Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

17842766 .. 17843775

Gene Structure 1010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1200600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGCATCAGCTTCCATGCAATCACTTCTAGCTAACTCAGTGGTTTATGGAGCTGGAAAGAGCAGATCAGCGAGAGTAATCCACCTTGTTCCTGCTAATAGGTACCGCCACATGGTCGTACGCTCCATGGCCGAGAATGGTCAGGAGGAGCAACCGTCTTCTACAACACCAGAGGCATCCAAAATCCCCCCACCACCTCCTACACCTACTCCTTCTCCTCCTCGTCCCAAGAAGGTTAGCACTAAGTTTTCAGATGTGTTTGCATTCAGTGGGCCAGCTCCGGAGAGAATCAACGGCAGACTTGCAATGGTAGGGTTTGTTTCAGCTCTGGCTGTGGAACTGTCCAAGGGCCAGGATGTGTTTACTCAGATCTCCGATGGTGGAGTTTCGTTGTTCCTTGCCACTAGTGTTTTGCTCTCAGTCGCATCCGTGATTCCTCTTTTCAAAGGAGTCAGCGTGGAGTCGAAATCAAACGGGCTCATGACGTCTGATGCCGAGCTCTGGAATGGAAGGTTGGCTATGTTAGGTTTGGTTGCTTTGGCCTTCACCGAGTATGTGAAGGGAGGGACTCTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

194

Amino Acids

20.27

Weight (kDa)

9.69

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	94 - 185	3.1e-09	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	491
Acc65I	GGTACC	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	2 cut(s)	107, 123
AfiI	CCNNNNNNNGG	2 cut(s)	115, 504
AgsI	TTSAA	1 cut(s)	448
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	500, 532
AluBI	AGCT	6 cut(s)	14, 35, 56, 281, 329, 502
AluI	AGCT	6 cut(s)	14, 35, 56, 281, 329, 502
Alw21I	GWGCWC	1 cut(s)	504
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	4 cut(s)	132, 275, 352, 543
ApeKI	GCWGC	1 cut(s)	5
Asp718I	GGTACC	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	275, 352
AsuHPI	GGTGA	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	105
BanII	GRGCYC	2 cut(s)	483, 504
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	504
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	356
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	2 cut(s)	32, 408
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	275, 352
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	4 cut(s)	17, 188, 437, 484
BpiI	GAAGAC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	129, 348
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	8 cut(s)	143, 173, 196, 202, 226, 232, 444, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 504
Bse3DI	GCAATG	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	2 cut(s)	129, 348
BseGI	GGATG	3 cut(s)	179, 364, 428
BseLI	CCNNNNNNNGG	2 cut(s)	115, 504
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	54, 383, 435
BseRI	GAGGAG	3 cut(s)	164, 210, 213
BshFI	GGCC	4 cut(s)	134, 277, 354, 545
BshNI	GGYRCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	284
BsiWI	CGTACG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	115, 504
BsmFI	GGGAC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	4 cut(s)	134, 277, 354, 545
Bsp1286I	GDGCHC	2 cut(s)	483, 504
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	68, 372
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	4 cut(s)	134, 277, 354, 545
BspCNI	CTCAG	3 cut(s)	53, 382, 434
BspEI	TCCGGA	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	129, 348
BssMI	GATC	2 cut(s)	68, 372
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	2 cut(s)	129, 348
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	159, 345
BstACI	GRCGYC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	4 cut(s)	40, 246, 369, 421
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	179, 364, 428
BstKTI	GATC	2 cut(s)	71, 375
BstMBI	GATC	2 cut(s)	68, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	134, 277, 354, 545
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	179, 364, 428
BtsIMutI	CAGTG	2 cut(s)	48, 277
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	275, 352
Csp6I	GTAC	2 cut(s)	106, 122
CviAII	CATG	4 cut(s)	19, 115, 130, 484
CviQI	GTAC	2 cut(s)	106, 122
DdeI	CTNAG	4 cut(s)	40, 246, 369, 421
DpnI	GATC	2 cut(s)	70, 374
DpnII	GATC	2 cut(s)	68, 372
EaeI	YGGCCR	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	2 cut(s)	129, 348
Eco24I	GRGCYC	2 cut(s)	483, 504
Eco53kI	GAGCTC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	129, 348
EcoT38I	GRGCYC	2 cut(s)	483, 504
ErhI	CCWWGG	2 cut(s)	129, 348
FaeI	CATG	4 cut(s)	22, 118, 133, 487
FaiI	YATR	7 cut(s)	20, 51, 116, 131, 485, 524, 558
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	4 cut(s)	18, 114, 129, 483
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	166, 371, 415
FriOI	GRGCYC	2 cut(s)	483, 504
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	32, 408
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	4 cut(s)	134, 277, 354, 545
HapII	CCGG	1 cut(s)	284
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	4 cut(s)	22, 118, 133, 487
HinfI	GANTC	5 cut(s)	291, 436, 453, 464, 571
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	4 cut(s)	256, 372, 379, 493
Hpy188III	TCNNGA	4 cut(s)	146, 284, 484, 505
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	5 cut(s)	225, 229, 507, 556, 556
HpyCH4III	ACNGT	2 cut(s)	159, 345
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	4 cut(s)	8, 22, 266, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	40, 246, 369, 421
HpySE526I	ACGT	1 cut(s)	488
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	4 cut(s)	22, 118, 133, 487
Kpn2I	TCCGGA	1 cut(s)	283
KpnI	GGTACC	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	68, 372
LmnI	GCTCC	4 cut(s)	53, 131, 151, 286
LweI	GCATC	4 cut(s)	17, 188, 437, 484
MaeI	CTAG	2 cut(s)	32, 408
MaeII	ACGT	1 cut(s)	488
MalI	GATC	2 cut(s)	70, 374
MboI	GATC	2 cut(s)	68, 372
MboII	GAAGA	1 cut(s)	153
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	483, 504
MlyI	GAGTC	3 cut(s)	462, 473, 565
MnlI	CCTC	7 cut(s)	142, 169, 210, 231, 234, 450, 560
MroI	TCCGGA	1 cut(s)	283
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	68, 372
NlaIII	CATG	4 cut(s)	22, 118, 133, 487
NlaIV	GGNNCC	1 cut(s)	107
NmeAIII	GCCGAG	2 cut(s)	160, 523
PagI	TCATGA	1 cut(s)	483
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	291, 436
Pfl23II	CGTACG	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	3 cut(s)	461, 472, 565
PpsI	GAGTC	3 cut(s)	461, 472, 565
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspLI	CGTACG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	275, 352
PsuI	RGATCY	1 cut(s)	372
RsaI	GTAC	2 cut(s)	107, 123
RsaNI	GTAC	2 cut(s)	106, 122
SacI	GAGCTC	1 cut(s)	504
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	68, 372
Sau96I	GGNCC	2 cut(s)	275, 352
SchI	GAGTC	3 cut(s)	462, 473, 565
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	2 cut(s)	483, 504
SfaNI	GCATC	4 cut(s)	17, 188, 437, 484
SpeI	ACTAGT	1 cut(s)	407
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	2 cut(s)	32, 408
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	2 cut(s)	129, 348
TaaI	ACNGT	2 cut(s)	159, 345
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	1 cut(s)	467
TfiI	GAWTC	2 cut(s)	291, 436
TscAI	CASTG	2 cut(s)	48, 277
TseI	GCWGC	1 cut(s)	5
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	2 cut(s)	48, 277
XspI	CTAG	2 cut(s)	32, 408
ZraI	GACGTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.