Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

5238669 .. 5239386

Gene Structure 718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAATCGATTCTGGGAAGCTCCGTGGCTTACGGAGCATGCAAGAACAAAGTGAACCAGATAAACGTTTCTGCTGTTACTTATGCTCCAAGCTATCTTCAAAGGTTTTCCAACATGAGGGATGGTCAGAATAAGGAGCAACAAACTACTGTACCAAGCACCTTAGGAAGTTCACAGACACCAGCTCCTTCATCACCTCTTCCTCCTCGATCTCCTAAGGTCAGCACAACGTTTTCAGACACTTTTGCATTTAGTGGACCGGCGCCAGAGAGAATCAACGGCAGGCTAGCAATGGCGGGCTTTGTGGCGGCTCTAGCGGTCGAACTATCCAAGGGTCAATACGTGTTTGCTCAGTTATTCAACGGCGGAATCCCATTGTTCCTTGGCACCAGTATTTTGCTTTCAGTGGCATCCTTGGTTCCATTGTTAAAGGGTGTGACTGTGGAGTCCAAACAAAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

155

Amino Acids

16.18

Weight (kDa)

9.87

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	445
AccB1I	GGYRCC	2 cut(s)	262, 386
AciI	CCGC	4 cut(s)	296, 308, 317, 366
AclI	AACGTT	2 cut(s)	66, 230
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	101, 361
AluBI	AGCT	3 cut(s)	21, 93, 185
AluI	AGCT	3 cut(s)	21, 93, 185
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	186
AsuNHI	GCTAGC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	257
AxyI	CCTNAGG	2 cut(s)	163, 216
BaeI	ACNNNNGTAYC	2 cut(s)	135, 168
BanI	GGYRCC	2 cut(s)	262, 386
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	295, 379
BfaI	CTAG	2 cut(s)	287, 314
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	3 cut(s)	264, 388, 420
BmsI	GCATC	1 cut(s)	419
BmtI	GCTAGC	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	4 cut(s)	24, 330, 382, 414
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	390
Bse21I	CCTNAGG	2 cut(s)	163, 216
Bse3DI	GCAATG	1 cut(s)	297
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	4 cut(s)	24, 330, 382, 414
BseGI	GGATG	2 cut(s)	127, 410
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	321
BshNI	GGYRCC	2 cut(s)	262, 386
BshVI	ATCGAT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	209
BspACI	CCGC	4 cut(s)	296, 308, 317, 366
BspCNI	CTCAG	1 cut(s)	364
BspDI	ATCGAT	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	264, 388, 420
BspOI	GCTAGC	1 cut(s)	290
BspT107I	GGYRCC	2 cut(s)	262, 386
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	24, 330, 382, 414
BssMI	GATC	1 cut(s)	209
BssNI	GRCGYC	1 cut(s)	263
BssT1I	CCWWGG	3 cut(s)	330, 382, 414
Bst4CI	ACNGT	2 cut(s)	151, 442
Bst6I	CTCTTC	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	4 cut(s)	40, 284, 288, 298
BstDEI	CTNAG	3 cut(s)	163, 216, 351
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	127, 410
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 314
BstNSI	RCATGY	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	8
Bsu36I	CCTNAGG	2 cut(s)	163, 216
BsuTUI	ATCGAT	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	127, 410
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	4 cut(s)	40, 284, 288, 298
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	257
ClaI	ATCGAT	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	39, 115
CviJI	RGCY	7 cut(s)	21, 29, 93, 185, 286, 300, 311
CviKI_1	RGCY	7 cut(s)	21, 29, 93, 185, 286, 300, 311
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	3 cut(s)	163, 216, 351
DinI	GGCGCC	1 cut(s)	264
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
DrdI	GACNNNNNNGTC	1 cut(s)	445
DseDI	GACNNNNNNGTC	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	381
Eco130I	CCWWGG	3 cut(s)	330, 382, 414
Eco47I	GGWCC	1 cut(s)	257
Eco81I	CCTNAGG	2 cut(s)	163, 216
EcoT14I	CCWWGG	3 cut(s)	330, 382, 414
EgeI	GGCGCC	1 cut(s)	264
EheI	GGCGCC	1 cut(s)	264
ErhI	CCWWGG	3 cut(s)	330, 382, 414
FaeI	CATG	2 cut(s)	42, 118
FaiI	YATR	3 cut(s)	40, 84, 116
FatI	CATG	2 cut(s)	38, 114
FauI	CCCGC	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	134, 397
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	2 cut(s)	287, 314
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	266
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	42, 118
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	4 cut(s)	10, 273, 369, 446
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	3 cut(s)	55, 173, 257
Hpy188I	TCNGA	2 cut(s)	129, 238
Hpy8I	GTNNAC	3 cut(s)	55, 173, 257
HpyAV	CCTTC	1 cut(s)	198
HpyCH4III	ACNGT	2 cut(s)	151, 442
HpyCH4IV	ACGT	3 cut(s)	66, 230, 342
HpyCH4V	TGCA	3 cut(s)	4, 42, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 314
HpyF3I	CTNAG	3 cut(s)	163, 216, 351
HpySE526I	ACGT	3 cut(s)	66, 230, 342
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	42, 118
HspAI	GCGC	1 cut(s)	263
KasI	GGCGCC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	5 cut(s)	26, 35, 91, 136, 190
LpnPI	CCDG	6 cut(s)	71, 195, 268, 273, 279, 403
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	2 cut(s)	287, 314
MaeII	ACGT	3 cut(s)	66, 230, 342
MaeIII	GTNAC	2 cut(s)	76, 436
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	2 cut(s)	89, 191
Mly113I	GGCGCC	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	111, 207, 213, 216
MseI	TTAA	1 cut(s)	428
MspI	CCGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	35, 314
NarI	GGCGCC	1 cut(s)	263
NdeII	GATC	1 cut(s)	209
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	2 cut(s)	42, 118
NlaIV	GGNNCC	3 cut(s)	264, 388, 420
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	42
PaeI	GCATGC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	10, 273, 369
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	1 cut(s)	454
PluTI	GGCGCC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	343
Psp1406I	AACGTT	2 cut(s)	66, 230
PspN4I	GGNNCC	3 cut(s)	264, 388, 420
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	209
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	419
SfoI	GGCGCC	1 cut(s)	264
SinI	GGWCC	1 cut(s)	257
SphI	GCATGC	1 cut(s)	42
SsiI	CCGC	4 cut(s)	296, 308, 317, 366
SspDI	GGCGCC	1 cut(s)	262
SspMI	CTAG	2 cut(s)	287, 314
StyI	CCWWGG	3 cut(s)	330, 382, 414
TaaI	ACNGT	2 cut(s)	151, 442
TaiI	ACGT	3 cut(s)	69, 233, 345
TaqI	TCGA	3 cut(s)	8, 208, 321
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	3 cut(s)	10, 273, 369
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	2 cut(s)	13, 48
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	257
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	2 cut(s)	287, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.