Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

60948116 .. 60948849

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCGATCCTCCCCTCCTGAAGCCCACTAAAGATTCCGGCAGCTGGTTCCGGGATAGAGGATCAGGATGGTGCCTGAGTTTCGAAATGGTCAGCACAAAGTTTTCAGACGTGTTTGCATTTAGTGGTCCAGCGCCGGAGAGAATCAACGGTTGGCTAGCAATGATGGGCTTTGTGGCGGCTCTAGCAGTCGAACTATCCAAGGGCCAAGATGTGTTTGCTCAGTTATCCAACGGCGGAATCCCATTGTTCCTTGGCACCAGTATTTTGCTATCAGTGGCATCTTTGATTCCATTGTTGAAGGGTGTGACTGTAGAGTCCAAATCAAATGGGTTGATGACCTCAGATGCTGAGCTATGGAATGGAAGATTGGCCATGTTGGGGCTGGCAGCTCTGGCCTTCACTGAGTATGTGACAGGAGGGACCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

145

Amino Acids

15.24

Weight (kDa)

4.99

Isoelectric Point (pI)

17.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	316
AccB1I	GGYRCC	2 cut(s)	72, 257
AciI	CCGC	2 cut(s)	179, 237
AclWI	GGATC	2 cut(s)	2, 70
AcoI	YGGCCR	2 cut(s)	3, 372
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	2 cut(s)	45, 381
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	301
AjiI	CACGTC	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	4 cut(s)	136, 168, 353, 385
AluBI	AGCT	3 cut(s)	45, 355, 392
AluI	AGCT	3 cut(s)	45, 355, 392
AlwI	GGATC	2 cut(s)	2, 70
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	4 cut(s)	3, 205, 372, 396
ApeKI	GCWGC	2 cut(s)	42, 389
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	3 cut(s)	128, 205, 423
AsuC2I	CCSGG	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	84
AsuNHI	GCTAGC	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	128, 423
BalI	TGGCCA	1 cut(s)	374
BanI	GGYRCC	2 cut(s)	72, 257
BbvI	GCAGC	2 cut(s)	54, 401
BccI	CCATC	2 cut(s)	63, 160
BceAI	ACGGC	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	3 cut(s)	158, 185, 428
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	3 cut(s)	43, 180, 390
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	3 cut(s)	44, 181, 391
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	128, 423
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	128, 205, 423
BmiI	GGNNCC	5 cut(s)	50, 74, 259, 424, 425
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	290, 337
BmtI	GCTAGC	1 cut(s)	161
Bpu1102I	GCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	201, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 381
Bse1I	ACTGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	201, 253
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	2 cut(s)	45, 381
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	5 cut(s)	68, 236, 342, 357, 396
BseNI	ACTGG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	54, 401
BshFI	GGCC	4 cut(s)	5, 207, 374, 398
BshNI	GGYRCC	2 cut(s)	72, 257
BsiSI	CCGG	3 cut(s)	39, 52, 137
BslI	CCNNNNNNNGG	2 cut(s)	45, 381
BsnI	GGCC	4 cut(s)	5, 207, 374, 398
Bsp119I	TTCGAA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	7, 62
Bsp1720I	GCTNAGC	1 cut(s)	351
BspACI	CCGC	2 cut(s)	179, 237
BspANI	GGCC	4 cut(s)	5, 207, 374, 398
BspCNI	CTCAG	5 cut(s)	69, 235, 343, 356, 397
BspLI	GGNNCC	5 cut(s)	50, 74, 259, 424, 425
BspOI	GCTAGC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	2, 70
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	2 cut(s)	72, 257
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	201, 253
BssMI	GATC	2 cut(s)	7, 62
BssT1I	CCWWGG	2 cut(s)	201, 253
Bst4CI	ACNGT	2 cut(s)	152, 313
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	159, 387
BstDEI	CTNAG	5 cut(s)	77, 222, 343, 351, 405
BstF5I	GGATG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	2 cut(s)	10, 65
BstMBI	GATC	2 cut(s)	7, 62
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 395
