Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000396

Physical Location & Seq

Genomic Coordinates Forward (+)

33562245 .. 33562976

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0313400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATGAACTGCTGGTCCTTCGTTGGCAAAGTGTACGCCATCCTCACCCTTCAGTTACTCGCCACCATCGGCATCGGCGCCATGGTCAGACTGGACCCTTCAATTTCCCACTTCTTGCTCAAAACCCACGCCGGCATTGCCGTCTACGTCCTCATCCTCGTGACGCCCTTTGTCGTGCTGATCCCAATGCTTTGTCTCAGACACCTCAAGCCGGTTAACTACTTGTTGGTTGCAATTTTCACCGTCTCTCTTGCATTCCAAGTCGGAATTACTTGTGTTTTCACTCCTGGGATGGTGATTTTGGAGTCTGTGTTTTTAACCGCTGTGGTTTTTGTTACTCTCACACTATACACATTCTGGGCTGCTTGGAGAGGCTATGACTTTAGCTTACTAGGACCTTTCCTGTCTGAAGCCTTGCTTTGTCTGGTTATCTATGCTTTCATTCAGATATTTTACCCTCTGGGTAAGACCATGGTGATGATATTTGGGGCCTTGGGATCCATTGTTTTCTGCTTCTATATCGTATATGACACCTACATGCTGATTGAGCGCCACTCACAAGACAATGACTACATTTTAGCTGCAGTCGGCTTGTACCTGGACATCCTTAATCTTTTCGGCTTCCATATTGATCTTCTAAGCGGCTGTGATAATAATGGCTCCTGCGATTGCTGCAGTGCCGAATGCTGCGAGTGCCTAGGAGATATTAATGGTGGGGAATGTTTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

243

Amino Acids

26.86

Weight (kDa)

