Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

19890153 .. 19890857

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012563

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGCAACAACTGCTATGCAATCAATCCTTGGAAGCTCCATTGCTTGCGGAGCTGCAGGCAAGAACAGATCTCTGAACCTACTGAGTACTGTTCCTGCTAGTTATGCAGTTTCAAGCTATCTCCGCCTGCGCTCTATGGCTGAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAAAAGCCTCAAAGAATCCACAGCCAGCTGCAGCTCCTTCACCTTCACCTCCTCCCCCTTCTCCTAAGTTTTCGGAAGTGTTTGCATTCAGTGGACCAGCTCCAGAGAGAATCAACGGCAGGCTGGCAATGGTGGGCTTCGTTGCCGCTCTGGCAGTTGAAATATCCAAGGGGCAAGATGTGTTTGCTCAGATATCCAATGGCCCCGGAGTCCCATTGTTCATCGGCACAAGTGTTTTGCTATCAGTGGCATCCTTGGTTCCTCTATTGAAAGGAGTGACCGTGGAGTCCAAATCCGACGGGATCATGACCTCAGAGGCAGAGCTCATAAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAATATGTGACTGGTCGAACCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

194

Amino Acids

19.82

Weight (kDa)

9.56

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	326
AciI	CCGC	3 cut(s)	51, 127, 324
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	519
AfaI	GTAC	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	117, 338, 448
AluBI	AGCT	8 cut(s)	39, 56, 120, 206, 212, 278, 502, 539
AluI	AGCT	8 cut(s)	39, 56, 120, 206, 212, 278, 502, 539
Alw21I	GWGCWC	1 cut(s)	504
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	3 cut(s)	379, 519, 543
ApeKI	GCWGC	4 cut(s)	5, 56, 206, 209
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	272, 380
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	3 cut(s)	210, 216, 541
AvaII	GGWCC	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	504
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	43, 193, 221
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	384
BfaI	CTAG	2 cut(s)	102, 575
BfmI	CTRYAG	2 cut(s)	57, 207
BglI	GCCNNNNNGGC	1 cut(s)	329
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	5 cut(s)	6, 57, 207, 210, 324
BlsI	GCNGC	5 cut(s)	7, 58, 208, 211, 325
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	272, 380
BmiI	GGNNCC	2 cut(s)	382, 438
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	384
BsaJI	CCNNGG	5 cut(s)	31, 345, 382, 432, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	2 cut(s)	42, 312
BseDI	CCNNGG	5 cut(s)	31, 345, 382, 432, 459
BseGI	GGATG	2 cut(s)	154, 428
BseMI	GCAATG	2 cut(s)	42, 312
BseMII	CTCAG	4 cut(s)	77, 135, 380, 504
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	43, 193, 221
BshFI	GGCC	3 cut(s)	381, 521, 545
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	3 cut(s)	381, 521, 545
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	2 cut(s)	71, 480
BspACI	CCGC	3 cut(s)	51, 127, 324
BspANI	GGCC	3 cut(s)	381, 521, 545
BspCNI	CTCAG	4 cut(s)	78, 136, 379, 503
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	382, 438
BspMAI	CTGCAG	2 cut(s)	61, 211
BspPI	GGATC	1 cut(s)	488
BsrBI	CCGCTC	1 cut(s)	326
BsrDI	GCAATG	2 cut(s)	42, 312
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	5 cut(s)	31, 345, 382, 432, 459
BssMI	GATC	2 cut(s)	71, 480
BssT1I	CCWWGG	3 cut(s)	31, 345, 432
Bst4CI	ACNGT	3 cut(s)	94, 175, 460
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	6 cut(s)	49, 61, 131, 204, 299, 303
BstDEI	CTNAG	5 cut(s)	86, 144, 243, 366, 490
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	154, 428
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	74, 483
BstMBI	GATC	2 cut(s)	71, 480
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 53, 107, 126, 329
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	2 cut(s)	57, 207
BstV1I	GCAGC	3 cut(s)	43, 193, 221
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	381, 521, 545
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	154, 428
BtsIMutI	CAGTG	2 cut(s)	274, 429
Cac8I	GCNNGC	6 cut(s)	49, 61, 131, 204, 299, 303
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	272, 380
