Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

17814867 .. 17816098

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1200100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTGTATCAGCAACTTTCATGCATTCAACATTCCTACCTAATTCCTTGGCTTATGGAGCGGGAAAGAATAAATCAGTTAGAGTGAACCACCTTGTTGCACCAACTGTGCACAGCTACCCTCCAATAAGGATATGCTCAATGGCCAAGGATGGTCAGAAGAAACAACCATCTACAGTTACAAATGCATCAAAATATCCACCACCACCACCTCCTACACCTTCTCCCGGCAAGGCTAGGACAAAGTTTTCAGACTTGTTTGCATTCAGTGGGCCAGTGCCGGAGAGGATCAACGGCAGACTTGCAATGGTTGGGTTTGTTTCAGCTATAGCAACGGAACTATACAAGGGGCAGGATGTGTTCGCTCAGATATCCAATGGTGGAGTCTCATTGTTCCTTGGAACTAGTATTTTGCTAACAGTGGCATCATTGATTCCTCTATTTAAAGGACTCAGCGTGGAATCAGAATCGGATGGGATCATGACCCCAGATGCTGAGCTCATAAATGGAAGGTTGGCCATGTTGGGTCTCGTAGCCTTGGCCTTCACCGAGTATGTGAAGGGCGGAACCCTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

193

Amino Acids

20.24

Weight (kDa)

