Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

17124289 .. 17125270

Gene Structure 982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTACAACAACTGTTATGCAATCGATCCTTGGAAGCTCCGTCGCTTACGGAGCTGCGGGCAAGAACAGATCACAGATGAAACTACGGAGTACTGTTCCCGCTAGTTATGCAGTATCAAGCTATCTCCGCGTGCGCTCTATGGCTGAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAACAGCCTCAAAGAATCCACAGCCAGCTGAAGCTCCTTCACCTCCTCCCCCTTCTACCAAGTTTTCAGACGTCTTTGCATTTAGTGGACCAGCACCAGAGAGAATCAACGGCAGGCTGGCGATGGTGGGTTTCGTTGCCGCTCTGGCTGTCGAACTATCAAAGGGGCAAGATGTGTTTGCTCAGATATCCAGTGGCTCCGGAGTTCCATTGTTCATTGGCACTAGTGTTTTGCTATCAGTGGCATCGTTGGTCCCTCTATTGAAGGGAGTAACCGTGGAGTCCAAATCCAACGGGATCATGACCTCAGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAGTACGTGACCGGCACTACCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

193

Amino Acids

19.92

Weight (kDa)

9.64

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	91 - 184	1.8e-09	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccBSI	CCGCTC	1 cut(s)	323
AccII	CGCG	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	380
AciI	CCGC	4 cut(s)	59, 102, 130, 321
AclWI	GGATC	2 cut(s)	22, 485
AcoI	YGGCCR	1 cut(s)	516
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	94, 554
AgsI	TTSAA	1 cut(s)	445
AhlI	ACTAGT	1 cut(s)	404
AjuI	GAANNNNNNNTTGG	2 cut(s)	497, 529
AluBI	AGCT	7 cut(s)	39, 56, 123, 209, 215, 499, 536
AluI	AGCT	7 cut(s)	39, 56, 123, 209, 215, 499, 536
Alw21I	GWGCWC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	22, 485
Aor13HI	TCCGGA	1 cut(s)	380
AoxI	GGCC	2 cut(s)	516, 540
ApeKI	GCWGC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	2 cut(s)	269, 433
AsuHPI	GGTGA	2 cut(s)	213, 538
AvaII	GGWCC	2 cut(s)	269, 433
BalI	TGGCCA	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	501
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	146, 298
BceAI	ACGGC	1 cut(s)	307
BcuI	ACTAGT	1 cut(s)	404
BfaI	CTAG	3 cut(s)	105, 405, 572
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	2 cut(s)	57, 321
BlsI	GCNGC	2 cut(s)	58, 322
BmcAI	AGTACT	1 cut(s)	94
Bme18I	GGWCC	2 cut(s)	269, 433
BmgT120I	GGNCC	2 cut(s)	269, 433
BmiI	GGNNCC	2 cut(s)	379, 435
BmsI	GCATC	2 cut(s)	434, 481
Bpu10I	CCTNAGC	1 cut(s)	147
Bsa29I	ATCGAT	1 cut(s)	26
BsaAI	YACGTR	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	31, 456
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	1 cut(s)	372
BseAI	TCCGGA	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	31, 456
BseGI	GGATG	1 cut(s)	157
BseMII	CTCAG	3 cut(s)	138, 377, 501
BseNI	ACTGG	1 cut(s)	372
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	518, 542
BshVI	ATCGAT	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	501
BsiSI	CCGG	2 cut(s)	381, 561
BslFI	GGGAC	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	518, 542
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp13I	TCCGGA	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	27, 71, 477
BspACI	CCGC	4 cut(s)	59, 102, 130, 321
BspANI	GGCC	2 cut(s)	518, 542
BspCNI	CTCAG	3 cut(s)	139, 376, 500
BspDI	ATCGAT	1 cut(s)	26
BspEI	TCCGGA	1 cut(s)	380
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	379, 435
BspPI	GGATC	2 cut(s)	22, 485
BsrBI	CCGCTC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	31, 456
BssMI	GATC	3 cut(s)	27, 71, 477
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	4 cut(s)	16, 97, 178, 457
BstACI	GRCGYC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	5 cut(s)	61, 134, 207, 296, 300
BstDEI	CTNAG	3 cut(s)	147, 363, 487
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	3 cut(s)	30, 74, 480
BstMBI	GATC	3 cut(s)	27, 71, 477
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 110, 129, 326
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	518, 542
BsuTUI	ATCGAT	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	456