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	2 cut(s)	484, 523
CviQI	GTAC	1 cut(s)	90
DdeI	CTNAG	5 cut(s)	86, 144, 243, 366, 490
DpnI	GATC	2 cut(s)	73, 482
DpnII	GATC	2 cut(s)	71, 480
DrdI	GACNNNNNNGTC	1 cut(s)	463
DseDI	GACNNNNNNGTC	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	519
EciI	GGCGGA	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	3 cut(s)	31, 345, 432
Eco24I	GRGCYC	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	372
EcoT14I	CCWWGG	3 cut(s)	31, 345, 432
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	3 cut(s)	31, 345, 432
FaeI	CATG	2 cut(s)	487, 526
FaiI	YATR	7 cut(s)	20, 108, 140, 485, 506, 524, 558
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	2 cut(s)	483, 522
Fnu4HI	GCNGC	5 cut(s)	6, 57, 207, 210, 324
FokI	GGATG	2 cut(s)	161, 415
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	5 cut(s)	6, 57, 207, 210, 324
FspBI	CTAG	2 cut(s)	102, 575
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	5 cut(s)	6, 57, 207, 210, 324
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	381, 521, 545
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	487, 526
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	193, 288, 387, 464
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	3 cut(s)	210, 216, 541
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	5 cut(s)	78, 253, 369, 475, 493
Hpy188III	TCNNGA	2 cut(s)	281, 484
Hpy8I	GTNNAC	1 cut(s)	272
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	5 cut(s)	225, 231, 246, 507, 556
HpyCH4III	ACNGT	3 cut(s)	94, 175, 460
HpyCH4V	TGCA	6 cut(s)	8, 22, 59, 110, 209, 263
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 53, 107, 126, 329
HpyF3I	CTNAG	5 cut(s)	86, 144, 243, 366, 490
Hsp92II	CATG	2 cut(s)	487, 526
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	71, 480
LmnI	GCTCC	4 cut(s)	44, 53, 217, 283
Lsp1109I	GCAGC	3 cut(s)	43, 193, 221
LweI	GCATC	1 cut(s)	437
MaeI	CTAG	2 cut(s)	102, 575
MaeIII	GTNAC	3 cut(s)	175, 454, 559
MalI	GATC	2 cut(s)	73, 482
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	2 cut(s)	71, 480
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	504
MlsI	TGGCCA	1 cut(s)	521
MluNI	TGGCCA	1 cut(s)	521
MlyI	GAGTC	2 cut(s)	396, 473
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	7 cut(s)	139, 196, 237, 240, 450, 487, 499
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	263
MwoI	GCNNNNNNNGC	5 cut(s)	14, 53, 107, 126, 329
NciI	CCSGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	71, 480
NlaIII	CATG	2 cut(s)	487, 526
NlaIV	GGNNCC	2 cut(s)	382, 438
NmuCI	GTSAC	2 cut(s)	454, 559
PagI	TCATGA	1 cut(s)	483
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	193, 288
PkrI	GCNGC	5 cut(s)	7, 58, 208, 211, 325
PleI	GAGTC	2 cut(s)	395, 472
PpsI	GAGTC	2 cut(s)	395, 472
Psp124BI	GAGCTC	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	382, 438
PspPI	GGNCC	2 cut(s)	272, 380
PstI	CTGCAG	2 cut(s)	61, 211
PsuI	RGATCY	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	504
SatI	GCNGC	5 cut(s)	6, 57, 207, 210, 324
Sau3AI	GATC	2 cut(s)	71, 480
Sau96I	GGNCC	2 cut(s)	272, 380
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	2 cut(s)	396, 473
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	1 cut(s)	437
SfcI	CTRYAG	2 cut(s)	57, 207
SinI	GGWCC	1 cut(s)	272
SsiI	CCGC	3 cut(s)	51, 127, 324
SspMI	CTAG	2 cut(s)	102, 575
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	3 cut(s)	31, 345, 432
TaaI	ACNGT	3 cut(s)	94, 175, 460
TaqI	TCGA	1 cut(s)	568
TatI	WGTACW	1 cut(s)	89
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	193, 288
TscAI	CASTG	2 cut(s)	274, 429
TseFI	GTSAC	2 cut(s)	454, 559
TseI	GCWGC	4 cut(s)	5, 56, 206, 209
Tsp45I	GTSAC	2 cut(s)	454, 559
TspDTI	ATGAA	1 cut(s)	388
TspRI	CASTG	2 cut(s)	274, 429
VpaK11BI	GGWCC	1 cut(s)	272
XspI	CTAG	2 cut(s)	102, 575
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.