Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

8514131 .. 8514481

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCAGGTCAGCACAAAGTTTTCAGACGGGTTTACATTTAGTGGACCGGCGCCGGAGAGAATGAACGGCAGGCTAGCAATGGTGAGCTTTGTGGCGGCTCTAGCAGTCGAACTATCCAAGGGCCAAGATGTGTTTGCTCAGTTATCCAACGGCGGAATCCCATTGTTCCTTGGCACCAGTATTTTGCTATCAGTGGCATCTTTGATTCCATTGTTGAAGGGTGTGACTGTAGAGTCCAAATCAAAAGGGTTGATGACCTCAGATGCTGAGGTATGGAATGGAAGATTGGCCATGTTGGGGCTGGTAGCTCTGGCCTTCACCGAGTATGTGACAGGAGGGACCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

116

Amino Acids

12.1

Weight (kDa)

6.15

Isoelectric Point (pI)

12.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	17 - 108	7.1e-09	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	232
AccB1I	GGYRCC	2 cut(s)	49, 173
AciI	CCGC	2 cut(s)	95, 153
AcoI	YGGCCR	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	297
AgsI	TTSAA	1 cut(s)	217
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	2 cut(s)	87, 308
AluI	AGCT	2 cut(s)	87, 308
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	121, 288, 312
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	3 cut(s)	44, 121, 339
AsuHPI	GGTGA	2 cut(s)	94, 310
AsuNHI	GCTAGC	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	44, 339
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	2 cut(s)	49, 173
BbvCI	CCTCAGC	1 cut(s)	267
BceAI	ACGGC	2 cut(s)	82, 166
BfaI	CTAG	3 cut(s)	74, 101, 344
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme18I	GGWCC	2 cut(s)	44, 339
BmgT120I	GGNCC	3 cut(s)	44, 121, 339
BmiI	GGNNCC	4 cut(s)	51, 175, 340, 341
BmsI	GCATC	2 cut(s)	206, 253
BmtI	GCTAGC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	117, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	117, 169
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	152, 258, 273
BseNI	ACTGG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	123, 290, 314
BshNI	GGYRCC	2 cut(s)	49, 173
BsiSI	CCGG	2 cut(s)	47, 53
BslI	CCNNNNNNNGG	1 cut(s)	297
BsnI	GGCC	3 cut(s)	123, 290, 314
BspACI	CCGC	2 cut(s)	95, 153
BspANI	GGCC	3 cut(s)	123, 290, 314
BspCNI	CTCAG	3 cut(s)	151, 259, 272
BspLI	GGNNCC	4 cut(s)	51, 175, 340, 341
BspOI	GCTAGC	1 cut(s)	77
BspT107I	GGYRCC	2 cut(s)	49, 173
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	117, 169
BssNI	GRCGYC	1 cut(s)	50
BssT1I	CCWWGG	2 cut(s)	117, 169
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	71, 75
BstDEI	CTNAG	3 cut(s)	138, 259, 267
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	123, 290, 314
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	71, 75
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	46
Cfr13I	GGNCC	3 cut(s)	44, 121, 339
CviAII	CATG	1 cut(s)	292
CviJI	RGCY	8 cut(s)	73, 87, 98, 123, 290, 301, 308, 314
CviKI_1	RGCY	8 cut(s)	73, 87, 98, 123, 290, 301, 308, 314
DdeI	CTNAG	3 cut(s)	138, 259, 267
DinI	GGCGCC	1 cut(s)	51
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	117, 169
Eco47I	GGWCC	2 cut(s)	44, 339
EcoO109I	RGGNCCY	1 cut(s)	339
EcoT14I	CCWWGG	2 cut(s)	117, 169
EgeI	GGCGCC	1 cut(s)	51
EheI	GGCGCC	1 cut(s)	51
ErhI	CCWWGG	2 cut(s)	117, 169
FaeI	CATG	1 cut(s)	295
FaiI	YATR	3 cut(s)	274, 293, 327
FatI	CATG	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	3 cut(s)	74, 101, 344
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	123, 290, 314
HapII	CCGG	2 cut(s)	47, 53
HhaI	GCGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	3 cut(s)	156, 205, 233
HpaII	CCGG	2 cut(s)	47, 53
HphI	GGTGA	2 cut(s)	94, 310
Hpy166II	GTNNAC	2 cut(s)	33, 44
Hpy188I	TCNGA	2 cut(s)	25, 262
Hpy8I	GTNNAC	2 cut(s)	33, 44
HpyAV	CCTTC	2 cut(s)	211, 325
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	3 cut(s)	138, 259, 267
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	295
HspAI	GCGC	1 cut(s)	50
KasI	GGCGCC	1 cut(s)	49
KflI	GGGWCCC	1 cut(s)	339
LpnPI	CCDG	7 cut(s)	55, 60, 66, 190, 287, 296, 318
LweI	GCATC	2 cut(s)	206, 253
MaeI	CTAG	3 cut(s)	74, 101, 344
MaeIII	GTNAC	2 cut(s)	223, 328
MboII	GAAGA	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	262, 268, 329
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	2 cut(s)	47, 53
MwoI	GCNNNNNNNGC	1 cut(s)	101
NarI	GGCGCC	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	4 cut(s)	51, 175, 340, 341
NmuCI	GTSAC	2 cut(s)	223, 328
PfeI	GAWTC	2 cut(s)	156, 205
PkrI	GCNGC	1 cut(s)	97
PleI	GAGTC	1 cut(s)	241
PluTI	GGCGCC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	339
PspN4I	GGNNCC	4 cut(s)	51, 175, 340, 341
PspPI	GGNCC	3 cut(s)	44, 121, 339
PspPPI	RGGWCCY	1 cut(s)	339
PstNI	CAGNNNCTG	1 cut(s)	266
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	3 cut(s)	44, 121, 339
SchI	GAGTC	1 cut(s)	242
SetI	ASST	5 cut(s)	9, 89, 260, 273, 310
SfaNI	GCATC	2 cut(s)	206, 253
SfcI	CTRYAG	1 cut(s)	228
SfoI	GGCGCC	1 cut(s)	51
SinI	GGWCC	2 cut(s)	44, 339
SsiI	CCGC	2 cut(s)	95, 153
SspDI	GGCGCC	1 cut(s)	49
SspMI	CTAG	3 cut(s)	74, 101, 344
StyI	CCWWGG	2 cut(s)	117, 169
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	156, 205
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	223, 328
Tsp45I	GTSAC	2 cut(s)	223, 328
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	2 cut(s)	44, 339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	3 cut(s)	74, 101, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.