4.81

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	6 - 208	5.9e-35	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22840 AT4G14690
fragaria_vesca	FvH4_2g20400 FvH4_2g20420 FvH4_2g20430 FvH4_4g01290 FvH4_4g01310 FvH4_5g09070
malus_domestica	MD06G1134100.v1.1 MD13G1200100.v1.1 MD13G1200300.v1.1 MD13G1200600.v1.1 MD14G1150400.v1.1 MD16G1200000.v1.1
prunus_persica	Prupe.1G021400_v2.0.a1 Prupe.1G021500_v2.0.a1 Prupe.1G021600_v2.0.a1 Prupe.1G021700_v2.0.a1 Prupe.1G021800_v2.0.a1
pyrus_communis	pycom13g17350 pycom13g17370 pycom13g17400 pycom13g17410 pycom16g16870
rosa_chinensis	RchiOBHm_Chr4g0387791 RchiOBHm_Chr4g0387801 RchiOBHm_Chr6g0286501 RchiOBHm_Chr6g0286511 RchiOBHm_Chr6g0286521 RchiOBHm_Chr6g0286531 RchiOBHm_Chr7g0189141
rosa_laevigata	RLG00000004629 RLG00000010094 RLG00000010095 RLG00000012561 RLG00000012563 RLG00000012564
rosa_multiflora	Rmu_co8365229.1_g000001 Rmu_sc0004628.1_g000001 Rmu_sc0004628.1_g000002 Rmu_sc0004816.1_g000003 Rmu_sc0004816.1_g000004 Rmu_sc0004816.1_g000005 Rmu_sc0004816.1_g000010 Rmu_sc0008916.1_g000002 Rmu_sc0013958.1_g000002
rosa_roxburghii	Rroxscaffold_3G00265750 Rroxscaffold_5G00334410 Rroxscaffold_5G00334420 Rroxscaffold_7G00182230 Rroxscaffold_7G00182240 Rroxscaffold_7G00182250 Rroxscaffold_7G00182270
rosa_rugosa	Rorug03G0313400 Rorug03G0313600 Rorug06G0180400 Rorug06G0180500 Rorug06G0180600 Rorug06G0496200
rosa_samantha	Rh4AG018400 Rh4AG018500 Rh4BG013400 Rh4BG013500 Rh4CG019600 Rh4CG019700 Rh4DG014200 Rh4DG014300 Rh6AG292700 Rh6AG292800 Rh6AG292900 Rh6AG293300 Rh6AG293400 Rh6AG293500 Rh6BG296200 Rh6BG296300 Rh6BG296500 Rh6BG296600 Rh6BG296700 Rh6BG296800 Rh6BG296900 Rh6CG296800 Rh6CG297000 Rh6CG297100 Rh6CG297200 Rh6DG288700 Rh6DG288800 Rh6DG289000 Rh6DG289100 Rh7AG101000 Rh7BG103600 Rh7CG105000 Rh7CG457500 Rh7DG102900
rosa_wichuraiana	Rw4G001210 Rw6G025230 Rw6G025240 Rw6G025250 Rw6G025260 Rw6G025270 Rw6G025540 Rw7G008720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	2 cut(s)	321, 642
AclWI	GGATC	3 cut(s)	175, 492, 505
AcuI	CTGAAG	2 cut(s)	35, 429
AcyI	GRCGYC	2 cut(s)	78, 164
AfaI	GTAC	2 cut(s)	35, 596
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	102
AjnI	CCWGG	2 cut(s)	286, 597
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	3 cut(s)	387, 581, 728
AluI	AGCT	3 cut(s)	387, 581, 728
Alw26I	GTCTC	2 cut(s)	200, 250
AlwI	GGATC	3 cut(s)	175, 492, 505
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	4 cut(s)	362, 581, 672, 687
AseI	ATTAAT	1 cut(s)	708
AspA2I	CCTAGG	1 cut(s)	697
AspLEI	GCGC	2 cut(s)	80, 552
AspS9I	GGNCC	4 cut(s)	15, 94, 395, 489
AsuHPI	GGTGA	4 cut(s)	37, 232, 307, 487
AvaII	GGWCC	3 cut(s)	15, 94, 395
AvrII	CCTAGG	1 cut(s)	697
BamHI	GGATCC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	158
BbvI	GCAGC	4 cut(s)	349, 568, 659, 674
BccI	CCATC	3 cut(s)	47, 74, 286
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	288, 599
BcoDI	GTCTC	2 cut(s)	200, 250
BfaI	CTAG	2 cut(s)	392, 698
BfmI	CTRYAG	2 cut(s)	582, 673
BfoI	RGCGCY	2 cut(s)	81, 553
BisI	GCNGC	5 cut(s)	363, 582, 643, 673, 688
BlnI	CCTAGG	1 cut(s)	697
BlsI	GCNGC	5 cut(s)	364, 583, 644, 674, 689
Bme1390I	CCNGG	2 cut(s)	288, 599
Bme18I	GGWCC	3 cut(s)	15, 94, 395
BmgT120I	GGNCC	4 cut(s)	15, 94, 395, 489
BmiI	GGNNCC	5 cut(s)	79, 96, 490, 499, 661
BmrFI	CCNGG	2 cut(s)	288, 599
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpuEI	CTTGAG	1 cut(s)	191
BsaHI	GRCGYC	2 cut(s)	78, 164
BsaJI	CCNNGG	5 cut(s)	81, 287, 471, 492, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	2 cut(s)	131, 211
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	288, 599
BseDI	CCNNGG	5 cut(s)	81, 287, 471, 492, 697
BseGI	GGATG	4 cut(s)	39, 153, 297, 603
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	349, 568, 659, 674
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	132, 212
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	200, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmI	GAATGC	2 cut(s)	254, 689
BsnI	GGCC	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	180, 497, 631
Bsp19I	CCATGG	2 cut(s)	81, 471
BspACI	CCGC	2 cut(s)	321, 642
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	5 cut(s)	79, 96, 490, 499, 661
BspMAI	CTGCAG	2 cut(s)	586, 677
BspPI	GGATC	3 cut(s)	175, 492, 505
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	2 cut(s)	131, 211
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	2 cut(s)	131, 211
BssECI	CCNNGG	5 cut(s)	81, 287, 471, 492, 697
BssMI	GATC	3 cut(s)	180, 497, 631
BssNI	GRCGYC	2 cut(s)	78, 164
BssSI	CACGAG	1 cut(s)	158
BssT1I	CCWWGG	4 cut(s)	81, 471, 492, 697
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	2 cut(s)	288, 599
Bst4CI	ACNGT	1 cut(s)	244
BstACI	GRCGYC	2 cut(s)	78, 164
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	197, 638
BstDSI	CCRYGG	2 cut(s)	81, 471
BstF5I	GGATG	4 cut(s)	39, 153, 297, 603
BstH2I	RGCGCY	2 cut(s)	81, 553
BstHHI	GCGC	2 cut(s)	80, 552
BstKTI	GATC	3 cut(s)	183, 500, 634
BstMAI	GTCTC	2 cut(s)	200, 250
BstMBI	GATC	3 cut(s)	180, 497, 631
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 547, 672, 693
BstNI	CCWGG	2 cut(s)	288, 599
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	2 cut(s)	286, 597
BstSFI	CTRYAG	2 cut(s)	582, 673
BstV1I	GCAGC	4 cut(s)	349, 568, 659, 674
