Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

48900208 .. 48902202

Gene Structure 1995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCGAAGCTCCGTTTCTTATGGAAAAGCTGCATGCAAGAACATATATGTGAACTTGCAGAGTAGTGTTCCGGCTAGTTATGCAGTGTCGAGCTATCTCAGGTTTCACTCCATGGCCGAGAAAAAACGTATTCATGTATCGTACGTTATCACACCCAGTACCCTGTACCCGTGTCAGTGCATCATAGCAGCTCCATCTTCTTCACCTTCACCTCCTCCCCCTTCTCCCAAGTTTACAGATAGAATTAATGGCAGGCTTGCAATTGTGGGCTTCATATCCCACAGTCCCGGAATCCCACTGTTCATCGGCACCGATGTGTTGCTATCAGTGGCATCCTTGGTTCCTTTGTTGAAAGGGGTGAGCGTGGAGTCCAAATCAGATGGGATCATGACATCAGCTGAGCTCTGGAATGGAAGGCTAGCCATGTTGGGTCTTGTAGCTTTAGCCTTCGCCGAATATGTGACCGGTGGAACCCTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

160

Amino Acids

16.96

Weight (kDa)

9.41

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	3 cut(s)	143, 160, 167
AgeI	ACCGGT	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	352
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	7 cut(s)	9, 29, 93, 191, 398, 403, 440
AluI	AGCT	7 cut(s)	9, 29, 93, 191, 398, 403, 440
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	29, 188
AseI	ATTAAT	1 cut(s)	246
AsiGI	ACCGGT	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	3 cut(s)	195, 201, 370
AsuNHI	GCTAGC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	16, 200
BccI	CCATC	2 cut(s)	202, 374
BcnI	CCSGG	1 cut(s)	288
BfaI	CTAG	3 cut(s)	75, 419, 476
BisI	GCNGC	2 cut(s)	30, 189
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	2 cut(s)	31, 190
Bme1390I	CCNGG	1 cut(s)	288
BmiI	GGNNCC	3 cut(s)	310, 342, 472
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	189, 341
BmtI	GCTAGC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	111, 336
BsaWI	WCCGGW	1 cut(s)	464
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	111, 336
BseGI	GGATG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	112, 390
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	16, 200
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	308
BshTI	ACCGGT	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	71, 288, 465
BsiWI	CGTACG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	384
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	111, 391
BspHI	TCATGA	1 cut(s)	387
BspLI	GGNNCC	3 cut(s)	310, 342, 472
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	111, 336
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	111, 336
Bst4CI	ACNGT	2 cut(s)	284, 300
BstC8I	GCNNGC	4 cut(s)	34, 254, 258, 420
BstDEI	CTNAG	2 cut(s)	98, 399
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	16, 200
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	4 cut(s)	90, 182, 296, 333
Cac8I	GCNNGC	4 cut(s)	34, 254, 258, 420
CciI	TCATGA	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	464
Csp6I	GTAC	3 cut(s)	142, 159, 166
CspAI	ACCGGT	1 cut(s)	464
CviAII	CATG	5 cut(s)	33, 112, 134, 388, 424
CviQI	GTAC	3 cut(s)	142, 159, 166
DdeI	CTNAG	2 cut(s)	98, 399
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	114
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	111, 336
Eco24I	GRGCYC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoT14I	CCWWGG	2 cut(s)	111, 336
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	2 cut(s)	111, 336
FaeI	CATG	5 cut(s)	36, 115, 137, 391, 427
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	5 cut(s)	32, 111, 133, 387, 423
Fnu4HI	GCNGC	2 cut(s)	30, 189
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	2 cut(s)	30, 189
FspBI	CTAG	3 cut(s)	75, 419, 476
GluI	GCNGC	2 cut(s)	30, 189
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	3 cut(s)	71, 288, 465
Hin1II	CATG	5 cut(s)	36, 115, 137, 391, 427
HinfI	GANTC	2 cut(s)	291, 368
HpaII	CCGG	3 cut(s)	71, 288, 465
HphI	GGTGA	3 cut(s)	195, 201, 370
Hpy166II	GTNNAC	2 cut(s)	52, 234
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	2 cut(s)	388, 406
Hpy8I	GTNNAC	2 cut(s)	52, 234
HpyAV	CCTTC	4 cut(s)	216, 231, 408, 457
HpyCH4III	ACNGT	2 cut(s)	284, 300
HpyCH4IV	ACGT	2 cut(s)	127, 144
HpyCH4V	TGCA	6 cut(s)	32, 36, 58, 83, 180, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	98, 399
HpySE526I	ACGT	2 cut(s)	127, 144
Hsp92II	CATG	5 cut(s)	36, 115, 137, 391, 427
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	14, 196
LpnPI	CCDG	8 cut(s)	84, 85, 169, 176, 238, 301, 391, 478
Lsp1109I	GCAGC	2 cut(s)	16, 200
LweI	GCATC	2 cut(s)	189, 341
MaeI	CTAG	3 cut(s)	75, 419, 476
MaeII	ACGT	2 cut(s)	127, 144
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	2 cut(s)	189, 192
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	2 cut(s)	243, 261
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	2 cut(s)	222, 225
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	47, 314
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	3 cut(s)	71, 288, 465
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	384
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	5 cut(s)	36, 115, 137, 391, 427
NlaIV	GGNNCC	3 cut(s)	310, 342, 472
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	460
NspI	RCATGY	1 cut(s)	36
OliI	CACNNNNGTG	1 cut(s)	314
PaeI	GCATGC	1 cut(s)	36
PagI	TCATGA	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	291
Pfl23II	CGTACG	1 cut(s)	141
PfoI	TCCNGGA	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	31, 190
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PshBI	ATTAAT	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	405
PspLI	CGTACG	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	310, 342, 472
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	3 cut(s)	143, 160, 167
RsaNI	GTAC	3 cut(s)	142, 159, 166
RseI	CAYNNNNRTG	2 cut(s)	47, 314
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	30, 189
Sau3AI	GATC	1 cut(s)	384
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	2 cut(s)	189, 341
SmiMI	CAYNNNNRTG	2 cut(s)	47, 314
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	243, 261
SspMI	CTAG	3 cut(s)	75, 419, 476
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	2 cut(s)	111, 336
TaaI	ACNGT	2 cut(s)	284, 300
TaiI	ACGT	2 cut(s)	130, 147
TaqI	TCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	243, 261
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	4 cut(s)	90, 182, 303, 333
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	29, 188
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	3 cut(s)	122, 262, 292
TspRI	CASTG	4 cut(s)	90, 182, 303, 333
VspI	ATTAAT	1 cut(s)	246
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	3 cut(s)	75, 419, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.