Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

21252599 .. 21253490

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCCGCAACAACTGCTATGCAATCAGTCCTTGGAAGCTCCATTGCCTACGGAGCTGCAGGCAACAACAGATCACTGAACCTGCGGTGCACCGTTCCGGCTAGTTATGCAGTTTCGAGCTATCTCAGGGTTCGCTCAATGGCCGAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAAAAGCCTCAAAGGATCCCCAGCCTGCAGCTTCTCCACCATCTCCCAAGTTTTCAGACGTGTTTGCATTCAGTGGACCAGCACCGGAGAGAATCAACGGCAGGCTGGCAATGGTGGGCTTCGTTGCTGCTCTGGCTGTCGAACTATCAAAGGGGCAAGATGTGTTTGCTCAGATATCCGACGGCCCCGGAGTACCTTTGTTCATCGGCACAAGTATTTTGCTATCAGTGGCATCCTTGGTTCCTCTATTGAAAGGAGTGACACGTGGAGTCCAAATCCGACGGGATCATGACCTCGGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAGTACGTGACTGGCAGTACCCTAGTGTAGATCTCTCTCTCATTGCTCATTACGTTTCACAGCTGGCTTATATGCACACCCCTAGCTTTGGTCTTCTCCGCGTATGTCGGTGGAACCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

219

Amino Acids

23.46

Weight (kDa)

