Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

17135328 .. 17136101

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCTGCAACATCTGCTATGCAATCGATCCTCGGAAGTTCAATCGCTTATGGAGCTGCTGGCAATAAGAATAGATCTGTGAACCTGCAGTTTACTGTTCCTGCTAGTTCTGCAGTTCAAAGCTATCTTAGGGTTCGCTCGATGACCGAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAAAAGCCTCAAAGAATCCACCACCAGCTGCAGCTCCTTCTCCTTCACCTTCACCTCCTCCTCCTTCTCCCAAGCTTTCAGACGTATTGGCTTTCAGTGGACCGGCACCAGAGAGAATTAACGGGAGGCTTGCAATGGTGGGCTTCGTTGCTGCTCTAGTAGTCGAACTATCCAAGGGGCAAGATGTGTTTGCTCAGATATCCAACGGCCCCGGAGTACCATTGTTCATCGGCACAAGTGTTTTGCTATCAGTGGCGTCCTTGGTTCCTCTATTGAAAGGAGTGAGCGTGGAGTCCAAATCCGACGGGATCATGACCTCAGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGTCTTCACCGAGTACGTTACCGGCAGTACCTTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

197

Amino Acids

20.12

Weight (kDa)

9.52

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	286
AclWI	GGATC	2 cut(s)	22, 497
AcoI	YGGCCR	1 cut(s)	528
AcyI	GRCGYC	1 cut(s)	437
AfaI	GTAC	3 cut(s)	399, 566, 580
AgsI	TTSAA	3 cut(s)	42, 119, 457
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	7 cut(s)	56, 123, 209, 215, 256, 511, 548
AluI	AGCT	7 cut(s)	56, 123, 209, 215, 256, 511, 548
Alw21I	GWGCWC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	22, 497
AoxI	GGCC	2 cut(s)	388, 528
ApeKI	GCWGC	5 cut(s)	5, 56, 209, 212, 332
AspS9I	GGNCC	2 cut(s)	281, 389
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	219, 225, 550
AvaII	GGWCC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	43, 196, 224, 319
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	393
BfaI	CTAG	3 cut(s)	105, 338, 589
BfmI	CTRYAG	3 cut(s)	86, 111, 210
BfuAI	ACCTGC	1 cut(s)	93
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	5 cut(s)	6, 57, 210, 213, 333
BlsI	GCNGC	5 cut(s)	7, 58, 211, 214, 334
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	281, 389
BmiI	GGNNCC	3 cut(s)	288, 391, 447
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	547
BpuMI	CCSGG	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	437
BsaJI	CCNNGG	5 cut(s)	31, 147, 354, 391, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bse118I	RCCGGY	2 cut(s)	283, 572
Bse3DI	GCAATG	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	5 cut(s)	31, 147, 354, 391, 441
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	389, 513
BseRI	GAGGAG	2 cut(s)	228, 231
BseXI	GCAGC	4 cut(s)	43, 196, 224, 319
BshFI	GGCC	2 cut(s)	390, 530
BshNI	GGYRCC	1 cut(s)	286
BshVI	ATCGAT	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	513
BsiSI	CCGG	3 cut(s)	284, 393, 573
BsnI	GGCC	2 cut(s)	390, 530
Bsp1286I	GDGCHC	1 cut(s)	513
Bsp143I	GATC	3 cut(s)	27, 74, 489
BspANI	GGCC	2 cut(s)	390, 530
BspCNI	CTCAG	2 cut(s)	388, 512
BspDI	ATCGAT	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	288, 391, 447
BspMAI	CTGCAG	3 cut(s)	90, 115, 214
BspMI	ACCTGC	1 cut(s)	93
BspPI	GGATC	2 cut(s)	22, 497
BspT107I	GGYRCC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	2 cut(s)	283, 572
BssAI	RCCGGY	2 cut(s)	283, 572
BssECI	CCNNGG	5 cut(s)	31, 147, 354, 391, 441
BssMI	GATC	3 cut(s)	27, 74, 489
BssNI	GRCGYC	1 cut(s)	437
BssT1I	CCWWGG	2 cut(s)	354, 441
Bst4CI	ACNGT	2 cut(s)	97, 178
BstACI	GRCGYC	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	61, 312
BstDEI	CTNAG	4 cut(s)	128, 375, 499, 583
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	3 cut(s)	30, 77, 492
BstMBI	GATC	3 cut(s)	27, 74, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 53, 110
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	3 cut(s)	86, 111, 210
BstV1I	GCAGC	4 cut(s)	43, 196, 224, 319
BstV2I	GAAGAC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	390, 530
BsuTUI	ATCGAT	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	283, 438
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	61, 312
CciI	TCATGA	1 cut(s)	492
