Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

7727332 .. 7728312

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG103600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTGCTATATGATCATCTATGTGCAGGATGGTCAGAAGGAGCAACAGACCAGTGTACCTAGTACATTAGAAAGTTCACAGAAATCAGCTCCTTCATCACCTCTTCCTCCTCGATCTCCTAAGGTCAGCACCAAGTTTTCAGACGTGTTTGCATTTAGTGGACCGGCGCCGGAGAGAATCAACGGCAGGCTAGCAATGGTGGGCTTTGTGGCGGCTCTAGCAGTCGAACTATCCAAGGGCCAAGATGTGTTTGCTCAGTTATCCGACGGCGGAATCCCATTGTTCCTTGGCACCAGTATTTTGCTATCAGTGGCATCGTTGATTCCATTGTTGAAGGGTGTGACTGTAGAGTCCAAATCAGAAGGGTTGATGACCTCAGATGCTGAGCTATGGAATGGAAGATTGGCCATGTTGGGGCTGGTAGCTCTGGCCTTCACTGAGTATGTGACAGGAGGGACCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

155

Amino Acids

16.33

Weight (kDa)

5.07

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	56 - 147	8.7e-10	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AccB1I	GGYRCC	2 cut(s)	166, 290
AciI	CCGC	2 cut(s)	212, 270
AcoI	YGGCCR	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	167
AfaI	GTAC	2 cut(s)	57, 64
AfiI	CCNNNNNNNGG	1 cut(s)	414
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	334
AjiI	CACGTC	1 cut(s)	145
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	3 cut(s)	89, 388, 425
AluI	AGCT	3 cut(s)	89, 388, 425
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	238, 405, 429
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	3 cut(s)	161, 238, 456
AsuHPI	GGTGA	1 cut(s)	90
AsuNHI	GCTAGC	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	161, 456
AxyI	CCTNAGG	1 cut(s)	120
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	2 cut(s)	166, 290
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	2 cut(s)	199, 283
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	4 cut(s)	60, 191, 218, 461
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	1 cut(s)	213
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	214
Bme18I	GGWCC	2 cut(s)	161, 456
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	161, 238, 456
BmiI	GGNNCC	4 cut(s)	168, 292, 457, 458
BmsI	GCATC	2 cut(s)	323, 370
BmtI	GCTAGC	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	234, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	51, 294
Bse21I	CCTNAGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	234, 286
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	4 cut(s)	269, 375, 390, 429
BseNI	ACTGG	2 cut(s)	51, 294
BseRI	GAGGAG	1 cut(s)	99
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	240, 407, 431
BshNI	GGYRCC	2 cut(s)	166, 290
BsiSI	CCGG	2 cut(s)	164, 170
BslI	CCNNNNNNNGG	1 cut(s)	414
BsnI	GGCC	3 cut(s)	240, 407, 431
Bsp143I	GATC	2 cut(s)	12, 113
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	2 cut(s)	212, 270
BspANI	GGCC	3 cut(s)	240, 407, 431
BspCNI	CTCAG	4 cut(s)	268, 376, 389, 430
BspLI	GGNNCC	4 cut(s)	168, 292, 457, 458
BspOI	GCTAGC	1 cut(s)	194
BspT107I	GGYRCC	2 cut(s)	166, 290
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	51, 294
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	234, 286
BssMI	GATC	2 cut(s)	12, 113
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	2 cut(s)	234, 286
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	188, 192
BstDEI	CTNAG	5 cut(s)	120, 255, 376, 384, 438
BstF5I	GGATG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	15, 116
BstMBI	GATC	2 cut(s)	12, 113
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	345
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	240, 407, 431
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	3 cut(s)	58, 315, 435
Cac8I	GCNNGC	2 cut(s)	188, 192
CaiI	CAGNNNCTG	1 cut(s)	383