9.69

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AccII	CGCG	1 cut(s)	636
AciI	CCGC	3 cut(s)	6, 85, 634
AclWI	GGATC	3 cut(s)	188, 201, 471
AcoI	YGGCCR	3 cut(s)	3, 141, 502
AcvI	CACGTG	1 cut(s)	443
AfaI	GTAC	3 cut(s)	372, 540, 554
AfiI	CCNNNNNNNGG	1 cut(s)	623
AflIII	ACRYGT	2 cut(s)	237, 440
AgsI	TTSAA	1 cut(s)	430
AjiI	CACGTC	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	8 cut(s)	39, 56, 120, 209, 485, 522, 598, 621
AluI	AGCT	8 cut(s)	39, 56, 120, 209, 485, 522, 598, 621
Alw21I	GWGCWC	2 cut(s)	92, 487
Alw44I	GTGCAC	1 cut(s)	88
AlwI	GGATC	3 cut(s)	188, 201, 471
AoxI	GGCC	5 cut(s)	3, 141, 361, 502, 526
ApaLI	GTGCAC	1 cut(s)	88
ApeKI	GCWGC	3 cut(s)	56, 206, 305
AspS9I	GGNCC	2 cut(s)	254, 362
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	504
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	487
BbrPI	CACGTG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	620
Bbv12I	GWGCWC	2 cut(s)	92, 487
BbvI	GCAGC	3 cut(s)	43, 218, 292
BccI	CCATC	2 cut(s)	143, 226
BceAI	ACGGC	2 cut(s)	292, 376
BcnI	CCSGG	1 cut(s)	366
BfaI	CTAG	3 cut(s)	102, 558, 618
BfmI	CTRYAG	2 cut(s)	57, 204
BfuAI	ACCTGC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	4 cut(s)	6, 57, 207, 306
BlsI	GCNGC	4 cut(s)	7, 58, 208, 307
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	254, 362
BmiI	GGNNCC	4 cut(s)	195, 364, 420, 650
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	419, 467
BpiI	GAAGAC	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	366
BsaAI	YACGTR	2 cut(s)	443, 542
BsaJI	CCNNGG	5 cut(s)	31, 144, 364, 414, 472
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	3 cut(s)	42, 294, 576
BseDI	CCNNGG	5 cut(s)	31, 144, 364, 414, 472
BseGI	GGATG	3 cut(s)	154, 410, 482
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	3 cut(s)	42, 294, 576
BseMII	CTCAG	2 cut(s)	139, 362
BseNI	ACTGG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	43, 218, 292
BseYI	CCCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	636
BshFI	GGCC	5 cut(s)	5, 143, 363, 504, 528
BsiHKAI	GWGCWC	2 cut(s)	92, 487
BsiSI	CCGG	3 cut(s)	98, 263, 366
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	5 cut(s)	5, 143, 363, 504, 528
Bsp1286I	GDGCHC	2 cut(s)	92, 487
Bsp143I	GATC	4 cut(s)	71, 193, 463, 565
BspACI	CCGC	3 cut(s)	6, 85, 634
BspANI	GGCC	5 cut(s)	5, 143, 363, 504, 528
BspCNI	CTCAG	2 cut(s)	138, 361
BspFNI	CGCG	1 cut(s)	636
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	195, 364, 420, 650
BspMAI	CTGCAG	2 cut(s)	61, 208
BspMI	ACCTGC	1 cut(s)	90
BspPI	GGATC	3 cut(s)	188, 201, 471
BsrDI	GCAATG	3 cut(s)	42, 294, 576
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	5 cut(s)	31, 144, 364, 414, 472
BssMI	GATC	4 cut(s)	71, 193, 463, 565
BssT1I	CCWWGG	2 cut(s)	31, 414
Bst4CI	ACNGT	2 cut(s)	94, 175
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBAI	YACGTR	2 cut(s)	443, 542
BstC8I	GCNNGC	5 cut(s)	61, 204, 281, 285, 600
BstDEI	CTNAG	2 cut(s)	125, 348
BstF5I	GGATG	3 cut(s)	154, 410, 482
BstFNI	CGCG	1 cut(s)	636
BstKTI	GATC	4 cut(s)	74, 196, 466, 568
BstMBI	GATC	4 cut(s)	71, 193, 463, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 53, 107, 311
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	2 cut(s)	57, 204
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	3 cut(s)	43, 218, 292
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	193, 565
BstYI	RGATCY	2 cut(s)	193, 565
BsuRI	GGCC	5 cut(s)	5, 143, 363, 504, 528
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	154, 410, 482
BtsIMutI	CAGTG	3 cut(s)	74, 256, 411
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	5 cut(s)	61, 204, 281, 285, 600
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	254, 362
Csp6I	GTAC	3 cut(s)	371, 539, 553
CviAII	CATG	2 cut(s)	467, 506
CviQI	GTAC	3 cut(s)	371, 539, 553
DdeI	CTNAG	2 cut(s)	125, 348
DpnI	GATC	4 cut(s)	73, 195, 465, 567
DpnII	GATC	4 cut(s)	71, 193, 463, 565
EaeI	YGGCCR	3 cut(s)	3, 141, 502
Ecl136II	GAGCTC	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	31, 414
