GCAGC	2 cut(s)	25, 175
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	2 cut(s)	84, 257
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	55, 464
MbiI	CCGCTC	1 cut(s)	308
MboI	GATC	2 cut(s)	53, 462
MflI	RGATCY	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	503
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	480
MnlI	CCTC	7 cut(s)	121, 178, 219, 222, 432, 469, 481
Mox20I	TGGCCA	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	245
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	89, 108, 311
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	53, 462
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	2 cut(s)	364, 420
NmeAIII	GCCGAG	1 cut(s)	151
PagI	TCATGA	1 cut(s)	465
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	175, 270
PkrI	GCNGC	3 cut(s)	40, 190, 307
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	364, 420
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SatI	GCNGC	3 cut(s)	39, 189, 306
Sau3AI	GATC	2 cut(s)	53, 462
Sau96I	GGNCC	1 cut(s)	362
ScaI	AGTACT	1 cut(s)	73
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	366
SetI	ASST	9 cut(s)	23, 40, 66, 104, 190, 205, 211, 262, 473
SfaNI	GCATC	1 cut(s)	419
SfcI	CTRYAG	2 cut(s)	39, 65
SsiI	CCGC	2 cut(s)	109, 306
SspMI	CTAG	2 cut(s)	84, 257
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	13, 414
TaaI	ACNGT	2 cut(s)	76, 157
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	175, 270
TscAI	CASTG	2 cut(s)	256, 411
TseI	GCWGC	2 cut(s)	38, 188
TspDTI	ATGAA	1 cut(s)	370
TspRI	CASTG	2 cut(s)	256, 411
XspI	CTAG	2 cut(s)	84, 257
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.