Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

59158668 .. 59159082

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCTTCAACGGTTGCAATGCAATCGATTCTGGGAAGCTCTGTGGATTATGGAGCAGGCAAGAATAGAGTGAACCAGATAAATGTTTCTGCTGTTACTTATGCTCCAAGCTATTTGCATAGGTTCTCCCCCATGCAATGGGTGCGCTCCATGGCTGAGGTTAAATTGGAGAAAAGAATGATTTGGAGTTTAAAGTCAAACGCGGGATTGAAAGGATGCTTGCTATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

76

Amino Acids

8.37

Weight (kDa)

10.01

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	138
AccII	CGCG	1 cut(s)	203
AciI	CCGC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	9, 211
AluBI	AGCT	2 cut(s)	39, 111
AluI	AGCT	2 cut(s)	39, 111
AspLEI	GCGC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	156
BcgI	CGANNNNNNTGC	2 cut(s)	6, 40
BmsI	GCATC	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	156
Bsa29I	ATCGAT	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse3DI	GCAATG	2 cut(s)	24, 143
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	2 cut(s)	24, 143
BseMII	CTCAG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	203
BsrDI	GCAATG	2 cut(s)	24, 143
BssECI	CCNNGG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	58, 221
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstUI	CGCG	1 cut(s)	203
Bsu15I	ATCGAT	1 cut(s)	26
BsuTUI	ATCGAT	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	58, 221
CfoI	GCGC	1 cut(s)	147
ClaI	ATCGAT	1 cut(s)	26
CviAII	CATG	2 cut(s)	133, 151
CviJI	RGCY	4 cut(s)	5, 39, 111, 155
CviKI_1	RGCY	4 cut(s)	5, 39, 111, 155
DdeI	CTNAG	1 cut(s)	156
DraI	TTTAAA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	136, 154
FaiI	YATR	5 cut(s)	51, 102, 120, 134, 152
FatI	CATG	2 cut(s)	132, 150
FauI	CCCGC	1 cut(s)	196
GlaI	GCGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	136, 154
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	4 cut(s)	17, 22, 118, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	136, 154
HspAI	GCGC	1 cut(s)	145
LmnI	GCTCC	3 cut(s)	53, 109, 152
LpnPI	CCDG	3 cut(s)	17, 42, 89
LweI	GCATC	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	94
MluCI	AATT	1 cut(s)	164
MnlI	CCTC	1 cut(s)	151
MseI	TTAA	2 cut(s)	162, 191
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	142
NcoI	CCATGG	1 cut(s)	150
NlaIII	CATG	2 cut(s)	136, 154
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	138
SaqAI	TTAA	2 cut(s)	162, 191
SetI	ASST	4 cut(s)	41, 113, 125, 162
SfaNI	GCATC	1 cut(s)	206
SgeI	CNNG	9 cut(s)	44, 69, 73, 88, 120, 145, 163, 214, 216
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	162, 191
Tru9I	TTAA	2 cut(s)	162, 191
Van91I	CCANNNNNTGG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.