Eco24I	GRGCYC	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	485
Eco72I	CACGTG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	485
EcoRV	GATATC	1 cut(s)	354
EcoT14I	CCWWGG	2 cut(s)	31, 414
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	31, 414
FaeI	CATG	2 cut(s)	470, 509
FaiI	YATR	7 cut(s)	20, 108, 468, 507, 606, 608, 640
FatI	CATG	2 cut(s)	466, 505
Fnu4HI	GCNGC	4 cut(s)	6, 57, 207, 306
FokI	GGATG	3 cut(s)	161, 397, 489
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	4 cut(s)	6, 57, 207, 306
FspBI	CTAG	3 cut(s)	102, 558, 618
GluI	GCNGC	4 cut(s)	6, 57, 207, 306
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	5 cut(s)	5, 143, 363, 504, 528
HapII	CCGG	3 cut(s)	98, 263, 366
Hin1II	CATG	2 cut(s)	470, 509
HinfI	GANTC	2 cut(s)	270, 447
HpaII	CCGG	3 cut(s)	98, 263, 366
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	90, 254
Hpy188I	TCNGA	5 cut(s)	235, 351, 358, 458, 476
Hpy188III	TCNNGA	2 cut(s)	467, 488
Hpy8I	GTNNAC	2 cut(s)	90, 254
Hpy99I	CGWCG	2 cut(s)	362, 462
HpyAV	CCTTC	2 cut(s)	490, 539
HpyCH4III	ACNGT	2 cut(s)	94, 175
HpyCH4IV	ACGT	4 cut(s)	237, 442, 541, 588
HpyCH4V	TGCA	8 cut(s)	22, 59, 90, 110, 206, 245, 480, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 53, 107, 311
HpyF3I	CTNAG	2 cut(s)	125, 348
HpySE526I	ACGT	4 cut(s)	237, 442, 541, 588
Hsp92II	CATG	2 cut(s)	470, 509
Kzo9I	GATC	4 cut(s)	71, 193, 463, 565
LmnI	GCTCC	2 cut(s)	44, 53
Lsp1109I	GCAGC	3 cut(s)	43, 218, 292
LweI	GCATC	2 cut(s)	419, 467
MaeI	CTAG	3 cut(s)	102, 558, 618
MaeII	ACGT	4 cut(s)	237, 442, 541, 588
MaeIII	GTNAC	3 cut(s)	175, 436, 542
MalI	GATC	4 cut(s)	73, 195, 465, 567
MboI	GATC	4 cut(s)	71, 193, 463, 565
MboII	GAAGA	1 cut(s)	620
MflI	RGATCY	2 cut(s)	193, 565
MhlI	GDGCHC	2 cut(s)	92, 487
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	1 cut(s)	655
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	2 cut(s)	381, 481
MnlI	CCTC	4 cut(s)	139, 196, 432, 482
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	1 cut(s)	658
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	3 cut(s)	98, 263, 366
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	245
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	4 cut(s)	14, 53, 107, 311
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	4 cut(s)	71, 193, 463, 565
NlaIII	CATG	2 cut(s)	470, 509
NlaIV	GGNNCC	4 cut(s)	195, 364, 420, 650
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	436, 542
PagI	TCATGA	1 cut(s)	466
PctI	GAATGC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	7, 58, 208, 307
PleI	GAGTC	1 cut(s)	455
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	455
Ppu21I	YACGTR	2 cut(s)	443, 542
Psp124BI	GAGCTC	1 cut(s)	487
PspCI	CACGTG	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	4 cut(s)	195, 364, 420, 650
PspPI	GGNCC	2 cut(s)	254, 362
PstI	CTGCAG	2 cut(s)	61, 208
PsuI	RGATCY	2 cut(s)	193, 565
PvuII	CAGCTG	1 cut(s)	598
RsaI	GTAC	3 cut(s)	372, 540, 554
RsaNI	GTAC	3 cut(s)	371, 539, 553
SacI	GAGCTC	1 cut(s)	487
SaqAI	TTAA	1 cut(s)	658
SatI	GCNGC	4 cut(s)	6, 57, 207, 306
Sau3AI	GATC	4 cut(s)	71, 193, 463, 565
Sau96I	GGNCC	2 cut(s)	254, 362
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	92, 487
SfaNI	GCATC	2 cut(s)	419, 467
SfcI	CTRYAG	2 cut(s)	57, 204
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	1 cut(s)	655
SsiI	CCGC	3 cut(s)	6, 85, 634
SspMI	CTAG	3 cut(s)	102, 558, 618
SstI	GAGCTC	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	2 cut(s)	31, 414
TaaI	ACNGT	2 cut(s)	94, 175
TaiI	ACGT	4 cut(s)	240, 445, 544, 591
TaqI	TCGA	2 cut(s)	116, 318
TasI	AATT	1 cut(s)	655
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TscAI	CASTG	3 cut(s)	81, 256, 411
TseFI	GTSAC	2 cut(s)	436, 542
TseI	GCWGC	3 cut(s)	56, 206, 305
Tsp45I	GTSAC	2 cut(s)	436, 542
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	3 cut(s)	81, 256, 411
VneI	GTGCAC	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	254
XspI	CTAG	3 cut(s)	102, 558, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.