Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

21235077 .. 21236062

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTGCAACATCCACTATGCAATCAATCCTTGGAAGCTCTGTCGCTTATGGAAGAGTTGCGGGCAAGAACAGATCTCTGAACCTGCAGAGTACTGTTCCTACTAGTTATGCAGTTTCAAGCAATCTCAGGGTTCGCTCTATGGCAGAGGATGGTCAAAAGAAGCAACCAACAGCTGTAACAAAAGCCTCAAAGAATCCACAGCCTGCAGCCCCTTCACCATCTCCTCCTCCTCCTCCTTCTCCGAAGTTTTCAGACGTGTTTGCATTCAGCGGGCCGGCACCTGAGAGAATCAACGGCAGGTTGGCAATGGTGGGCTTCGTTGCGGCTCTAGCTGTCGAACTCTCCAAGGGGCAAGATGTGTTTGCTCAGATATCCAACGGCCCCGGAGTACCATTGTTCATCGGCACAAGTATTTTGCTATCAGTAGCATCCTTGGTTCCTCTATTGAAAGGAGTGACCGTGGAGTCCAAATCCGACGGGATCTTTACCTCGGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTGGCTCTGGCCTTCACCGAGTACGTGACCGGCAGTGCCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

194

Amino Acids

20.02

Weight (kDa)

