Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008916.1

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

9055 .. 9796

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008916.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgcaatcaatattcctaacaaactccgtcgcttttggagctggaaagaagagctcagtcagagtaaaccaacttgtaccaactcttcacaggtaccctaacatgagggtgcgctccatggctgaggatggtctacctgaggagaaaccatctacagtttcagaaccatcaaagattccatcagcagcacctacacctacacctttcccaccaccccctagaactcccaaggttagcaccaagttcggggacgttttcgccttcagcggcccagcacctgaaagaatcaacggcagactcgcaatggtgggctttgtttcagctctggcagtggaagtgttaaagggccaggatgtgttttctcagatctccaacggtggagtctcgctgtttctcggcactagcattttgctatcagttgcatctgtgattcctctatttcaaggagtcagtgtggagtcaaaatcgaaggggcccctttggacctcagatgctgaattgttgaatggaagactggccatgctaggtttggtagctttggccttcactgagtatgtcaagggtggaacccttatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

192

Amino Acids

20.27

Weight (kDa)

9.69

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	247
AfaI	GTAC	2 cut(s)	78, 95
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	443, 505
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	4 cut(s)	41, 54, 323, 536
AluI	AGCT	4 cut(s)	41, 54, 323, 536
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	388
AlwNI	CAGNNNCTG	2 cut(s)	278, 494
AoxI	GGCC	5 cut(s)	268, 346, 473, 516, 540
ApaI	GGGCCC	1 cut(s)	477
ApeKI	GCWGC	1 cut(s)	185
Asp718I	GGTACC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	5 cut(s)	269, 346, 473, 474, 483
AvaII	GGWCC	1 cut(s)	483
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	477
BalI	TGGCCA	1 cut(s)	518
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	2 cut(s)	56, 477
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
BbsI	GAAGAC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	56
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	4 cut(s)	122, 157, 175, 187
BceAI	ACGGC	1 cut(s)	307
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	3 cut(s)	219, 402, 524
BfmI	CTRYAG	1 cut(s)	153
BglII	AGATCT	1 cut(s)	366
BisI	GCNGC	2 cut(s)	186, 268
BlsI	GCNGC	2 cut(s)	187, 269
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	483
BmgT120I	GGNCC	5 cut(s)	269, 346, 473, 474, 483
BmiI	GGNNCC	5 cut(s)	95, 474, 475, 476, 568
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	431, 481
BpiI	GAAGAC	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	117, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	519
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	2 cut(s)	117, 228
BseGI	GGATG	2 cut(s)	133, 358
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	6 cut(s)	69, 114, 129, 377, 501, 540
BseNI	ACTGG	1 cut(s)	519
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	271
BshFI	GGCC	5 cut(s)	270, 348, 475, 518, 542
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	263
BsnI	GGCC	5 cut(s)	270, 348, 475, 518, 542
Bsp120I	GGGCCC	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	56, 477
Bsp143I	GATC	1 cut(s)	366
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	267
BspANI	GGCC	5 cut(s)	270, 348, 475, 518, 542
BspCNI	CTCAG	6 cut(s)	68, 115, 130, 376, 500, 541
BspLI	GGNNCC	5 cut(s)	95, 474, 475, 476, 568
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	117, 228
BssMI	GATC	1 cut(s)	366
BssT1I	CCWWGG	2 cut(s)	117, 228
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	157, 377
Bst6I	CTCTTC	2 cut(s)	44, 90
BstDEI	CTNAG	6 cut(s)	55, 123, 138, 363, 487, 549
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	133, 358
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	517
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	5 cut(s)	270, 348, 475, 518, 542
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	133, 358
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	336, 457, 546
CaiI	CAGNNNCTG	2 cut(s)	278, 494
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	5 cut(s)	269, 346, 473, 474, 483
Csp6I	GTAC	2 cut(s)	77, 94
CviAII	CATG	3 cut(s)	103, 118, 520
CviQI	GTAC	2 cut(s)	77, 94
DdeI	CTNAG	6 cut(s)	55, 123, 138, 363, 487, 549
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	44, 90