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	3 cut(s)	161, 238, 456
Csp6I	GTAC	2 cut(s)	56, 63
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	2 cut(s)	56, 63
DdeI	CTNAG	5 cut(s)	120, 255, 376, 384, 438
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	2 cut(s)	14, 115
DpnII	GATC	2 cut(s)	12, 113
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	234, 286
Eco47I	GGWCC	2 cut(s)	161, 456
Eco81I	CCTNAGG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	456
EcoT14I	CCWWGG	2 cut(s)	234, 286
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	2 cut(s)	234, 286
FaeI	CATG	1 cut(s)	412
FaiI	YATR	6 cut(s)	9, 11, 21, 391, 410, 444
FatI	CATG	1 cut(s)	408
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	4 cut(s)	60, 191, 218, 461
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	240, 407, 431
HapII	CCGG	2 cut(s)	164, 170
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	4 cut(s)	177, 273, 322, 350
HpaII	CCGG	2 cut(s)	164, 170
HphI	GGTGA	1 cut(s)	90
Hpy166II	GTNNAC	3 cut(s)	56, 77, 161
Hpy188I	TCNGA	5 cut(s)	36, 142, 265, 361, 379
Hpy8I	GTNNAC	3 cut(s)	56, 77, 161
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	5 cut(s)	31, 102, 328, 356, 442
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	25, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	5 cut(s)	120, 255, 376, 384, 438
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	167
KasI	GGCGCC	1 cut(s)	166
KflI	GGGWCCC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	12, 113
LmnI	GCTCC	2 cut(s)	40, 94
LpnPI	CCDG	9 cut(s)	11, 64, 172, 177, 183, 307, 404, 413, 435
LweI	GCATC	2 cut(s)	323, 370
MaeI	CTAG	4 cut(s)	60, 191, 218, 461
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	340, 445
MalI	GATC	2 cut(s)	14, 115
MboI	GATC	2 cut(s)	12, 113
MboII	GAAGA	2 cut(s)	95, 411
MlsI	TGGCCA	1 cut(s)	407
MluNI	TGGCCA	1 cut(s)	407
Mly113I	GGCGCC	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	111, 117, 120, 385, 446
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	20
Msp20I	TGGCCA	1 cut(s)	407
MspI	CCGG	2 cut(s)	164, 170
MwoI	GCNNNNNNNGC	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	167
NdeII	GATC	2 cut(s)	12, 113
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	4 cut(s)	168, 292, 457, 458
NmuCI	GTSAC	2 cut(s)	340, 445
PfeI	GAWTC	3 cut(s)	177, 273, 322
PkrI	GCNGC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	358
PluTI	GGCGCC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	456
PspN4I	GGNNCC	4 cut(s)	168, 292, 457, 458
PspPI	GGNCC	3 cut(s)	161, 238, 456
PspPPI	RGGWCCY	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	57, 64
RsaNI	GTAC	2 cut(s)	56, 63
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	2 cut(s)	12, 113
Sau96I	GGNCC	3 cut(s)	161, 238, 456
SchI	GAGTC	1 cut(s)	359
SetI	ASST	8 cut(s)	61, 91, 103, 126, 147, 377, 390, 427
SfaNI	GCATC	2 cut(s)	323, 370
SfcI	CTRYAG	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	168
SinI	GGWCC	2 cut(s)	161, 456
SmiMI	CAYNNNNRTG	1 cut(s)	20
SsiI	CCGC	2 cut(s)	212, 270
SspDI	GGCGCC	1 cut(s)	166
SspMI	CTAG	4 cut(s)	60, 191, 218, 461
StyI	CCWWGG	2 cut(s)	234, 286
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	112, 225
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	3 cut(s)	177, 273, 322
TscAI	CASTG	3 cut(s)	58, 315, 442
TseFI	GTSAC	2 cut(s)	340, 445
Tsp45I	GTSAC	2 cut(s)	340, 445
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	3 cut(s)	58, 315, 442
VpaK11BI	GGWCC	2 cut(s)	161, 456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	4 cut(s)	60, 191, 218, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.