9.69

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	94 - 186	7.7e-10	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
Acc36I	ACCTGC	2 cut(s)	93, 291
AccB1I	GGYRCC	1 cut(s)	280
AciI	CCGC	3 cut(s)	62, 273, 326
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	522
AfaI	GTAC	3 cut(s)	94, 393, 560
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	120, 451
AhlI	ACTAGT	1 cut(s)	104
AjiI	CACGTC	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	4 cut(s)	39, 176, 335, 505
AluI	AGCT	4 cut(s)	39, 176, 335, 505
Alw21I	GWGCWC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	4 cut(s)	275, 382, 522, 546
ApeKI	GCWGC	2 cut(s)	5, 209
AspS9I	GGNCC	2 cut(s)	275, 383
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	210, 544
BaeGI	GKGCMC	1 cut(s)	577
BalI	TGGCCA	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	2 cut(s)	146, 229
BceAI	ACGGC	2 cut(s)	313, 397
BcnI	CCSGG	1 cut(s)	387
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	3 cut(s)	105, 332, 578
BfmI	CTRYAG	2 cut(s)	86, 207
BfuAI	ACCTGC	2 cut(s)	93, 291
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	3 cut(s)	6, 210, 327
BlsI	GCNGC	3 cut(s)	7, 211, 328
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	387
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	275, 383
BmiI	GGNNCC	3 cut(s)	282, 385, 441
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	2 cut(s)	440, 487
BpuMI	CCSGG	1 cut(s)	387
BsaAI	YACGTR	1 cut(s)	562
BsaJI	CCNNGG	6 cut(s)	31, 348, 385, 435, 462, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bse118I	RCCGGY	2 cut(s)	277, 566
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	6 cut(s)	31, 348, 385, 435, 462, 492
BseGI	GGATG	4 cut(s)	11, 157, 431, 502
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	142, 276, 383
BseRI	GAGGAG	4 cut(s)	216, 219, 222, 225
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	1 cut(s)	221
BshFI	GGCC	4 cut(s)	277, 384, 524, 548
BshNI	GGYRCC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	3 cut(s)	278, 387, 567
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	4 cut(s)	277, 384, 524, 548
Bsp1286I	GDGCHC	2 cut(s)	507, 577
Bsp143I	GATC	2 cut(s)	74, 483
BspACI	CCGC	3 cut(s)	62, 273, 326
BspANI	GGCC	4 cut(s)	277, 384, 524, 548
BspCNI	CTCAG	3 cut(s)	141, 277, 382
BspLI	GGNNCC	3 cut(s)	282, 385, 441
BspMAI	CTGCAG	2 cut(s)	90, 211
BspMI	ACCTGC	2 cut(s)	93, 291
BspPI	GGATC	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	2 cut(s)	277, 566
BssAI	RCCGGY	2 cut(s)	277, 566
BssECI	CCNNGG	6 cut(s)	31, 348, 385, 435, 462, 492
BssMI	GATC	2 cut(s)	74, 483
BssT1I	CCWWGG	3 cut(s)	31, 348, 435
Bst4CI	ACNGT	2 cut(s)	97, 463
Bst6I	CTCTTC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	562
BstC8I	GCNNGC	4 cut(s)	64, 207, 275, 279
BstDEI	CTNAG	3 cut(s)	128, 285, 369
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	4 cut(s)	11, 157, 431, 502
BstKTI	GATC	2 cut(s)	77, 486
BstMBI	GATC	2 cut(s)	74, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	2 cut(s)	86, 207
BstSLI	GKGCMC	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	2 cut(s)	74, 483
BstYI	RGATCY	2 cut(s)	74, 483
BsuRI	GGCC	4 cut(s)	277, 384, 524, 548
BtgI	CCRYGG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	4 cut(s)	11, 157, 431, 502
BtsI	GCAGTG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	577
BveI	ACCTGC	2 cut(s)	93, 291
Cac8I	GCNNGC	4 cut(s)	64, 207, 275, 279
Cfr10I	RCCGGY	2 cut(s)	277, 566
Cfr13I	GGNCC	2 cut(s)	275, 383
Csp6I	GTAC	3 cut(s)	93, 392, 559
CviAII	CATG	1 cut(s)	526
CviQI	GTAC	3 cut(s)	93, 392, 559
DdeI	CTNAG	3 cut(s)	128, 285, 369
DpnI	GATC	2 cut(s)	76, 485
DpnII	GATC	2 cut(s)	74, 483
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	505
Eco130I	CCWWGG	3 cut(s)	31, 348, 435
Eco24I	GRGCYC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	505
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	3 cut(s)	31, 348, 435
EcoT38I	GRGCYC	1 cut(s)	507
ErhI	CCWWGG	3 cut(s)	31, 348, 435
FaeI	CATG	1 cut(s)	529
FaiI	YATR	5 cut(s)	20, 51, 111, 143, 527
FatI	CATG	1 cut(s)	525
FauI	CCCGC	2 cut(s)	55, 266
Fnu4HI	GCNGC	3 cut(s)	6, 210, 327
FokI	GGATG	3 cut(s)	164, 418, 509
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	3 cut(s)	6, 210, 327
FspBI	CTAG	3 cut(s)	105, 332, 578
GluI	GCNGC	3 cut(s)	6, 210, 327
HaeIII	GGCC	4 cut(s)	277, 384, 524, 548
HapII	CCGG	3 cut(s)	278, 387, 567
Hin1II	CATG	1 cut(s)	529
HinfI	GANTC	3 cut(s)	196, 291, 467
HpaII	CCGG	3 cut(s)	278, 387, 567
HphI	GGTGA	2 cut(s)	210, 544
Hpy188I	TCNGA	6 cut(s)	81, 246, 256, 372, 478, 496
Hpy188III	TCNNGA	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	4 cut(s)	225, 249, 510, 559
HpyCH4III	ACNGT	2 cut(s)	97, 463
HpyCH4IV	ACGT	2 cut(s)	258, 561
HpyCH4V	TGCA	7 cut(s)	8, 22, 88, 113, 209, 266, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	128, 285, 369
HpySE526I	ACGT	2 cut(s)	258, 561
Hsp92II	CATG	1 cut(s)	529
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	74, 483
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	2 cut(s)	440, 487
MaeI	CTAG	3 cut(s)	105, 332, 578
MaeII	ACGT	2 cut(s)	258, 561
MaeIII	GTNAC	3 cut(s)	178, 457, 562
MalI	GATC	2 cut(s)	76, 485
MboI	GATC	2 cut(s)	74, 483
MboII	GAAGA	1 cut(s)	66
MflI	RGATCY	2 cut(s)	74, 483
MhlI	GDGCHC	2 cut(s)	507, 577
MlsI	TGGCCA	1 cut(s)	524
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	2 cut(s)	402, 501
MnlI	CCTC	8 cut(s)	142, 199, 237, 240, 243, 246, 453, 502
Mox20I	TGGCCA	1 cut(s)	524
MroNI	GCCGGC	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	524
MspA1I	CMGCKG	2 cut(s)	176, 273
MspI	CCGG	3 cut(s)	278, 387, 567
MspR9I	CCNGG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	332
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	74, 483
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	3 cut(s)	282, 385, 441
NmuCI	GTSAC	2 cut(s)	457, 562
PctI	GAATGC	1 cut(s)	266
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	196, 291
PkrI	GCNGC	3 cut(s)	7, 211, 328
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Ppu21I	YACGTR	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	507
PspN4I	GGNNCC	3 cut(s)	282, 385, 441
PspPI	GGNCC	2 cut(s)	275, 383
PstI	CTGCAG	2 cut(s)	90, 211
PsuI	RGATCY	2 cut(s)	74, 483
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	3 cut(s)	94, 393, 560
RsaNI	GTAC	3 cut(s)	93, 392, 559
SacI	GAGCTC	1 cut(s)	507
SatI	GCNGC	3 cut(s)	6, 210, 327
Sau3AI	GATC	2 cut(s)	74, 483
Sau96I	GGNCC	2 cut(s)	275, 383
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	2 cut(s)	507, 577
SfaNI	GCATC	2 cut(s)	440, 487
SfcI	CTRYAG	2 cut(s)	86, 207
SpeI	ACTAGT	1 cut(s)	104
SsiI	CCGC	3 cut(s)	62, 273, 326
SspMI	CTAG	3 cut(s)	105, 332, 578
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	3 cut(s)	31, 348, 435
TaaI	ACNGT	2 cut(s)	97, 463
TaiI	ACGT	2 cut(s)	261, 564
TaqI	TCGA	1 cut(s)	339
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	196, 291
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	2 cut(s)	457, 562
TseI	GCWGC	2 cut(s)	5, 209
Tsp45I	GTSAC	2 cut(s)	457, 562
TspDTI	ATGAA	1 cut(s)	391
TspRI	CASTG	1 cut(s)	577
XspI	CTAG	3 cut(s)	105, 332, 578
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.