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	379, 426
Cac8I	GCNNGC	5 cut(s)	61, 134, 207, 296, 300
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	560
Cfr13I	GGNCC	2 cut(s)	269, 433
ClaI	ATCGAT	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	93, 553
CviAII	CATG	2 cut(s)	481, 520
CviQI	GTAC	2 cut(s)	93, 553
DdeI	CTNAG	3 cut(s)	147, 363, 487
DpnI	GATC	3 cut(s)	29, 73, 479
DpnII	GATC	3 cut(s)	27, 71, 477
EaeI	YGGCCR	1 cut(s)	516
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	269, 433
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	484, 523
FaiI	YATR	5 cut(s)	20, 111, 143, 482, 521
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	2 cut(s)	480, 519
FauI	CCCGC	2 cut(s)	52, 109
Fnu4HI	GCNGC	2 cut(s)	57, 321
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	57, 321
FspBI	CTAG	3 cut(s)	105, 405, 572
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	57, 321
HaeIII	GGCC	2 cut(s)	518, 542
HapII	CCGG	2 cut(s)	381, 561
HhaI	GCGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	484, 523
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	196, 285, 461
HpaII	CCGG	2 cut(s)	381, 561
HphI	GGTGA	2 cut(s)	213, 538
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	250, 366, 490
Hpy188III	TCNNGA	3 cut(s)	381, 481, 502
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	5 cut(s)	228, 243, 439, 504, 553
HpyCH4III	ACNGT	4 cut(s)	16, 97, 178, 457
HpyCH4IV	ACGT	2 cut(s)	252, 555
HpyCH4V	TGCA	4 cut(s)	22, 113, 260, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 110, 129, 326
HpyF3I	CTNAG	3 cut(s)	147, 363, 487
HpySE526I	ACGT	2 cut(s)	252, 555
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	484, 523
HspAI	GCGC	1 cut(s)	136
Kpn2I	TCCGGA	1 cut(s)	380
Kzo9I	GATC	3 cut(s)	27, 71, 477
LmnI	GCTCC	4 cut(s)	44, 53, 220, 383
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	434, 481
MaeI	CTAG	3 cut(s)	105, 405, 572
MaeII	ACGT	2 cut(s)	252, 555
MaeIII	GTNAC	3 cut(s)	178, 451, 556
MalI	GATC	3 cut(s)	29, 73, 479
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	3 cut(s)	27, 71, 477
MhlI	GDGCHC	1 cut(s)	501
MlsI	TGGCCA	1 cut(s)	518
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	6 cut(s)	142, 199, 234, 237, 447, 496
Mox20I	TGGCCA	1 cut(s)	518
MroI	TCCGGA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	2 cut(s)	381, 561
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	53, 110, 129, 326
NdeII	GATC	3 cut(s)	27, 71, 477
NlaIII	CATG	2 cut(s)	484, 523
NlaIV	GGNNCC	2 cut(s)	379, 435
NmuCI	GTSAC	1 cut(s)	556
PagI	TCATGA	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	196, 285
PkrI	GCNGC	2 cut(s)	58, 322
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	556
Psp124BI	GAGCTC	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	379, 435
PspPI	GGNCC	2 cut(s)	269, 433
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	2 cut(s)	94, 554
RsaNI	GTAC	2 cut(s)	93, 553
SacI	GAGCTC	1 cut(s)	501
SatI	GCNGC	2 cut(s)	57, 321
Sau3AI	GATC	3 cut(s)	27, 71, 477
Sau96I	GGNCC	2 cut(s)	269, 433
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	2 cut(s)	434, 481
SinI	GGWCC	2 cut(s)	269, 433
SpeI	ACTAGT	1 cut(s)	404
SsiI	CCGC	4 cut(s)	59, 102, 130, 321
SspMI	CTAG	3 cut(s)	105, 405, 572
SstI	GAGCTC	1 cut(s)	501
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	4 cut(s)	16, 97, 178, 457
TaiI	ACGT	2 cut(s)	255, 558
TaqI	TCGA	2 cut(s)	26, 333
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	196, 285
TscAI	CASTG	2 cut(s)	379, 426
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	2 cut(s)	95, 385
TspGWI	ACGGA	3 cut(s)	31, 66, 103
TspRI	CASTG	2 cut(s)	379, 426
VpaK11BI	GGWCC	2 cut(s)	269, 433
XspI	CTAG	3 cut(s)	105, 405, 572
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.