EarI	CTCTTC	2 cut(s)	44, 90
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	117, 228
Eco24I	GRGCYC	2 cut(s)	56, 477
Eco47I	GGWCC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	247
Eco81I	CCTNAGG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	54
EcoO109I	RGGNCCY	2 cut(s)	473, 474
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	2 cut(s)	117, 228
EcoT38I	GRGCYC	2 cut(s)	56, 477
ErhI	CCWWGG	2 cut(s)	117, 228
FaeI	CATG	3 cut(s)	106, 121, 523
FaiI	YATR	4 cut(s)	104, 119, 521, 555
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	3 cut(s)	102, 117, 519
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	186, 268
FokI	GGATG	2 cut(s)	140, 365
FriOI	GRGCYC	2 cut(s)	56, 477
Fsp4HI	GCNGC	2 cut(s)	186, 268
FspBI	CTAG	3 cut(s)	219, 402, 524
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	2 cut(s)	186, 268
GsaI	CCCAGC	1 cut(s)	275
HaeIII	GGCC	5 cut(s)	270, 348, 475, 518, 542
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	106, 121, 523
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	7 cut(s)	175, 285, 297, 381, 430, 447, 458
Hpy166II	GTNNAC	2 cut(s)	67, 134
Hpy188I	TCNGA	4 cut(s)	62, 163, 366, 490
Hpy8I	GTNNAC	2 cut(s)	67, 134
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	3 cut(s)	271, 463, 553
HpyCH4III	ACNGT	2 cut(s)	157, 377
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	4, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	6 cut(s)	55, 123, 138, 363, 487, 549
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	106, 121, 523
HspAI	GCGC	1 cut(s)	112
KpnI	GGTACC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	366
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	2 cut(s)	38, 119
LpnPI	CCDG	9 cut(s)	27, 76, 150, 285, 291, 311, 335, 362, 500
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	2 cut(s)	431, 481
MaeI	CTAG	3 cut(s)	219, 402, 524
MaeII	ACGT	1 cut(s)	252
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	3 cut(s)	61, 77, 522
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	2 cut(s)	56, 477
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	1 cut(s)	497
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	4 cut(s)	291, 390, 456, 467
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	5 cut(s)	99, 118, 133, 444, 496
Mox20I	TGGCCA	1 cut(s)	518
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	2 cut(s)	341, 577
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	3 cut(s)	106, 121, 523
NlaIV	GGNNCC	5 cut(s)	95, 474, 475, 476, 568
NmeAIII	GCCGAG	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	175, 285, 430
PkrI	GCNGC	2 cut(s)	187, 269
PleI	GAGTC	4 cut(s)	291, 389, 455, 466
PpsI	GAGTC	4 cut(s)	291, 389, 455, 466
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	5 cut(s)	95, 474, 475, 476, 568
PspOMI	GGGCCC	1 cut(s)	473
PspPI	GGNCC	5 cut(s)	269, 346, 473, 474, 483
PstNI	CAGNNNCTG	2 cut(s)	278, 494
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	2 cut(s)	78, 95
RsaNI	GTAC	2 cut(s)	77, 94
RseI	CAYNNNNRTG	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	2 cut(s)	341, 577
SatI	GCNGC	2 cut(s)	186, 268
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	5 cut(s)	269, 346, 473, 474, 483
SchI	GAGTC	4 cut(s)	291, 390, 456, 467
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	56, 477
SfaNI	GCATC	2 cut(s)	431, 481
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	483
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	497
SsiI	CCGC	1 cut(s)	267
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	3 cut(s)	219, 402, 524
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	117, 228
TaaI	ACNGT	2 cut(s)	157, 377
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	467
TasI	AATT	1 cut(s)	497
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	175, 285, 430
Tru1I	TTAA	2 cut(s)	341, 577
Tru9I	TTAA	2 cut(s)	341, 577
TscAI	CASTG	3 cut(s)	336, 457, 553
TseI	GCWGC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	3 cut(s)	336, 457, 553
VpaK11BI	GGWCC	1 cut(s)	483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	3 cut(s)	219, 402, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.