Cfr10I	RCCGGY	2 cut(s)	283, 572
Cfr13I	GGNCC	2 cut(s)	281, 389
ClaI	ATCGAT	1 cut(s)	26
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	3 cut(s)	398, 565, 579
CviAII	CATG	2 cut(s)	493, 532
CviQI	GTAC	3 cut(s)	398, 565, 579
DdeI	CTNAG	4 cut(s)	128, 375, 499, 583
DpnI	GATC	3 cut(s)	29, 76, 491
DpnII	GATC	3 cut(s)	27, 74, 489
EaeI	YGGCCR	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	2 cut(s)	354, 441
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	2 cut(s)	354, 441
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	2 cut(s)	354, 441
FaeI	CATG	2 cut(s)	496, 535
FaiI	YATR	4 cut(s)	20, 51, 494, 533
FatI	CATG	2 cut(s)	492, 531
Fnu4HI	GCNGC	5 cut(s)	6, 57, 210, 213, 333
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	5 cut(s)	6, 57, 210, 213, 333
FspBI	CTAG	3 cut(s)	105, 338, 589
GluI	GCNGC	5 cut(s)	6, 57, 210, 213, 333
HaeIII	GGCC	2 cut(s)	390, 530
HapII	CCGG	3 cut(s)	284, 393, 573
HgaI	GACGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	496, 535
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	196, 473
HpaII	CCGG	3 cut(s)	284, 393, 573
HphI	GGTGA	3 cut(s)	219, 225, 550
Hpy166II	GTNNAC	3 cut(s)	82, 93, 281
Hpy188I	TCNGA	5 cut(s)	35, 262, 378, 484, 502
Hpy188III	TCNNGA	2 cut(s)	493, 514
Hpy8I	GTNNAC	3 cut(s)	82, 93, 281
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	5 cut(s)	228, 234, 240, 255, 516
HpyCH4III	ACNGT	2 cut(s)	97, 178
HpyCH4IV	ACGT	2 cut(s)	264, 567
HpyCH4V	TGCA	7 cut(s)	8, 22, 88, 113, 212, 314, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 53, 110
HpyF3I	CTNAG	4 cut(s)	128, 375, 499, 583
HpySE526I	ACGT	2 cut(s)	264, 567
Hsp92I	GRCGYC	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	496, 535
Kzo9I	GATC	3 cut(s)	27, 74, 489
LmnI	GCTCC	2 cut(s)	53, 220
LpnPI	CCDG	9 cut(s)	45, 98, 114, 219, 297, 303, 406, 499, 586
Lsp1109I	GCAGC	4 cut(s)	43, 196, 224, 319
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	3 cut(s)	105, 338, 589
MaeII	ACGT	2 cut(s)	264, 567
MaeIII	GTNAC	2 cut(s)	178, 568
MalI	GATC	3 cut(s)	29, 76, 491
MboI	GATC	3 cut(s)	27, 74, 489
MboII	GAAGA	1 cut(s)	547
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	1 cut(s)	297
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	408, 507
MnlI	CCTC	9 cut(s)	41, 142, 199, 246, 249, 252, 300, 459, 508
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	3 cut(s)	284, 393, 573
MspR9I	CCNGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	14, 53, 110
NciI	CCSGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	27, 74, 489
NlaIII	CATG	2 cut(s)	496, 535
NlaIV	GGNNCC	3 cut(s)	288, 391, 447
PagI	TCATGA	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	7, 58, 211, 214, 334
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	513
PspN4I	GGNNCC	3 cut(s)	288, 391, 447
PspPI	GGNCC	2 cut(s)	281, 389
PstI	CTGCAG	3 cut(s)	90, 115, 214
PsuI	RGATCY	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	3 cut(s)	399, 566, 580
RsaNI	GTAC	3 cut(s)	398, 565, 579
SacI	GAGCTC	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	5 cut(s)	6, 57, 210, 213, 333
Sau3AI	GATC	3 cut(s)	27, 74, 489
Sau96I	GGNCC	2 cut(s)	281, 389
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	513
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	3 cut(s)	86, 111, 210
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	1 cut(s)	297
SspMI	CTAG	3 cut(s)	105, 338, 589
SstI	GAGCTC	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	2 cut(s)	354, 441
TaaI	ACNGT	2 cut(s)	97, 178
TaiI	ACGT	2 cut(s)	267, 570
TaqI	TCGA	3 cut(s)	26, 140, 345
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	283, 438
TseI	GCWGC	5 cut(s)	5, 56, 209, 212, 332
TspDTI	ATGAA	1 cut(s)	397
TspRI	CASTG	2 cut(s)	283, 438
VpaK11BI	GGWCC	1 cut(s)	281
XspI	CTAG	3 cut(s)	105, 338, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.