Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Reverse (-)

48543012 .. 48547500

Gene Structure 4489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G025250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTGCAACAACTGCTATGCAATCAATCCTTGGAAGCTCCATTACTTGCGAAGCTGCAGGCAAGAACAGATCTCTGAACCTACAGAGTACTGTTCCTGCTAGTTATGCAGTTTCAAGCTATCTCCGCGTGCGCTCTATGGCCGAGGATGGTCAAAAGAAGCAACCAACAACTGTAACAAAAGCCTCAAAGAATCCACAGCCAGCTGGAACTCCTTCTCCTTCACCTTCACCTCCTCCCCCTTCTCCTAAGTTTTCGGAACCTGCAGCTTCTCCACCATCTCCCAAGTTTTCAGACGTGTTTGCATTCAGTGGACCAGCACCGGAGAGAATCAACGGCAGGCTGGCAATGGTGGGCTTCGTTGCAGCTCTGGCTGTCGAACTATCAAAGGGGCAAGATGTGTTTGCTCAGATATCCAACGGCCCCGGGGTACCTTTGTTCATCGGCACAAGTATTTTGCTATCAGTAGCATCCTTGGTTCCTCTATTGAAAGGAGTGACCGTGGAGTCCAAATCCGACGGGATCTTTACCTCGGATGCAGAGCTCTGGAATGGAAGGTTGGCCATGTTGGGTCTTGTAGCTTTGGCCTTCACCGAGTACGTGACCGGCAGTGCCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

207

Amino Acids

21.3

Weight (kDa)