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	491
BtgI	CCRYGG	2 cut(s)	81, 471
BtsCI	GGATG	4 cut(s)	39, 153, 297, 603
BtsI	GCAGTG	1 cut(s)	682
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	80, 552
Cfr10I	RCCGGY	2 cut(s)	131, 211
Cfr13I	GGNCC	4 cut(s)	15, 94, 395, 489
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	34, 595
CviAII	CATG	3 cut(s)	82, 472, 538
CviQI	GTAC	2 cut(s)	34, 595
DdeI	CTNAG	2 cut(s)	197, 638
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	3 cut(s)	182, 499, 633
DpnII	GATC	3 cut(s)	180, 497, 631
Eco130I	CCWWGG	4 cut(s)	81, 471, 492, 697
Eco47I	GGWCC	3 cut(s)	15, 94, 395
Eco57I	CTGAAG	2 cut(s)	35, 429
EcoO109I	RGGNCCY	2 cut(s)	395, 489
EcoRII	CCWGG	2 cut(s)	286, 597
EcoT14I	CCWWGG	4 cut(s)	81, 471, 492, 697
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	4 cut(s)	81, 471, 492, 697
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	3 cut(s)	85, 475, 541
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	3 cut(s)	81, 471, 537
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	5 cut(s)	363, 582, 643, 673, 688
FokI	GGATG	4 cut(s)	26, 140, 304, 590
Fsp4HI	GCNGC	5 cut(s)	363, 582, 643, 673, 688
FspBI	CTAG	2 cut(s)	392, 698
GlaI	GCGC	2 cut(s)	79, 551
GluI	GCNGC	5 cut(s)	363, 582, 643, 673, 688
HaeII	RGCGCY	2 cut(s)	81, 553
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	2 cut(s)	132, 212
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	80, 552
Hin1I	GRCGYC	2 cut(s)	78, 164
Hin1II	CATG	3 cut(s)	85, 475, 541
Hin6I	GCGC	2 cut(s)	78, 550
HinP1I	GCGC	2 cut(s)	78, 550
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	1 cut(s)	305
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	2 cut(s)	132, 212
HphI	GGTGA	4 cut(s)	37, 232, 307, 487
Hpy166II	GTNNAC	3 cut(s)	34, 145, 217
Hpy188I	TCNGA	5 cut(s)	89, 200, 266, 409, 447
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	3 cut(s)	34, 145, 217
HpyAV	CCTTC	3 cut(s)	28, 59, 108
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	233, 254, 584, 675
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 547, 672, 693
HpyF3I	CTNAG	2 cut(s)	197, 638
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	78, 164
Hsp92II	CATG	3 cut(s)	85, 475, 541
HspAI	GCGC	2 cut(s)	78, 550
KasI	GGCGCC	1 cut(s)	77
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	180, 497, 631
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	4 cut(s)	349, 568, 659, 674
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	392, 698
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	54, 160, 334
MalI	GATC	3 cut(s)	182, 499, 633
MboI	GATC	3 cut(s)	180, 497, 631
MboII	GAAGA	1 cut(s)	626
MflI	RGATCY	1 cut(s)	497
MluCI	AATT	3 cut(s)	102, 234, 267
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	6 cut(s)	53, 161, 167, 215, 365, 468
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	5 cut(s)	216, 317, 609, 708, 730
MslI	CAYNNNNRTG	3 cut(s)	158, 476, 536
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	132, 212
MspR9I	CCNGG	2 cut(s)	288, 599
Mva1269I	GAATGC	2 cut(s)	254, 689
MvaI	CCWGG	2 cut(s)	288, 599
MwoI	GCNNNNNNNGC	4 cut(s)	137, 547, 672, 693
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	78
NcoI	CCATGG	2 cut(s)	81, 471
NdeII	GATC	3 cut(s)	180, 497, 631
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	85, 475, 541
NlaIV	GGNNCC	5 cut(s)	79, 96, 490, 499, 661
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	541
PctI	GAATGC	2 cut(s)	254, 689
PdiI	GCCGGC	1 cut(s)	133
PkrI	GCNGC	5 cut(s)	364, 583, 644, 674, 689
PleI	GAGTC	1 cut(s)	313
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	286, 597
PspGI	CCWGG	2 cut(s)	286, 597
PspN4I	GGNNCC	5 cut(s)	79, 96, 490, 499, 661
PspPI	GGNCC	4 cut(s)	15, 94, 395, 489
PspPPI	RGGWCCY	1 cut(s)	395
PstI	CTGCAG	2 cut(s)	586, 677
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	2 cut(s)	35, 596
RsaNI	GTAC	2 cut(s)	34, 595
RseI	CAYNNNNRTG	3 cut(s)	158, 476, 536
SaqAI	TTAA	5 cut(s)	216, 317, 609, 708, 730
SatI	GCNGC	5 cut(s)	363, 582, 643, 673, 688
Sau3AI	GATC	3 cut(s)	180, 497, 631
Sau96I	GGNCC	4 cut(s)	15, 94, 395, 489
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	288, 599
SetI	ASST	8 cut(s)	150, 207, 389, 400, 536, 583, 600, 730
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	2 cut(s)	582, 673
SfoI	GGCGCC	1 cut(s)	79
SinI	GGWCC	3 cut(s)	15, 94, 395
SmiMI	CAYNNNNRTG	3 cut(s)	158, 476, 536
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	102, 234, 267
SsiI	CCGC	2 cut(s)	321, 642
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	392, 698
StyD4I	CCNGG	2 cut(s)	286, 597
StyI	CCWWGG	4 cut(s)	81, 471, 492, 697
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	150
TasI	AATT	3 cut(s)	102, 234, 267
TauI	GCSGC	1 cut(s)	645
Tru1I	TTAA	5 cut(s)	216, 317, 609, 708, 730
Tru9I	TTAA	5 cut(s)	216, 317, 609, 708, 730
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	362, 581, 672, 687
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	20, 430
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	3 cut(s)	15, 94, 395
VspI	ATTAAT	1 cut(s)	708
XceI	RCATGY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmaJI	CCTAGG	1 cut(s)	697
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	392, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.