9.55

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	94 - 184	1.2e-08	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	62, 564
AclWI	GGATC	2 cut(s)	296, 485
AcoI	YGGCCR	2 cut(s)	144, 516
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	30
AhlI	ACTAGT	1 cut(s)	404
AluBI	AGCT	3 cut(s)	117, 326, 499
AluI	AGCT	3 cut(s)	117, 326, 499
Alw21I	GWGCWC	2 cut(s)	114, 501
Alw26I	GTCTC	2 cut(s)	391, 533
Alw44I	GTGCAC	1 cut(s)	110
AlwI	GGATC	2 cut(s)	296, 485
AlwNI	CAGNNNCTG	1 cut(s)	494
AoxI	GGCC	4 cut(s)	144, 272, 516, 540
ApaLI	GTGCAC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	538
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	2 cut(s)	146, 518
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	2 cut(s)	114, 501
BccI	CCATC	3 cut(s)	146, 178, 467
BceAI	ACGGC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	2 cut(s)	391, 533
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	3 cut(s)	237, 405, 572
BfmI	CTRYAG	2 cut(s)	174, 327
BlpI	GCTNAGC	1 cut(s)	495
Bme1390I	CCNGG	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	3 cut(s)	197, 434, 481
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	4 cut(s)	48, 147, 397, 537
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	4 cut(s)	48, 147, 397, 537
BseGI	GGATG	3 cut(s)	157, 361, 478
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	380, 466, 486
BseNI	ACTGG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	114
BshFI	GGCC	4 cut(s)	146, 274, 518, 542
BsiHKAI	GWGCWC	2 cut(s)	114, 501
BsiSI	CCGG	2 cut(s)	228, 281
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	391, 533
BsmI	GAATGC	2 cut(s)	25, 263
BsnI	GGCC	4 cut(s)	146, 274, 518, 542
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	114, 501
Bsp143I	GATC	2 cut(s)	288, 477
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	2 cut(s)	62, 564
BspANI	GGCC	4 cut(s)	146, 274, 518, 542
BspCNI	CTCAG	3 cut(s)	379, 465, 487
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	568
BspPI	GGATC	2 cut(s)	296, 485
BspTNI	GGTCTC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	48, 147, 397, 537
BssMI	GATC	2 cut(s)	288, 477
BssT1I	CCWWGG	4 cut(s)	48, 147, 397, 537
Bst4CI	ACNGT	3 cut(s)	109, 178, 421
BstDEI	CTNAG	3 cut(s)	366, 452, 495
BstF5I	GGATG	3 cut(s)	157, 361, 478
BstKTI	GATC	2 cut(s)	291, 480
BstMAI	GTCTC	2 cut(s)	391, 533
BstMBI	GATC	2 cut(s)	288, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 59
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	2 cut(s)	174, 327
BstSLI	GKGCMC	1 cut(s)	114
BsuRI	GGCC	4 cut(s)	146, 274, 518, 542
BtsCI	GGATG	3 cut(s)	157, 361, 478
BtsIMutI	CAGTG	3 cut(s)	274, 282, 426
CaiI	CAGNNNCTG	1 cut(s)	494
CciI	TCATGA	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	272
CviAII	CATG	3 cut(s)	22, 481, 520
DdeI	CTNAG	3 cut(s)	366, 452, 495
DpnI	GATC	2 cut(s)	290, 479
DpnII	GATC	2 cut(s)	288, 477
DraI	TTTAAA	1 cut(s)	445
EaeI	YGGCCR	2 cut(s)	144, 516
EciI	GGCGGA	1 cut(s)	579
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	4 cut(s)	48, 147, 397, 537
Eco24I	GRGCYC	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	372
Eco53kI	GAGCTC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	372
EcoT14I	CCWWGG	4 cut(s)	48, 147, 397, 537
EcoT22I	ATGCAT	2 cut(s)	27, 190
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	4 cut(s)	48, 147, 397, 537
FaeI	CATG	3 cut(s)	25, 484, 523
FaiI	YATR	9 cut(s)	23, 57, 136, 329, 343, 482, 503, 521, 555
FatI	CATG	3 cut(s)	21, 480, 519
FauI	CCCGC	1 cut(s)	55
FokI	GGATG	3 cut(s)	164, 368, 485
FriOI	GRGCYC	1 cut(s)	501
FspBI	CTAG	3 cut(s)	237, 405, 572
HaeIII	GGCC	4 cut(s)	146, 274, 518, 542
HapII	CCGG	2 cut(s)	228, 281
Hin1II	CATG	3 cut(s)	25, 484, 523
HinfI	GANTC	5 cut(s)	384, 433, 450, 461, 467
HpaII	CCGG	2 cut(s)	228, 281
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	2 cut(s)	88, 112
Hpy188I	TCNGA	5 cut(s)	159, 253, 369, 466, 472
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	2 cut(s)	88, 112
HpyAV	CCTTC	4 cut(s)	231, 504, 553, 553
HpyCH4III	ACNGT	3 cut(s)	109, 178, 421
HpyCH4V	TGCA	6 cut(s)	25, 101, 112, 188, 263, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 59
HpyF3I	CTNAG	3 cut(s)	366, 452, 495
Hsp92II	CATG	3 cut(s)	25, 484, 523
Kzo9I	GATC	2 cut(s)	288, 477
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	5 cut(s)	241, 288, 294, 338, 501
LweI	GCATC	3 cut(s)	197, 434, 481
MaeI	CTAG	3 cut(s)	237, 405, 572
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	290, 479
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	288, 477
MboII	GAAGA	1 cut(s)	172
MhlI	GDGCHC	2 cut(s)	114, 501
MlsI	TGGCCA	2 cut(s)	146, 518
MluCI	AATT	1 cut(s)	43
MluNI	TGGCCA	2 cut(s)	146, 518
MlyI	GAGTC	2 cut(s)	393, 444
MnlI	CCTC	4 cut(s)	132, 222, 279, 447
Mox20I	TGGCCA	2 cut(s)	146, 518
Mph1103I	ATGCAT	2 cut(s)	27, 190
MscI	TGGCCA	2 cut(s)	146, 518
MseI	TTAA	1 cut(s)	444
Msp20I	TGGCCA	2 cut(s)	146, 518
MspI	CCGG	2 cut(s)	228, 281
MspR9I	CCNGG	1 cut(s)	228
Mva1269I	GAATGC	2 cut(s)	25, 263
MwoI	GCNNNNNNNGC	2 cut(s)	11, 59
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	2 cut(s)	288, 477
NlaIII	CATG	3 cut(s)	25, 484, 523
NlaIV	GGNNCC	1 cut(s)	568
NsiI	ATGCAT	2 cut(s)	27, 190
PagI	TCATGA	1 cut(s)	480
PctI	GAATGC	2 cut(s)	25, 263
PfeI	GAWTC	3 cut(s)	433, 461, 467
PleI	GAGTC	2 cut(s)	392, 444
PpsI	GAGTC	2 cut(s)	392, 444
Psp124BI	GAGCTC	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	2 cut(s)	288, 477
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	393, 444
ScrFI	CCNGG	1 cut(s)	228
SduI	GDGCHC	2 cut(s)	114, 501
SetI	ASST	8 cut(s)	43, 96, 119, 214, 223, 328, 501, 515
SfaNI	GCATC	3 cut(s)	197, 434, 481
SfcI	CTRYAG	2 cut(s)	174, 327
SpeI	ACTAGT	1 cut(s)	404
Sse9I	AATT	1 cut(s)	43
SsiI	CCGC	2 cut(s)	62, 564
SspMI	CTAG	3 cut(s)	237, 405, 572
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	4 cut(s)	48, 147, 397, 537
TaaI	ACNGT	3 cut(s)	109, 178, 421
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	433, 461, 467
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	3 cut(s)	274, 282, 426
TspDTI	ATGAA	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	3 cut(s)	274, 282, 426
VneI	GTGCAC	1 cut(s)	110
XspI	CTAG	3 cut(s)	237, 405, 572
Zsp2I	ATGCAT	2 cut(s)	27, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.