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	54, 401
BsuRI	GGCC	4 cut(s)	5, 207, 374, 398
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	2 cut(s)	282, 402
Cac8I	GCNNGC	2 cut(s)	159, 387
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	128, 205, 423
CviAII	CATG	1 cut(s)	376
DdeI	CTNAG	5 cut(s)	77, 222, 343, 351, 405
DpnI	GATC	2 cut(s)	9, 64
DpnII	GATC	2 cut(s)	7, 62
DrdI	GACNNNNNNGTC	1 cut(s)	316
DseDI	GACNNNNNNGTC	1 cut(s)	316
EaeI	YGGCCR	2 cut(s)	3, 372
EciI	GGCGGA	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	201, 253
Eco47I	GGWCC	2 cut(s)	128, 423
Eco57I	CTGAAG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	201, 253
ErhI	CCWWGG	2 cut(s)	201, 253
FaeI	CATG	1 cut(s)	379
FaiI	YATR	3 cut(s)	358, 377, 411
FatI	CATG	1 cut(s)	375
Fnu4HI	GCNGC	3 cut(s)	43, 180, 390
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	43, 180, 390
FspBI	CTAG	3 cut(s)	158, 185, 428
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	43, 180, 390
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	4 cut(s)	5, 207, 374, 398
HapII	CCGG	3 cut(s)	39, 52, 137
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	5 cut(s)	35, 144, 240, 289, 317
HpaII	CCGG	3 cut(s)	39, 52, 137
Hpy188I	TCNGA	2 cut(s)	109, 346
Hpy188III	TCNNGA	2 cut(s)	19, 66
HpyAV	CCTTC	2 cut(s)	295, 409
HpyCH4III	ACNGT	2 cut(s)	152, 313
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 395
HpyF3I	CTNAG	5 cut(s)	77, 222, 343, 351, 405
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	134
KflI	GGGWCCC	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	7, 62
Lsp1109I	GCAGC	2 cut(s)	54, 401
LweI	GCATC	2 cut(s)	290, 337
MaeI	CTAG	3 cut(s)	158, 185, 428
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	307, 412
MalI	GATC	2 cut(s)	9, 64
MboI	GATC	2 cut(s)	7, 62
MboII	GAAGA	1 cut(s)	378
MlsI	TGGCCA	1 cut(s)	374
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	5 cut(s)	21, 26, 53, 352, 413
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	39, 52, 137
MspR9I	CCNGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	185, 395
NciI	CCSGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	7, 62
NheI	GCTAGC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	5 cut(s)	50, 74, 259, 424, 425
NmuCI	GTSAC	2 cut(s)	307, 412
NspV	TTCGAA	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	35, 144, 240, 289
PfoI	TCCNGGA	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	44, 181, 391
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	423
PspN4I	GGNNCC	5 cut(s)	50, 74, 259, 424, 425
PspPI	GGNCC	3 cut(s)	128, 205, 423
PspPPI	RGGWCCY	1 cut(s)	423
PstNI	CAGNNNCTG	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	45
SatI	GCNGC	3 cut(s)	43, 180, 390
Sau3AI	GATC	2 cut(s)	7, 62
Sau96I	GGNCC	3 cut(s)	128, 205, 423
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	5 cut(s)	47, 114, 344, 357, 394
SfaNI	GCATC	2 cut(s)	290, 337
SfcI	CTRYAG	1 cut(s)	312
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	2 cut(s)	128, 423
SsiI	CCGC	2 cut(s)	179, 237
SspMI	CTAG	3 cut(s)	158, 185, 428
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	2 cut(s)	201, 253
TaaI	ACNGT	2 cut(s)	152, 313
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	84, 192
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	4 cut(s)	35, 144, 240, 289
TscAI	CASTG	2 cut(s)	282, 409
TseFI	GTSAC	2 cut(s)	307, 412
TseI	GCWGC	2 cut(s)	42, 389
Tsp45I	GTSAC	2 cut(s)	307, 412
TspRI	CASTG	2 cut(s)	282, 409
VpaK11BI	GGWCC	2 cut(s)	128, 423
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	3 cut(s)	158, 185, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.