Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

27838905 .. 27840149

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1134100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTATGCAATAGTTTCCATGCAATCAATCTTTACAAGCTCTGTAGCTTATGGAGTTGGTAAGAGCAGAGTGAACCAGCTGATTGTTTCTGCTAATTATCCAGTTAGTCTACGTAAGCATGCTCACATGAGAGTAATCTCCATGGCCAAGGATGATCAGAAGGAGCAACCAACCACGTATGCATCAGAAAATTCAGAACCAGCTCCTTCATCACCTTTACCTCCTCGTCCTTCTCCTAAGGTTACCCCAAAGATTTCAGACGTGCTTGCATTTAGCGGGCCAGCACCGGAGAGAATCAACGGCAGGCTAGCAATGGTGGGATTTGTTGCAGCTCTAGCAGTGGAGCTATCCAAGGGTCAGGATGTGTTTGCTCAGATATCGAACGGTGCAGGGATCCCATTGTTTCTTGGCACCAGCATTTTATTGACAGTGGCATCCCTGGTTCCTTTACTGAAAGGGGTGAGTGCGGAGTCCAAATCAAAGGGGCTCATGACTTCAGATGCTGAGTTGTGGAATGGAAGGCTGGCAATGTTGGGACTTGTAGCTTTGGCCTTCACTGAGTATGTGAAGGGTGGGACCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

196

Amino Acids

20.56

Weight (kDa)