9.1

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	107 - 199	9.2e-10	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	505
Acc36I	ACCTGC	1 cut(s)	271
Acc65I	GGTACC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	430
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	2 cut(s)	141, 561
AfaI	GTAC	3 cut(s)	91, 432, 599
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	2 cut(s)	117, 490
AjiI	CACGTC	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
AluBI	AGCT	8 cut(s)	39, 56, 120, 206, 269, 368, 544, 581
AluI	AGCT	8 cut(s)	39, 56, 120, 206, 269, 368, 544, 581
Alw21I	GWGCWC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	4 cut(s)	141, 421, 561, 585
ApeKI	GCWGC	4 cut(s)	5, 56, 266, 365
Asp700I	GAANNNNTTC	1 cut(s)	214
Asp718I	GGTACC	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	314, 422
AsuC2I	CCSGG	2 cut(s)	426, 427
AsuHPI	GGTGA	3 cut(s)	216, 222, 583
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	616
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BalI	TGGCCA	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	546
BarI	GAAGNNNNNNTAC	2 cut(s)	28, 60
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	43, 278, 377
BccI	CCATC	2 cut(s)	143, 286
BceAI	ACGGC	2 cut(s)	352, 436
BcnI	CCSGG	2 cut(s)	426, 427
BfaI	CTAG	2 cut(s)	102, 617
BfmI	CTRYAG	3 cut(s)	57, 83, 264
BfuAI	ACCTGC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	4 cut(s)	6, 57, 267, 366
BlsI	GCNGC	4 cut(s)	7, 58, 268, 367
BmcAI	AGTACT	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	426, 427
Bme18I	GGWCC	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	425
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	314, 422
BmiI	GGNNCC	4 cut(s)	261, 424, 432, 480
BmrFI	CCNGG	2 cut(s)	426, 427
BmsI	GCATC	2 cut(s)	479, 526
BpuMI	CCSGG	2 cut(s)	426, 427
BsaAI	YACGTR	1 cut(s)	601
BsaJI	CCNNGG	8 cut(s)	31, 144, 424, 425, 426, 474, 501, 531
BsaWI	WCCGGW	1 cut(s)	322
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 486, 516
Bse118I	RCCGGY	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	354
BseDI	CCNNGG	8 cut(s)	31, 144, 424, 425, 426, 474, 501, 531
BseGI	GGATG	3 cut(s)	154, 470, 541
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	422
BseRI	GAGGAG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	43, 278, 377
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	143, 423, 563, 587
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	3 cut(s)	323, 426, 606
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	143, 423, 563, 587
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	546, 616
Bsp143I	GATC	2 cut(s)	71, 522
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	4 cut(s)	143, 423, 563, 587
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	4 cut(s)	261, 424, 432, 480
BspMAI	CTGCAG	2 cut(s)	61, 268
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	530
BspT107I	GGYRCC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	8 cut(s)	31, 144, 424, 425, 426, 474, 501, 531
BssMI	GATC	2 cut(s)	71, 522
BssT1I	CCWWGG	2 cut(s)	31, 474
Bst4CI	ACNGT	3 cut(s)	94, 175, 502
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	5 cut(s)	61, 131, 204, 341, 345
BstDEI	CTNAG	2 cut(s)	249, 408
BstDSI	CCRYGG	1 cut(s)	501
BstF5I	GGATG	3 cut(s)	154, 470, 541
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	2 cut(s)	74, 525
BstMBI	GATC	2 cut(s)	71, 522
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 107, 126, 371
BstSCI	CCNGG	2 cut(s)	424, 425
BstSFI	CTRYAG	3 cut(s)	57, 83, 264
BstSLI	GKGCMC	1 cut(s)	616
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	43, 278, 377
BstX2I	RGATCY	2 cut(s)	71, 522
BstYI	RGATCY	2 cut(s)	71, 522
BsuRI	GGCC	4 cut(s)	143, 423, 563, 587
BtgI	CCRYGG	1 cut(s)	501
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	3 cut(s)	154, 470, 541
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	2 cut(s)	316, 616
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	5 cut(s)	61, 131, 204, 341, 345
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	314, 422
Cfr9I	CCCGGG	1 cut(s)	425
Csp6I	GTAC	3 cut(s)	90, 431, 598
CviAII	CATG	1 cut(s)	565
CviQI	GTAC	3 cut(s)	90, 431, 598
DdeI	CTNAG	2 cut(s)	249, 408
DpnI	GATC	2 cut(s)	73, 524
DpnII	GATC	2 cut(s)	71, 522
DrdI	GACNNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	505
EaeI	YGGCCR	2 cut(s)	141, 561
Ecl136II	GAGCTC	1 cut(s)	544
Eco130I	CCWWGG	2 cut(s)	31, 474
Eco24I	GRGCYC	1 cut(s)	546
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	544
Eco88I	CYCGRG	1 cut(s)	425
EcoICRI	GAGCTC	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	31, 474
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	2 cut(s)	31, 474
FaeI	CATG	1 cut(s)	568
FaiI	YATR	4 cut(s)	20, 108, 140, 566
FatI	CATG	1 cut(s)	564
Fnu4HI	GCNGC	4 cut(s)	6, 57, 267, 366
FokI	GGATG	3 cut(s)	161, 457, 548
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	4 cut(s)	6, 57, 267, 366
FspBI	CTAG	2 cut(s)	102, 617
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	4 cut(s)	6, 57, 267, 366
HaeIII	GGCC	4 cut(s)	143, 423, 563, 587
HapII	CCGG	3 cut(s)	323, 426, 606
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	193, 330, 506
HpaII	CCGG	3 cut(s)	323, 426, 606
HphI	GGTGA	3 cut(s)	216, 222, 583
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	6 cut(s)	78, 259, 295, 411, 517, 535
Hpy188III	TCNNGA	1 cut(s)	547
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	6 cut(s)	225, 231, 237, 252, 549, 598
HpyCH4III	ACNGT	3 cut(s)	94, 175, 502
HpyCH4IV	ACGT	2 cut(s)	297, 600
HpyCH4V	TGCA	8 cut(s)	8, 22, 59, 110, 266, 305, 365, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 107, 126, 371
HpyF3I	CTNAG	2 cut(s)	249, 408
HpySE526I	ACGT	2 cut(s)	297, 600
Hsp92II	CATG	1 cut(s)	568
HspAI	GCGC	1 cut(s)	133
KpnI	GGTACC	1 cut(s)	434
Kzo9I	GATC	2 cut(s)	71, 522
LmnI	GCTCC	1 cut(s)	44
Lsp1109I	GCAGC	3 cut(s)	43, 278, 377
LweI	GCATC	2 cut(s)	479, 526
MaeI	CTAG	2 cut(s)	102, 617
MaeII	ACGT	2 cut(s)	297, 600
MaeIII	GTNAC	3 cut(s)	175, 496, 601
MalI	GATC	2 cut(s)	73, 524
MboI	GATC	2 cut(s)	71, 522
MflI	RGATCY	2 cut(s)	71, 522
MhlI	GDGCHC	2 cut(s)	546, 616
MlsI	TGGCCA	1 cut(s)	563
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	2 cut(s)	441, 540
MnlI	CCTC	6 cut(s)	139, 196, 243, 246, 492, 541
Mox20I	TGGCCA	1 cut(s)	563
MroXI	GAANNNNTTC	1 cut(s)	214
MscI	TGGCCA	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	3 cut(s)	323, 426, 606
MspR9I	CCNGG	2 cut(s)	426, 427
Mva1269I	GAATGC	1 cut(s)	305
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	4 cut(s)	14, 107, 126, 371
NciI	CCSGG	2 cut(s)	426, 427
NdeII	GATC	2 cut(s)	71, 522
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	4 cut(s)	261, 424, 432, 480
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	496, 601
PctI	GAATGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	193, 330
PkrI	GCNGC	4 cut(s)	7, 58, 268, 367
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
Ppu21I	YACGTR	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	546
PspN4I	GGNNCC	4 cut(s)	261, 424, 432, 480
PspPI	GGNCC	2 cut(s)	314, 422
PstI	CTGCAG	2 cut(s)	61, 268
PsuI	RGATCY	2 cut(s)	71, 522
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	91, 432, 599
RsaNI	GTAC	3 cut(s)	90, 431, 598
SacI	GAGCTC	1 cut(s)	546
SatI	GCNGC	4 cut(s)	6, 57, 267, 366
Sau3AI	GATC	2 cut(s)	71, 522
Sau96I	GGNCC	2 cut(s)	314, 422
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	426, 427
SduI	GDGCHC	2 cut(s)	546, 616
SfaNI	GCATC	2 cut(s)	479, 526
SfcI	CTRYAG	3 cut(s)	57, 83, 264
SinI	GGWCC	1 cut(s)	314
SmaI	CCCGGG	1 cut(s)	427
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	2 cut(s)	102, 617
SstI	GAGCTC	1 cut(s)	546
StyD4I	CCNGG	2 cut(s)	424, 425
StyI	CCWWGG	2 cut(s)	31, 474
TaaI	ACNGT	3 cut(s)	94, 175, 502
TaiI	ACGT	2 cut(s)	300, 603
TaqI	TCGA	1 cut(s)	378
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	193, 330
TscAI	CASTG	2 cut(s)	316, 616
TseFI	GTSAC	2 cut(s)	496, 601
TseI	GCWGC	4 cut(s)	5, 56, 266, 365
Tsp45I	GTSAC	2 cut(s)	496, 601
TspDTI	ATGAA	1 cut(s)	430
TspMI	CCCGGG	1 cut(s)	425
TspRI	CASTG	2 cut(s)	316, 616
VpaK11BI	GGWCC	1 cut(s)	314
XmaI	CCCGGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	214
XspI	CTAG	2 cut(s)	102, 617
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.