Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8365229.1

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1077

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8365229.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 536 bp

caggaaagaacaggtcctcgttgcctgttcaatttgcaccaactcttcgtaggtaccctaacatgaggatacgctccatggctgagaatggtctacctgaggagaaaccatctacagtttcagaaccatcaaaggttccaccacaagcacctacacctacacctttcccaccaccacctaggactcccaaggttagcaccaagttcggggacgttttcgcctttagcggtccagcaccggagagaatcaatggcagactcgcaatggtgggctttgtttcagctcttgcagtggaactgttaaagggccaggatgtgttttctcagatctccgacgggggagtctcgctgttccttggcactagcattttgctgtcagttgcatccttgattcctctatttcaaggtgtcagcgtggagtcaaaatcaaaggggctcatgacctcagatgctgagttgtggaatggaagattggccatgttaggtttggtggctttggctttcaccgagtatgtcaagggtggaaccctaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

177

Amino Acids

18.83

Weight (kDa)

9.75

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	340
Acc65I	GGTACC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	473
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	31, 403
AjnI	CCWGG	1 cut(s)	308
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	348
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	2 cut(s)	306, 473
Asp718I	GGTACC	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	178
AspS9I	GGNCC	3 cut(s)	14, 229, 306
AsuHPI	GGTGA	1 cut(s)	495
AvaII	GGWCC	2 cut(s)	14, 229
AvrII	CCTAGG	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	98
BalI	TGGCCA	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	437
BccI	CCATC	2 cut(s)	117, 135
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	179, 362
BfmI	CTRYAG	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	62
BglII	AGATCT	1 cut(s)	326
BlnI	CCTAGG	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	2 cut(s)	14, 229
BmgT120I	GGNCC	3 cut(s)	14, 229, 306
BmiI	GGNNCC	3 cut(s)	55, 137, 525
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	2 cut(s)	391, 438
BsaJI	CCNNGG	4 cut(s)	77, 178, 188, 354
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse21I	CCTNAGG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	4 cut(s)	77, 178, 188, 354
BseGI	GGATG	2 cut(s)	318, 382
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	5 cut(s)	74, 89, 337, 443, 458
BseRI	GAGGAG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	308, 475
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	348
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	308, 475
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	326
Bsp19I	CCATGG	1 cut(s)	77
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	2 cut(s)	308, 475
BspCNI	CTCAG	5 cut(s)	75, 90, 336, 444, 457
BspHI	TCATGA	1 cut(s)	437
BspLI	GGNNCC	3 cut(s)	55, 137, 525
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	269
BssECI	CCNNGG	4 cut(s)	77, 178, 188, 354
BssMI	GATC	1 cut(s)	326
BssT1I	CCWWGG	4 cut(s)	77, 178, 188, 354
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	117, 299
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	5 cut(s)	83, 98, 323, 444, 452
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	318, 382
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
Bsu36I	CCTNAGG	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	308, 475
BtgI	CCRYGG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	318, 382
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	437
Cfr13I	GGNCC	3 cut(s)	14, 229, 306
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	4 cut(s)	63, 78, 438, 477
CviJI	RGCY	8 cut(s)	82, 272, 283, 308, 435, 475, 493, 499
CviKI_1	RGCY	8 cut(s)	82, 272, 283, 308, 435, 475, 493, 499
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	5 cut(s)	83, 98, 323, 444, 452
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
DrdI	GACNNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	4 cut(s)	77, 178, 188, 354
Eco24I	GRGCYC	1 cut(s)	437
Eco47I	GGWCC	2 cut(s)	14, 229
Eco81I	CCTNAGG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	4 cut(s)	77, 178, 188, 354
EcoT38I	GRGCYC	1 cut(s)	437
ErhI	CCWWGG	4 cut(s)	77, 178, 188, 354
FaeI	CATG	4 cut(s)	66, 81, 441, 480
FaiI	YATR	5 cut(s)	64, 79, 439, 478, 512
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	4 cut(s)	62, 77, 437, 476
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	2 cut(s)	325, 369
FriOI	GRGCYC	1 cut(s)	437
FspBI	CTAG	2 cut(s)	179, 362
HaeIII	GGCC	2 cut(s)	308, 475
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	4 cut(s)	66, 81, 441, 480
HinfI	GANTC	6 cut(s)	183, 245, 257, 341, 390, 418
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	1 cut(s)	495
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	123, 326, 333, 447
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	117, 299
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	37, 289, 382
HpyF3I	CTNAG	5 cut(s)	83, 98, 323, 444, 452
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	4 cut(s)	66, 81, 441, 480
KpnI	GGTACC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	38, 110, 245, 251, 295, 322
LweI	GCATC	2 cut(s)	391, 438
MaeI	CTAG	2 cut(s)	179, 362
MaeII	ACGT	1 cut(s)	212
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	2 cut(s)	37, 479
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	437
MlsI	TGGCCA	1 cut(s)	475
MluCI	AATT	2 cut(s)	31, 530
MluNI	TGGCCA	1 cut(s)	475
MlyI	GAGTC	4 cut(s)	177, 251, 350, 427
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	5 cut(s)	27, 59, 93, 404, 453
Mox20I	TGGCCA	1 cut(s)	475
MscI	TGGCCA	1 cut(s)	475
MseI	TTAA	2 cut(s)	301, 534
Msp20I	TGGCCA	1 cut(s)	475
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
NcoI	CCATGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	4 cut(s)	66, 81, 441, 480
NlaIV	GGNNCC	3 cut(s)	55, 137, 525
PagI	TCATGA	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	245, 390
PleI	GAGTC	4 cut(s)	177, 251, 349, 426
PpsI	GAGTC	4 cut(s)	177, 251, 349, 426
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	3 cut(s)	55, 137, 525
PspPI	GGNCC	3 cut(s)	14, 229, 306
PspPPI	RGGWCCY	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	326
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	301, 534
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	3 cut(s)	14, 229, 306
SchI	GAGTC	4 cut(s)	177, 251, 350, 427
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	2 cut(s)	391, 438
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	14, 229
Sse9I	AATT	2 cut(s)	31, 530
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	2 cut(s)	179, 362
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	4 cut(s)	77, 178, 188, 354
TaaI	ACNGT	2 cut(s)	117, 299
TaiI	ACGT	1 cut(s)	215
TasI	AATT	2 cut(s)	31, 530
TfiI	GAWTC	2 cut(s)	245, 390
Tru1I	TTAA	2 cut(s)	301, 534
Tru9I	TTAA	2 cut(s)	301, 534
TscAI	CASTG	1 cut(s)	296
TspRI	CASTG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	14, 229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XmaJI	CCTAGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	179, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.