9.52

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	95 - 187	2.5e-10	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	2 cut(s)	276, 467
AclWI	GGATC	2 cut(s)	388, 401
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	480
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	7 cut(s)	39, 47, 79, 203, 332, 346, 545
AluI	AGCT	7 cut(s)	39, 47, 79, 203, 332, 346, 545
AlwI	GGATC	2 cut(s)	388, 401
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	3 cut(s)	144, 278, 549
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	278, 576
AsuHPI	GGTGA	2 cut(s)	204, 472
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	576
AxyI	CCTNAGG	1 cut(s)	237
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	440
BclI	TGATCA	1 cut(s)	154
BfaI	CTAG	3 cut(s)	308, 335, 581
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	576
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	278, 576
BmiI	GGNNCC	5 cut(s)	395, 412, 444, 577, 578
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	3 cut(s)	191, 443, 490
BmtI	GCTAGC	1 cut(s)	311
BsaAI	YACGTR	2 cut(s)	113, 177
BsaJI	CCNNGG	4 cut(s)	141, 147, 351, 438
BsaWI	WCCGGW	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	101
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	2 cut(s)	318, 534
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	4 cut(s)	141, 147, 351, 438
BseGI	GGATG	3 cut(s)	157, 367, 434
BseMI	GCAATG	2 cut(s)	318, 534
BseMII	CTCAG	3 cut(s)	386, 495, 549
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	146, 280, 551
BshNI	GGYRCC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	3 cut(s)	146, 280, 551
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	154, 393
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	2 cut(s)	276, 467
BspANI	GGCC	3 cut(s)	146, 280, 551
BspCNI	CTCAG	3 cut(s)	385, 496, 550
BspHI	TCATGA	1 cut(s)	489
BspLI	GGNNCC	5 cut(s)	395, 412, 444, 577, 578
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	388, 401
BspT107I	GGYRCC	1 cut(s)	410
BsrDI	GCAATG	2 cut(s)	318, 534
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	4 cut(s)	141, 147, 351, 438
BssMI	GATC	2 cut(s)	154, 393
BssT1I	CCWWGG	3 cut(s)	141, 147, 351
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	386, 430
BstBAI	YACGTR	2 cut(s)	113, 177
BstC8I	GCNNGC	7 cut(s)	120, 267, 278, 282, 305, 309, 525
BstDEI	CTNAG	4 cut(s)	237, 372, 504, 558
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	157, 367, 434
BstKTI	GATC	2 cut(s)	157, 396
BstMBI	GATC	2 cut(s)	154, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	122
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	42
BstSNI	TACGTA	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	146, 280, 551
BtgI	CCRYGG	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	157, 367, 434
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	345, 435, 555
Cac8I	GCNNGC	7 cut(s)	120, 267, 278, 282, 305, 309, 525
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	489
Cfr13I	GGNCC	2 cut(s)	278, 576
CviAII	CATG	5 cut(s)	19, 119, 127, 142, 490
DdeI	CTNAG	4 cut(s)	237, 372, 504, 558
DpnI	GATC	2 cut(s)	156, 395
DpnII	GATC	2 cut(s)	154, 393
EaeI	YGGCCR	1 cut(s)	144
Eco105I	TACGTA	1 cut(s)	113
Eco130I	CCWWGG	3 cut(s)	141, 147, 351
Eco24I	GRGCYC	1 cut(s)	489
Eco32I	GATATC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	576
Eco57I	CTGAAG	1 cut(s)	480
Eco81I	CCTNAGG	1 cut(s)	237
Eco91I	GGTNACC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	576
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	438
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	3 cut(s)	141, 147, 351
EcoT22I	ATGCAT	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	489
ErhI	CCWWGG	3 cut(s)	141, 147, 351
FaeI	CATG	5 cut(s)	22, 122, 130, 145, 493
FaiI	YATR	9 cut(s)	6, 20, 51, 120, 128, 143, 180, 491, 564
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	5 cut(s)	18, 118, 126, 141, 489
FauI	CCCGC	1 cut(s)	269
FbaI	TGATCA	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	3 cut(s)	164, 374, 421
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	3 cut(s)	308, 335, 581
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	146, 280, 551
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	5 cut(s)	22, 122, 130, 145, 493
HinfI	GANTC	2 cut(s)	294, 470
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	2 cut(s)	204, 472
Hpy166II	GTNNAC	2 cut(s)	73, 110
Hpy188I	TCNGA	6 cut(s)	159, 187, 196, 259, 375, 499
Hpy188III	TCNNGA	2 cut(s)	359, 490
Hpy8I	GTNNAC	2 cut(s)	73, 110
HpyAV	CCTTC	6 cut(s)	154, 216, 240, 513, 562, 562
HpyCH4III	ACNGT	2 cut(s)	386, 430
HpyCH4IV	ACGT	3 cut(s)	112, 176, 261
HpyCH4V	TGCA	6 cut(s)	8, 22, 182, 269, 329, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	4 cut(s)	237, 372, 504, 558
HpySE526I	ACGT	3 cut(s)	112, 176, 261
Hsp92II	CATG	5 cut(s)	22, 122, 130, 145, 493
KflI	GGGWCCC	1 cut(s)	576
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	154, 393
LmnI	GCTCC	3 cut(s)	163, 208, 343
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	3 cut(s)	191, 443, 490
MaeI	CTAG	3 cut(s)	308, 335, 581
MaeII	ACGT	3 cut(s)	112, 176, 261
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	2 cut(s)	156, 395
MboI	GATC	2 cut(s)	154, 393
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	2 cut(s)	94, 190
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	479
MnlI	CCTC	2 cut(s)	231, 234
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	146
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	2 cut(s)	154, 393
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	5 cut(s)	22, 122, 130, 145, 493
NlaIV	GGNNCC	5 cut(s)	395, 412, 444, 577, 578
NsiI	ATGCAT	1 cut(s)	184
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PagI	TCATGA	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	478
Ppu21I	YACGTR	2 cut(s)	113, 177
PpuMI	RGGWCCY	1 cut(s)	576
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	5 cut(s)	395, 412, 444, 577, 578
PspPI	GGNCC	2 cut(s)	278, 576
PspPPI	RGGWCCY	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	79
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	154, 393
Sau96I	GGNCC	2 cut(s)	278, 576
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	3 cut(s)	191, 443, 490
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	576
SnaBI	TACGTA	1 cut(s)	113
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	94, 190
SsiI	CCGC	2 cut(s)	276, 467
SspMI	CTAG	3 cut(s)	308, 335, 581
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	3 cut(s)	141, 147, 351
TaaI	ACNGT	2 cut(s)	386, 430
TaiI	ACGT	3 cut(s)	115, 179, 264
TaqI	TCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	94, 190
TfiI	GAWTC	1 cut(s)	294
TscAI	CASTG	3 cut(s)	345, 435, 562
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	3 cut(s)	345, 435, 562
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	3 cut(s)	308, 335, 581
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.